KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:52 2014 Check: 00 .. Name: ENSP00000380779/1-592 Len: 621 Check: 1350 Weight: 1.00 Name: ENSBTAP00000056056/1-588 Len: 621 Check: 2189 Weight: 1.00 Name: ENSTTRP00000014314/1-593 Len: 621 Check: 6570 Weight: 1.00 Name: bmy_07014T0/1-310 Len: 621 Check: 7430 Weight: 1.00 Name: BACU013613/1-580 Len: 621 Check: 1194 Weight: 1.00 // 1 50 ENSP00000380779/1-592 ---------- ---------- ------MRPR GLPPLLVVLL GCWASVSAQT ENSBTAP00000056056/1-588 ---------- ---------- ------MGPR AVPRLLLVLL DCWASVSAQA ENSTTRP00000014314/1-593 ---------- ---------- ------MELR DLPPLLLLLV DCWASMSAQA bmy_07014T0/1-310 MPRTQPPRLP GSARSLAASR AGFRWVMGLR DLPPLLLVLL DFWASVSAQA BACU013613/1-580 MPRTQPPRLP GSARSLAASR ADFRWVMGLW DLQPLLLVLL DCWASVSAQA 51 100 ENSP00000380779/1-592 DATPAVTTEG LNSTEAALAT FGTFPSTRPP GTPRAPGPSS GPRPTPVTDV ENSBTAP00000056056/1-588 GTTPVVTTEG LNSTKPVPTT LRSVISSKPP EIPRASRPFS GPRPAPVTDV ENSTTRP00000014314/1-593 GDTPVVTTEA LSSTKPAPTT FRPAVSPRPH ETPRAPRPSS DPRPTPVTDV bmy_07014T0/1-310 GATPVVTTEG LYSMKPAPTT FRPAVSPRPH ETPRAPRPSS GPRPTPVTDV BACU013613/1-580 GATPVVTTEG LYSTKPAPTT FRPAVSPRPH ETPRAPRPSS GPRPTPVTDV 101 150 ENSP00000380779/1-592 AVLCVCDLSP AQCDINCCCD PDCSSVDFSV FSACSVPVVT GDSQFCSQKA ENSBTAP00000056056/1-588 AALCVCDLSP AQCDVNCCCD PDCSSVDFSV FSACSIPVVT GDSHFCSQKA ENSTTRP00000014314/1-593 AALCVCDLSP ALCDVNCCCD -DCSSVDFSV FS-CSIPVVM GDSQFCSQKA bmy_07014T0/1-310 AALCVCDLSP ALCDVNCCCD PDCSSVDFSV FSACSIPVVM GDSQFCSQKA BACU013613/1-580 AALCVCDLSP ALCDVNCCCD PDCSSVDFSV FSACSIPVVM GDSQFCSQKA 151 200 ENSP00000380779/1-592 VIYSLNFTAN PPQRVFELVD QINPSIFCIH ITNYKPALSF INPEVPDENN ENSBTAP00000056056/1-588 AVYSLNFTAD PPQRVFKLVD QINPSIFCVH ITNYKPALSF INPEVTDESS ENSTTRP00000014314/1-593 AIYSLNFTAD PPQRVFKLVN QINPSIFCIH ITNYKPALSF INPEVPDESN bmy_07014T0/1-310 ATYSLNFTAD PPQRVFKLVD QINPSIFCIH ITNYKPALSF INPEVPDESN BACU013613/1-580 AIYSLNFTAD PPQRVFKLVD QINPSIFCIH ITNYKPALSF INPEVPDESN 201 250 ENSP00000380779/1-592 FDTLMKTSDG FTLNAESYVS FTTKLDIPTA AKYEYGVPLQ TSDSFLRFPS ENSBTAP00000056056/1-588 FDKLMKAPDG FSLNAESDVS --TRLDAPQT AKYEYGVPLQ TSDSFLRFPS ENSTTRP00000014314/1-593 FDKLMKTSDG FSTNAESDVS LTTKPDAPNT AKYEYGVHLQ TSHSFLRFPS bmy_07014T0/1-310 FDKLMKTSDG FSSNAESDVS LTTKPDAPNT AKYEYGVHLQ TSHSFLRFPS BACU013613/1-580 FDKLMKTSDG FSSNAESDVS LTAKPDAPNT AKYEYGVHLQ TSHSFLRFPS 251 300 ENSP00000380779/1-592 SLTSSLCTDN NPAAFLVNQA VKCTRKINLE QCEEIEALSM AFYSSPEILR ENSBTAP00000056056/1-588 PLTSSLCTDN NPAAFLVNQA VKCTRRINLE HCEEMETLSM AYYSSPKILR ENSTTRP00000014314/1-593 PLTSSLCTDN NPAAFLVNQA VKCTRRINLE QCTEIETLSL AYYSSPKILR bmy_07014T0/1-310 PLTSSLCTDN NPAAFLVNQA VKCTRRINLE QCKEIETLSL AYYSSPKILR BACU013613/1-580 PLTSSLCTDN NPAAFLVNQA VKCTRRINLE QCKEIETLSL AYYSSPKILR 301 350 ENSP00000380779/1-592 VPDSRKKVPI TVQSIVIQSL NKTLTRREDT DVLQ---PTL VNAGHFSLCV ENSBTAP00000056056/1-588 VPGSGIEVPI MVQSIVIRSL NKTLTRLEDT EILRVSKQGV VEAGHIKICT ENSTTRP00000014314/1-593 VPGSGTKVPI TVQSIIIQSL NKTLTRLEDT DTDVLRPLVL VEAGHDKICT bmy_07014T0/1-310 VPGSGTK--- ---------- ---------- ---------- ---------- BACU013613/1-580 VPGSGTKVPI TVQSITIQSL NKTLTLQEDT DVLR--PLVL VEAGHDKICT 351 400 ENSP00000380779/1-592 NVVLEVKYSL TYTDAGEVTK ADLSFVLGTV SSVVVPLQQK FEIHFLQENT ENSBTAP00000056056/1-588 NVVLEVTYSL TYTDTGEVIK ADLFLLLGAV SSAMVPLQQK FEIYFIQQNA ENSTTRP00000014314/1-593 NIILEVKYSL TYTNAGEIIK ADVFVLLGAV SSAMVPFQQK FEIYFIQQNT bmy_07014T0/1-310 ---------- ---------- ---------- ---------- ---------- BACU013613/1-580 NVILEVKYSL MYTDAGEIVK ADVFVLLGAV SSAMVPFQQK FEIYF----- 401 450 ENSP00000380779/1-592 QPVPLSGNPG YVVGLPLAAG FQPHKGSGII QTTNRYGQLT ILHSTTEQDC ENSBTAP00000056056/1-588 KPVPLSGNPG YVVGLPLVAG FQPQKGSGII QTTNRYGQLT LLRSTTEQDC ENSTTRP00000014314/1-593 KPVPLSGNPG YVVGLPLAAG FQPQKGSGIM QTTNRYGQLT LLRSTAEQDC bmy_07014T0/1-310 ---------- ---------- ---------- ---------- ---------- BACU013613/1-580 ---------- ---------- ---------I QTTNRYGQLT LLRSTAEQDC 451 500 ENSP00000380779/1-592 LALEGVRTPV LFGYTMQSGC KLRLTGALPC QLVAQKVKSL LWGQGFPDYV ENSBTAP00000056056/1-588 LAAEGIRAPV LFGYNMQSGC KLRLTKALTC RLVAQKMKSL LKGQGFPDYV ENSTTRP00000014314/1-593 LAIAGIRTPV LFGYNMQSGC KLRLTKAIAC RLVAQKVESL LKGQGFPDYV bmy_07014T0/1-310 ---------- ---------- ---------- ---------- ----GIP--- BACU013613/1-580 LAIAGIRTPV LFGYNMQSGC KLRLTKAITC RLVAQKVESL LKGQGFPDYV 501 550 ENSP00000380779/1-592 APFGNSQAQD MLDWVPIHFI TQSFNRKHFV LQDSCQLPGA LVIEVKWTKY ENSBTAP00000056056/1-588 APFGNSQAQD VLDWVPVYFI TQTSHVK--- --DSCQLPVA LTVEVKWTKY ENSTTRP00000014314/1-593 APFGNSQAQD VLDWVPVHFI TQTSHMKHFV WQDSCQLPVA LAIEVKWTKY bmy_07014T0/1-310 ---------- ---------- ---------- ---------- ---------- BACU013613/1-580 APFGNSQAQD VLDWVPVHFI TQTSHMK--- --DSCQLPVA LAIEVKWTKY 551 600 ENSP00000380779/1-592 GSLLNPQAKI VNVTANLISS SFPEANSGNE RTILISTAVT FVDVSAPAEA ENSBTAP00000056056/1-588 GSLLNPQAKI VNVTARLISS SFPETNSGNE RTILISTAVT FVDVSAPAEA ENSTTRP00000014314/1-593 GSLLNPQAKI VNVTANLISS SFPETNSGNK RTILISTAVT FVDVSAPAEA bmy_07014T0/1-310 ---------- ---------- ---------- ---------- ---------- BACU013613/1-580 GSLLNPQAKI VNVTANLISS SFPETNSGNK RTILISTAVT FVDVSAPAEA 601 650 ENSP00000380779/1-592 GFRAPPAINA RLPFNFFFPF V ENSBTAP00000056056/1-588 GFRARPTINA RLPFNFFFPF V ENSTTRP00000014314/1-593 GFRARPTINA RLPFNFFFPF V bmy_07014T0/1-310 ---------- ---------- - BACU013613/1-580 GFRARPTINA RLPFNFFFPF V