KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:27:48 2014 Check: 00 .. Name: ENSBTAP00000056032/1-904 Len: 915 Check: 2434 Weight: 1.00 Name: ENSTTRP00000006051/1-716 Len: 915 Check: 6135 Weight: 1.00 Name: bmy_16804T0/1-798 Len: 915 Check: 3696 Weight: 1.00 Name: BACU009060/1-812 Len: 915 Check: 1136 Weight: 1.00 // 1 50 ENSBTAP00000056032/1-904 VWKDILWSGD DGGFHYNITQ RSPKLITYLN PQAPTQSTPL TMVLYGPAGV ENSTTRP00000006051/1-716 ---------- ---------- ---------- ---------- ---------- bmy_16804T0/1-798 ---------- ---------- ---------- -------MPL TVVLHGPAGV BACU009060/1-812 ---------- ---------- ---------- -------MPL TVVLHGPAGV 51 100 ENSBTAP00000056032/1-904 GKTTRAKELM LDWMQDDLAE TSNSAFYLSC KGLNHRRTCT FAELISANWP ENSTTRP00000006051/1-716 ---------- ---------- ---------- ---------- ---------- bmy_16804T0/1-798 GKTTVAKQLL LDWTQDDQAK TSSSAFYLSC KDLNHQGTCT FAELISANGP BACU009060/1-812 GKTTVAKQLL LEWTQDDQAK ASSSAFYLSC KDLNHKGTCT FAELVSANGP 101 150 ENSBTAP00000056032/1-904 HVQEDIPAIL AQAQKVLLIL DGFDELKVPS GALIHDICGD WKKQKPVPVL ENSTTRP00000006051/1-716 ---------- ---------- ---------- ---------- ---------- bmy_16804T0/1-798 DLQDAIPGIL TQARKILFIV DGFDELRVPS GALIHDICGD WRKQKPVPVL BACU009060/1-812 DLQDAIPGIL TQARKILFIV DGFDELRVPS GALIHDICGD WRKQRPVPVL 151 200 ENSBTAP00000056032/1-904 LGSLLKRKML PKATLLITTR PGALRELRLL TEQPLFIEME GFLEEDRKAY ENSTTRP00000006051/1-716 --------KM PRSTLVITR- -GVLRG-RLL VEQPL-IEIE RFLELDRKAY bmy_16804T0/1-798 LGSLLKRKML PKSTLVITTR PGALRELRLL VEQPLFIEIE GFLELDRKAY BACU009060/1-812 LGSLLKRKML PKSTLVITTR PGALRELRLL VEQPLFIEIE GFLELDRKAY 201 250 ENSBTAP00000056032/1-904 FLKHFEEESQ ALRAFDLMKN NAALFQLGSA PSVCWMVCTC LRQQMERGED ENSTTRP00000006051/1-716 F-KHFEEEMQ ALRAFELMKE NAALFHMGSA PAVCWIVCTC LKRQMERGED bmy_16804T0/1-798 FLKHFEEETQ ALRAFDLMKK NAALFRMGSA PAVCWLVCTC LKRQMERGED BACU009060/1-812 FLKHFEEETQ ALRAFDLMKK NAALFRMGSA PAVCWLVCTC LKRQMEKGED 251 300 ENSBTAP00000056032/1-904 PAATCRTTTA LFLRFLCGRF TPPHGGGPRR GLQAPLKPLC LLAAEGVWTQ ENSTTRP00000006051/1-716 PASTCRTTTS LFLRFLCSQF T--QLAQLRD CLQAPLKSVC LLAAEGIWTQ bmy_16804T0/1-798 PASTCHTTTS LFLRFLCSQF TAARSSCPRD CLQAPLKSVC LLAAEGIWTQ BACU009060/1-812 PASTCLTTTS LFLRFLCSQF TAARGSCPRD CLQAPLKSVC LLAAEGVWTQ 301 350 ENSBTAP00000056032/1-904 SSVFDGEDLR RLGVDPSALC PFLDGNILQK SEDGEACYSF IHLSVQQFLA ENSTTRP00000006051/1-716 TSVFDGEDLR RLGVQESALR PFLDKNILRK SKDCEACYSF IHLSVQQFLA bmy_16804T0/1-798 TSVFDGEDLR RLGVKESALC PFLDKNILQK SKDCEGCYSF IHLSVQQFLA BACU009060/1-812 TSVFDGEDLR RLGVKESALC PFLDKNILQK SKDCEGCYSF IHLSVQQFLA 351 400 ENSBTAP00000056032/1-904 AMFYVLEP-E EQEEEGLGGR RWHIGDVGKL LSKEERLKNP SLTHVGYFLF ENSTTRP00000006051/1-716 AMFYVLET-- --EKEDVGGH RCHIGDVQKL LSKEGRLKNP SLTQVGYFVF bmy_16804T0/1-798 AVFYVLET-- -EEEEDVGGH RCHIGNLQKL LSKEGRLKNP NLTQVGYFVF BACU009060/1-812 AVFYVLETEE EEEEEDVGGH RCHIGDLQKL LSKEGRLKNP SLTQVGYFVF 401 450 ENSBTAP00000056032/1-904 GLCNKRRAME LETTFGCLVS TEIKRELLKY TLMPHGKKSF SVTDTKEVLS ENSTTRP00000006051/1-716 GLSNKERATE LETTFGCLVS MEVKQQLLKC RSMPQGKKPF STMDAKEVLC bmy_16804T0/1-798 GLSNEERAME LEMTFGCPVS MEVKQQLLKC RSMPRGKKPF STMDTKEILH BACU009060/1-812 GLSNEERAME LETTFGCLVS MEIKQQLLKC TSTPRGKKPF STMDTKEILY 451 500 ENSBTAP00000056032/1-904 CLYESQEEQL VKDAMAHVKE MSIHLMNTSE MMQSSFCLKH CANLQKISLQ ENSTTRP00000006051/1-716 CLYESQEEEL VEEAVAAVTE ISIHLTSTLE MMQSSFCLKH CQNLQKISLQ bmy_16804T0/1-798 CLYESQEEEL VEDTMAPVTE ISIHLTNTFE MMQSSFCLKH CQNLQKISLQ BACU009060/1-812 CLYESQEEEL VEDTMAPVTE ISIHLTNTFE MMQSSFCLKH CQNLQKISLQ 501 550 ENSBTAP00000056032/1-904 VGKKIFLEND PALKSDPQNE TSQHDHHSLQ LWADLCSVFS SNENLNFLDV ENSTTRP00000006051/1-716 VGKRIFLEND TTLKSDAQE- ---------- ---------S SNKNLNFLDV bmy_16804T0/1-798 VGKRIFLEND TTWKSDAHVE R--------- ---------- ---------- BACU009060/1-812 VGKRIFLEND TTWKSDAQVE RSQHDHHSLH LWADLCSVFS STKNLNFLDV 551 600 ENSBTAP00000056032/1-904 KESFLSHSSV RILCEQITHV TCHLQKVVIK NVSPASAYRD FCLAFIGKKT ENSTTRP00000006051/1-716 RESFLSQSSV RILCEQITHA TCHLQKVVXX XXXXXXXXXX XXXXXXXXXX bmy_16804T0/1-798 ---------- ---------- --------IK NVSPADAYRD FCLAFIGKKT BACU009060/1-812 RESFLSHSSV RILCEQITHV TCHLQKVVIK NVSPADAYRD FCLAFIGKKT 601 650 ENSBTAP00000056032/1-904 LTHLVLEGSV RGDKILLLLL CEILKHPRCN LQYL------ ----RLGSCS ENSTTRP00000006051/1-716 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX------ ----XLGSCS bmy_16804T0/1-798 LTHLVLEGSV HSDEMLLLLL CEILKHPRCN LQYLRRMTFP HLSXRLGSCS BACU009060/1-812 LTHLVLEGSV HSDEMLLLLL CEILKHPRCN LQYL------ ----RLGSCS 651 700 ENSBTAP00000056032/1-904 DTTQQWADFS SALKVNQSLK CLDLTASEFL DEGVKLLCLT LRHPKCVLQK ENSTTRP00000006051/1-716 DTPQRWADFS SALKINQSLK CLDLTASEFP DEGVKLLCST LRHPMCFLQK bmy_16804T0/1-798 DTPQRWADFS SALKINQSLK CLDLTASEFP DEGVKLLCST LRHPMCFLQK BACU009060/1-812 DTPQRWADFS SALKINQSLK CLDLTASEFP DEGVKLLCST LRHPMCFLQK 701 750 ENSBTAP00000056032/1-904 LSLENCQLTQ ACCKELSSAL IVNQRLTHLC LAKNDLGDGG VKILCEGLRY ENSTTRP00000006051/1-716 LSLENCHLTE ACCEELSSAL IVNQRLTHLC LAKNNLGVGG VKILCEGLSY bmy_16804T0/1-798 LSLENCHLTE ACCKELSSAL IVNQRLTHLC LGKNNLGVGG VKILCEGLSY BACU009060/1-812 LSLENCHLTE ACCKELSSAL IVNQRLTHLC LGKNNLGIGG VKILCEGLSY 751 800 ENSBTAP00000056032/1-904 PECQLQTLVL RHCNINRHGC KYISKLLQGD SSLTSLDLGF NPIATGLCFL ENSTTRP00000006051/1-716 PECQLQTLVL CHCNINRHGC KYISKLLQGD SSLTDLDLGF NPIATGLCFL bmy_16804T0/1-798 PECQLQTLVL CHCNINRHGC KYISKLLQGD SSLTNLDLGF NPIATGLCFL BACU009060/1-812 PECQLQTLVL ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000056032/1-904 YEALKKPNCN LKCLGLWGCS ITPFSCQHLA SALVSSRSLE TLDLGQNAWG ENSTTRP00000006051/1-716 CEALKKPNCN LKCLGLWGCS ITPFSCQDLA SALISNQSLE TLDLGQNILG bmy_16804T0/1-798 SEALKKPNCN LKCLG----- ---------- -----NQSLE TLDLGQNILG BACU009060/1-812 ---------- ------WGCS ITPFGCQDLA SALISNQSLE TLDLGQNILG 851 900 ENSBTAP00000056032/1-904 QSGIVVLLKA LKQNHGSLKT LRLKMDKSTV EIQRLLKDVK ENNPRLTIEC ENSTTRP00000006051/1-716 QSGVMVLLEA LKQKNGPLRT LRLKIDKPTV EIQKLLKDVK ESSPQLTIEC bmy_16804T0/1-798 QSGIMVLLEA LKQKNGPLKT LRLKIDKSTM EIQKLLKDVK ESNPNLTIEC BACU009060/1-812 QSGIMVLLEA LKQKDGPLKT LRLKIDKSTM EIQKLLKDVK ESNPNLTIEC 901 950 ENSBTAP00000056032/1-904 NDARTTRSSC CDFFS ENSTTRP00000006051/1-716 NNARTARPLC CHFLS bmy_16804T0/1-798 NNXRTTRSSC CNFLS BACU009060/1-812 NNARTTRSSC CNFLS