KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:27:47 2014 Check: 00 .. Name: ENSBTAP00000056022/1-1176 Len: 1732 Check: 5675 Weight: 1.00 Name: ENSP00000262719/1-1717 Len: 1732 Check: 5728 Weight: 1.00 Name: bmy_09884T0/1-790 Len: 1732 Check: 1529 Weight: 1.00 Name: ENSTTRP00000014502/1-1192 Len: 1732 Check: 5755 Weight: 1.00 // 1 50 ENSBTAP00000056022/1-1176 ---------- ---------- ---------- ---------- ---------- ENSP00000262719/1-1717 MEPAAAATVQ RLPELGREDR ASAPAAAAAA AAAAAAAAAA LAAAAGGGRS bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000056022/1-1176 ---------- ---------- ---------- ---------- ---------- ENSP00000262719/1-1717 PEPALTPAAP SGGNGSGSGA REEAPGEAPP GPLPGRAGGA GRRRRRGAPQ bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000056022/1-1176 ---------- ---------- ---------- ---------- ---------- ENSP00000262719/1-1717 PIAGGAAPVP GAGGGANSLL LRRGRLKRNL SAAAAAASSS SSSSAAAASH bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000056022/1-1176 ---------- ---------- ---------- ---------- ---------- ENSP00000262719/1-1717 SPGAAGLPAS CSASASLCTR SLDRKTLLLK HRQTLQLQPS DRDWVRHQLQ bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000056022/1-1176 ---------- ---------- ---------- ---------- ---------- ENSP00000262719/1-1717 RGCVHVFDRH MASTYLRPVL CTLDTTAGEV AARLLQLGHK GGGVVKVLGQ bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000056022/1-1176 ---------- ---------- ---------- ---------- ---------- ENSP00000262719/1-1717 GPGAAAAREP AEPPPEAGPR LAPPEPRDSE VPPARSAPGA FGGPPRAPPA bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000056022/1-1176 ---------- ---------- ---------- ---------- ---------- ENSP00000262719/1-1717 DLPLPVGGPG GWSRRASPAP SDSSPGEPFV GGPVSSPRAP RPVVSDTESF bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000056022/1-1176 ---------- ---------- ---------- ---------- ---------- ENSP00000262719/1-1717 SLSPSAESVS DRLDPYSSGG GSSSSSEELE ADAASAPTGV PGQPRRPGHP bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000056022/1-1176 ---------- ---------- ---------- ---------- ---------- ENSP00000262719/1-1717 AQPLPLPQTA SSPQPQQKAP RAIDSPGGAV REGSCEEKAA AAVAPGGLQS bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000056022/1-1176 ---------- ---------- ---------- ---------- ---------- ENSP00000262719/1-1717 TPGRSGVTAE KAPPPPPPPT LYVQLHGETT RRLEAEEKPL QIQNDYLFQL bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000056022/1-1176 ---------- ------LSCL FVLVVGKPHS TGSSERIQLS GTYNVRKGKM ENSP00000262719/1-1717 GFGELWRVQE EGMDSEIGCL IRFYAGKPHS TGSSERIQLS GMYNVRKGKM bmy_09884T0/1-790 ---------- ---------- ------MPR- ---------- ---------- ENSTTRP00000014502/1-1192 ---------- ---------- ------KPHS TGSSERIQLS GMYNVRKGKM 551 600 ENSBTAP00000056022/1-1176 HLPVNRWTRR QVILCGTCLI VSSVKDSVAG KMHVLPLIGG KVEEVKKHQH ENSP00000262719/1-1717 QLPVNRWTRR QVILCGTCLI VSSVKDSLTG KMHVLPLIGG KVEEVKKHQH bmy_09884T0/1-790 --PIFKFM-- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 QLPVNRWTRR QVILCGTCLI VSSVKDSFTG KMHVLPLIGG KVEEVKKHQH 601 650 ENSBTAP00000056022/1-1176 CLAFSSSGPQ SQTYYICFDT FTEYLRWFDK SPRVASQRIS SVDLSCCSLE ENSP00000262719/1-1717 CLAFSSSGPQ SQTYYICFDT FTEYLRWLRQ VSKVASQRIS SVDLSCCSLE bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 CLAFSSSGPQ SQTYYICFDT FTEYLRWLRQ VSKVASQRIS SVDLSCCSLE 651 700 ENSBTAP00000056022/1-1176 HLPANLFYSQ DLTHLNLKQN FLRQNPSLPT ARGLSE-LQR FTKLKSLNLS ENSP00000262719/1-1717 HLPANLFYSQ DLTHLNLKQN FLRQNPSLPA ARGLNE-LQR FTKLKSLNLS bmy_09884T0/1-790 ---------- ---------- FLNPVSNMP- --GINQKTSR FVEDSGLDL- ENSTTRP00000014502/1-1192 HLPANLFYSQ DLTHLNLKQN FLRQSPSLPT ARGLNE-LQR FSKLKCLNLS 701 750 ENSBTAP00000056022/1-1176 NNHLGDFPLA VCNIPTLAEL NMSCNALRAV PAAVGAMHNL QTFLLDGNFL ENSP00000262719/1-1717 NNHLGDFPLA VCSIPTLAEL NVSCNALRSV PAAVGVMHNL QTFLLDGNFL bmy_09884T0/1-790 ---------- ---------- ---------- ---------- --WLISGILL ENSTTRP00000014502/1-1192 NNHLGDFPLA VCNIPTLAEL NVSCNALRAV PAAVGDMHNL QTFLLDGNFL 751 800 ENSBTAP00000056022/1-1176 QTLPAELENM HQLSYLGLSF NEFTDLPEVL QKLTAVEKLC MSGNCVGTLR ENSP00000262719/1-1717 QSLPAELENM KQLSYLGLSF NEFTDIPEVL EKLTAVDKLC MSGNCVETLR bmy_09884T0/1-790 H--------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 QTLPAELENM HQLSYLGLSF NEFTDIPEVL EKLTAVEKLC MSGNCMETLR 801 850 ENSBTAP00000056022/1-1176 LQALRKMPHI KHVDLRLNVI RNLIADGVDF LPHVTQLDLR DNKLEGLDAV ENSP00000262719/1-1717 LQALRKMPHI KHVDLRLNVI RKLIADEVDF LQHVTQLDLR DNKLGDLDAM bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 LQALRKMPHI KHVDLRLNLI RKLIADEVDF LPHVTQLDLR DNKLRDLDAM 851 900 ENSBTAP00000056022/1-1176 VFTNLEVLHC ERNQLVTLNA CGCFLKALYA SSNELVQLDV CPVPNYLSYM ENSP00000262719/1-1717 IFNNIEVLHC ERNQLVTLDI CGYFLKALYA SSNELVQLDV YPVPNYLSYM bmy_09884T0/1-790 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014502/1-1192 VFNNIEVLHC ERNQLVTLNI CGYFLKALYT SSNELVQLDV YPVPNYLSYM 901 950 ENSBTAP00000056022/1-1176 DVSRNCLENV PEWVCESRKL EVLDIGHNQI CELPARLFCN SSLRKLLAGH ENSP00000262719/1-1717 DVSRNRLENV PEWVCESRKL EVLDIGHNQI CELPARLFCN SSLRKLLAGH bmy_09884T0/1-790 ---------- ---------- ---------- -------FCH C--------- ENSTTRP00000014502/1-1192 DVSRNRLENV PEWVCESRKL EVLDIGHNQI CELPARLFCN SSLRKLLAGH 951 1000 ENSBTAP00000056022/1-1176 NRMARLPESL ERTSVEVLDV QHNQLLELPP SLLMKADSLR FLNASANKLE ENSP00000262719/1-1717 NQLARLPERL ERTSVEVLDV QHNQLLELPP NLLMKADSLR FLNASANKLE bmy_09884T0/1-790 ---------- ---------- ---------- -------SLR FLNASANKLE ENSTTRP00000014502/1-1192 NQLTRLPERL ERTSVEVLDV QHNQLLELPP NLLMKADSLR FLNASANQLV 1001 1050 ENSBTAP00000056022/1-1176 TLPPATLSEE TNSILQELYL TNNNLTDKCV SLLTGHPHLK VLHMAYNRLQ ENSP00000262719/1-1717 SLPPATLSEE TNSILQELYL TNNSLTDKCV PLLTGHPHLK ILHMAYNRLQ bmy_09884T0/1-790 TLPPATLSEE TNSVLQELYL TNNNLTDKCV PLLTGHPHLK ILHMAYNRLQ ENSTTRP00000014502/1-1192 NLPPATLSEE TNSVLQELYL TINNLTYKCV PLLTGHPHLK ILHIVYIRLL 1051 1100 ENSBTAP00000056022/1-1176 SFPASKMAKL EELEEIDLSG NKLKAVPTTI MNCRRMHTVT AHSNCIEVFP ENSP00000262719/1-1717 SFPASKMAKL EELEEIDLSG NKLKAIPTTI MNCRRMHTVI AHSNCIEVFP bmy_09884T0/1-790 SFPASKMAKL EELEEIDISG NKLKAVPTTI MNCRRMHTAI AHSNCIEVFP ENSTTRP00000014502/1-1192 SFPASKMAKL EELEEIDISG NKLKAVPTTI MNCRRMHTVI AHSNCIEVFP 1101 1150 ENSBTAP00000056022/1-1176 EVMQLPEIKC VDLSCNELSE VTLPENLPPK LQELDLTGNP RLALDHRTLE ENSP00000262719/1-1717 EVMQLPEIKC VDLSCNELSE VTLPENLPPK LQELDLTGNP RLVLDHKTLE bmy_09884T0/1-790 EVMQLPEIKC VDLSCNELSE VTLPENLPPK LQELDLTGNP RLALDHKTLE ENSTTRP00000014502/1-1192 EVMQLPEIKC VDLSCNELSE VTLPENLPPK LQELDLTGNP RLALDHKTLE 1151 1200 ENSBTAP00000056022/1-1176 LLNNIRCFKI DQPSAGDASG APAVWSHGYT EASGVKNKLC VAALSVNNFC ENSP00000262719/1-1717 LLNNIRCFKI DQPSTGDASG APAVWSHGYT EASGVKNKLC VAALSVNNFC bmy_09884T0/1-790 LLNNIRCFKI DQPSGGDASG APAVWSHGYT EASGVKNKLC VAALSVNNFR ENSTTRP00000014502/1-1192 LLNNIRCFKI DQPSGGDASG APAVWSHGYT EASGVKNKLC VAALSVNNFR 1201 1250 ENSBTAP00000056022/1-1176 DNQEALYGVF DGDRNVEVPY LLQCTMSDIL AEELQKTRDG EECMVNTFIV ENSP00000262719/1-1717 DNREALYGVF DGDRNVEVPY LLQCTMSDIL AEELQKTKNE EEYMVNTFIV bmy_09884T0/1-790 DNREALYGVF DGDRNVEVPY LLQCTMSDIL AEELQKTKNE EEYMVNTFIV ENSTTRP00000014502/1-1192 DNREALYGVF DGDRNVEVPY LLQCTMSDIL AEELQKTKNE EEYMVNTFIV 1251 1300 ENSBTAP00000056022/1-1176 MQRKLGTAGQ KLGGAAVLCH IRHDPVDPGG PFTLTSANVG KCQTVLCRNG ENSP00000262719/1-1717 MQRKLGTAGQ KLGGAAVLCH IKHDPVDPGG SFTLTSANVG KCQTVLCRNG bmy_09884T0/1-790 MQRKLGTAGQ KLGGAAVLCH IKHDPVDPGG PFTLTSANVG KCQTVLCRNG ENSTTRP00000014502/1-1192 MQRKLGTAGQ KLGGAAVLCH IKHDPVDPGG PFTLTSANVG KCQTVLCRNG 1301 1350 ENSBTAP00000056022/1-1176 KPLPLSRSYV MSCEEELRRI KRHKAIVTE- ---------- -DGKVNGVTE ENSP00000262719/1-1717 KPLPLSRSYI MSCEEELKRI KQHKAIITE- ---------- -DGKVNGVTE bmy_09884T0/1-790 KPLPLSRSYV MSCEEELKRI KQHKAIITEM VTSVWKPLFF QDGKVNGVTE ENSTTRP00000014502/1-1192 KPLPLSRSYV MSCEEELKRI KRHKAIITE- ---------- -DGKVNGVTE 1351 1400 ENSBTAP00000056022/1-1176 STRILGYTFL HPSVVPRPHV QSVALSPQDE FFILGSKGLW DSLSVEEAVD ENSP00000262719/1-1717 STRILGYTFL HPSVVPRPHV QSVLLTPQDE FFILGSKGLW DSLSVEEAVE bmy_09884T0/1-790 STRILGYTFL HPSVVPRPHV QSVALTPQDE FFILGSKGLW DSLSVEEAVG ENSTTRP00000014502/1-1192 STRILGYTFL HPSVVPRPHV QSVALTPQDE FFILGSKGLW DSLSVEEAVG 1401 1450 ENSBTAP00000056022/1-1176 AVRSVPDALA AAKKLCTLAQ SYGCRESVSA VVVQLSVPED SFCCCELAA- ENSP00000262719/1-1717 AVRNVPDALA AAKKLCTLAQ SYGCHDSISA VVVQLSVTED SFCCCELSAG bmy_09884T0/1-790 AVRNVPDALA AAKKLCTLAQ SYGCRDSVSA VVVQLSVPED SFCCCELGAG ENSTTRP00000014502/1-1192 AVRNVPDALA AAKKLCTLAQ SYGCRDSVSA VVVQLSVPED SFCCCELGAG 1451 1500 ENSBTAP00000056022/1-1176 --LPPPSPGV FAPAAGVAVR ERPADGLGAP SSSSGLASEM SSELSTSEMS ENSP00000262719/1-1717 GAVPPPSPGI FPPSVNMVIK DRPSDGLGVP SSSSGMASEI SSELSTSEMS bmy_09884T0/1-790 GPVPPPSPGT FPPSVSMVIK ERPADGLGVP SSSSGLASEM SSELSTSEMS ENSTTRP00000014502/1-1192 GPVPPPSPGT FPPSVSMVIK ERPADGLGVP SSSSGLASEM SSELSTSEMS 1501 1550 ENSBTAP00000056022/1-1176 SEVGSTASDE PPPPGPLGEG SPAGPGEPRC ALHPGGAPSA FQRQLSSATF ENSP00000262719/1-1717 SEVGSTASDE -PPPGALSEN SPAYPSEQRC MLHPICLSNS FQRQLSSATF bmy_09884T0/1-790 SEVGSTASDE -PPPGALSES SPACPSEPRC SLHPACPSSS FQRQLSSATF ENSTTRP00000014502/1-1192 SEVGSTASDE -PPPGALSES SPACPSEPRC SLHPACPSSS FQRQLSSATF 1551 1600 ENSBTAP00000056022/1-1176 SSAFSDNGLD SDDEEPIEGV FSNGSRVEVA ADIHCGRARD GERRR----- ENSP00000262719/1-1717 SSAFSDNGLD SDDEEPIEGV FTNGSRVEVE VDIHCSRAKE KEKQQHLLQV bmy_09884T0/1-790 SSAFSDNGLD SDDEEPIEGV FTNGSRVEVE VDIHCGRAKE KERQQPLLQL ENSTTRP00000014502/1-1192 SSAFSDNGLD SDDEEPIEGV FTNGSRVEVE VDIHCGRTKE KERQQPLLQL 1601 1650 ENSBTAP00000056022/1-1176 PPEAADEG-- VGAVEDEPGA SRRVD-GAAG TMGRRRGNGS VAPQERSHNV ENSP00000262719/1-1717 PAEASDEGIV ISANEDEPGL PRKADFSAVG TIGRRRANGS VAPQERSHNV bmy_09884T0/1-790 PAEASDEGIV ISANEDEPAL PRRADCAAVG TMGRRRANGS VAPQERSHNV ENSTTRP00000014502/1-1192 PAEASDEGIV ISANEDEPAL PRRADCAAVG TMGRRRANGS VAPQERSHNV 1651 1700 ENSBTAP00000056022/1-1176 IEVAADAPLR RPGGYFAAPA QPDPDDQLII PPELEEEVKE MMKQR---PP ENSP00000262719/1-1717 IEVATDAPLR KPGGYFAAPA QPDPDDQFII PPELEEEVKE IMKHHQEQQQ bmy_09884T0/1-790 IEVATDAPLR KPGGYFAAPA QPDPDDQFII PPELEEEVKE IMKHQQ--PP ENSTTRP00000014502/1-1192 IEVATDAPLR KPGGYFAAPA QPDPDDQFII PPELEEEVKE IMKHQQPPPP 1701 1750 ENSBTAP00000056022/1-1176 APPRPGPAE- -----PADCS -------CDT PL ENSP00000262719/1-1717 QQQPPPPPQL QPQ-LPRHYQ LDQLPDYYDT PL bmy_09884T0/1-790 PPPPPPPSQL HVQPPPRQWP ADQLPDSCDT PL ENSTTRP00000014502/1-1192 PPPPPPPSQL HVQPPPRQCP GDQLPDCCDT PL