KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:54 2014 Check: 00 .. Name: ENSBTAP00000056069/1-335 Len: 884 Check: 7239 Weight: 1.00 Name: ENSP00000358820/1-594 Len: 884 Check: 3702 Weight: 1.00 Name: BACU002734/1-708 Len: 884 Check: 8109 Weight: 1.00 Name: ENSTTRP00000009144/1-638 Len: 884 Check: 4730 Weight: 1.00 Name: bmy_11915T0/1-523 Len: 884 Check: 9930 Weight: 1.00 // 1 50 ENSBTAP00000056069/1-335 ---------- ---------- VSAGDGSRRN GGLSPRPRSG SHLSSIRMSR ENSP00000358820/1-594 ---------- ---------- ---------- ---------- -------MSR BACU002734/1-708 ---------- ---------- ---------- ---------- -------MSR ENSTTRP00000009144/1-638 QRALPVASSR EATAFPPPAS DQQLKQLRLG GTSHQATGTQ GVISSVNMSR bmy_11915T0/1-523 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000056069/1-335 PSSRAIYLHR KEYLQKIALE PTHLQHRVEH LMTCKLGTQR IQEPKDALQK ENSP00000358820/1-594 PSSRAIYLHR KEYSQNLTSE PTLLQHRVEH LMTCKQGSQR VQGPEDALQK BACU002734/1-708 PSSRAIYLHR KEYLQNLTSE PTHLQLRVEH LLTCKLGTQG VQEPKDALQK ENSTTRP00000009144/1-638 PSSRAIYLHR KEYLQNLTSE PTHLQFRVEH LLTCKLGTQR VQEPKDALQK bmy_11915T0/1-523 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000056069/1-335 LQEMDAQGRV WSQDLLLQVR DGWLQLLDIE TKEELESYRL DRIKVMDVAL ENSP00000358820/1-594 LFEMDAQGRV WSQDLILQVR DGWLQLLDIE TKEELDSYRL DSIQAMNVAL BACU002734/1-708 LQEMDAQGQV WSQDLLLQVR DGWLQLLDIE TKEELESYCL DSIKVMDVAL ENSTTRP00000009144/1-638 LQEMDAQGQV WSQDLLLQVR DGRLQLLDIE TKEELESYRL DGIKDMDVAL bmy_11915T0/1-523 ---MDAQGRV WSQDLLLQVR DGWLQLLDIE TKEELESYCL DSIKVMDVAL 151 200 ENSBTAP00000056069/1-335 NTGSYNSVLS ITVQDSDLRS TSTLLFQCQE VGAERLKTSL EKALEEEVEQ ENSP00000358820/1-594 NTCSYNSILS ITVQEPGLPG TSTLLFQCQE VGAERLKTSL QKALEEELEQ BACU002734/1-708 NICSYNSVLS ITVQDSGLRA TSTLLFQCQE VGAERLKTSL QKALEEELEQ ENSTTRP00000009144/1-638 NTCSYNSVLS ITVQDSGLPA TNTLLFQCQE VGAEQLKTSL QKALEEELEQ bmy_11915T0/1-523 NTCSYNSVLS ITVQDSGLRA TSILLFQCQE VGAERLKTSL QKALEEELEQ 201 250 ENSBTAP00000056069/1-335 -RPQLGALRP DQDRWRGSSL ERPLPKEQAR PLEWGPPPEQ HYLMSPEHSK ENSP00000358820/1-594 SRPRLGGLQP GQDRWRGPAM ERPLPMEQAR YLEPGIPPEQ PHQRTLEH-- BACU002734/1-708 -RPRFGALRP GQDRCRGPLL ERPIPKEQVP PLECGPLPEQ HHWTTPEH-- ENSTTRP00000009144/1-638 SRPQFGALLP GQDRCRGPLL ERPIPKEQVP PLECRPPPEQ HHWMTPEH-- bmy_11915T0/1-523 -RPRFGALRP GQDRYRGPLL ERPIPKEQVP PLECRPLPEQ HHWMTPEHSK 251 300 ENSBTAP00000056069/1-335 FGRGGQWEE- ---------- -------RFP SS------FC GLAKGKTPVV ENSP00000358820/1-594 ---------- ---------- -------SLP PSPRPLPRHT SAREPSAFTL BACU002734/1-708 ---------- ---------- -------NTP PTPRPLPHHS SIQQSSAFTL ENSTTRP00000009144/1-638 ---------- ---------- -------NTP RSPRPLPHHS IIQNSSAFTL bmy_11915T0/1-523 FGHGGQWEER IPIKDQRSSG PWSPSIADTP PTPRPLPHHS SIQKSSAFTL 301 350 ENSBTAP00000056069/1-335 SLASRSQAPG PPSQGLFGPQ EVLDHVLRDI ELFVGKLDEA QSKTSRKKKN ENSP00000358820/1-594 PPPRRSSSPE DPERD----E EVLNHVLRDI ELFMGKLEKA QAKTSRKKK- BACU002734/1-708 PPSRRSPSPG DPERD----K EVLNHILSDI ELFMGKLKEA QSNTRRKKKR ENSTTRP00000009144/1-638 PPSRRSPSPG DPGRD----Q EVLSHVLRDI ELFMEKLKED QSNTSHKKKR bmy_11915T0/1-523 PPSRRSPSPG DPEQD----K EVLNHILSDI ELFMAKLKEA QSNTSRKKKR 351 400 ENSBTAP00000056069/1-335 H----RKKKK KNK------- ---------- ---------- ---------- ENSP00000358820/1-594 -----FGKKN KDQGGLTQAQ YIDCFQKIKH SFNLLGRLAT WLKETSAPEL BACU002734/1-708 QGKKKMKKKI KNQGGITEAH YIDCFQKIKY SFNLLGKLAM MLQDTSGPVL ENSTTRP00000009144/1-638 Q----RKKQI KHQGGITEAH YIDCFQKIKY SFNLLGNLAT MLQDTGAPVF bmy_11915T0/1-523 QGKKKMKKKI KNQGGITEAH YIDCFQKIKY SFNLL----- ---------- 401 450 ENSBTAP00000056069/1-335 ---------- --PLSPKASV SA-------- ---------- --APELA--- ENSP00000358820/1-594 VHILFKSLNF ILARCPEAGL AAQVISPLLT PKAINLLQSC LSPPESNLWM BACU002734/1-708 VHLLFQTLNS ILEQCPEPGL AAQVISPLLT TKAIDLLQSC LSPPESNLWK ENSTTRP00000009144/1-638 IHLLFQTLNS ILEQCPEPGL AAQVISPLLT TKAVDLLQSC LSPPESNLWK bmy_11915T0/1-523 ---------- ILEQCPEPGL AAQVISPLLT TEAIDLLQSC LSPPESNLWK 451 500 ENSBTAP00000056069/1-335 ---------- ---------- ---------- ---------- ---------- ENSP00000358820/1-594 GLGPAWTTSR ADWTGDEPLP YQPTFSDDWQ LPEPSSQAPL GYQDPVSLRR BACU002734/1-708 GLGIAWTTSQ ANWTGSEPLP YQPTFYDGWQ IPEPSY---- ---------- ENSTTRP00000009144/1-638 GLGIAWTTSQ SKWTGSEPLP YQPTFYDGWQ LPELSYEEPS RYQDSXXXXG bmy_11915T0/1-523 GLGVAWTTSQ ANWTGGEPLP YQPTFYDGWQ IPEPSYEVPS RYQDSTSLRG 501 550 ENSBTAP00000056069/1-335 ---------- ---------- ---------- ---------- ---------- ENSP00000358820/1-594 GSHRLGSTSH FPQEKTHNHD PQPGDPNSRP SSPKPAQPAL KMQVLYEFEA BACU002734/1-708 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009144/1-638 ESPRLGSNSH LAQEETHNHG RHPG-----P SRPGPVKPAV KMQVLYEFEA bmy_11915T0/1-523 SGHCW----- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000056069/1-335 ---------- ---------- ---------- ---------- ---------G ENSP00000358820/1-594 RNPRELTVVQ GEKLEVLDHS KRWWLVKNEA GRSGYIPSNI LEPLQPGTPG BACU002734/1-708 ---------- ----QVLDQS KRWWLVKNEV GRSGYIPSNI LLPLQSGFLG ENSTTRP00000009144/1-638 RNPRELTVVQ GEVLEVLDQS KRWWLVKNEM GRSGYIPSNI LEPLQSGFPG bmy_11915T0/1-523 ---------- SDSWQVLDQS KRWWLVKNEV GRSGYIPSNI LAPLQSGFPG 601 650 ENSBTAP00000056069/1-335 GRTRT----- ---------- ---------- ---------- ---------- ENSP00000358820/1-594 TQGQSPSR-- ---------- ----VPMLRL SSRPEEVTDW LQAENFSTA- BACU002734/1-708 SQSESPLR-- ---------- ----APGLRL SSRPEEVTAW LRAENFCTVP ENSTTRP00000009144/1-638 SQSKSFPP-- ---------- ----APGLRL SSRPEEVTAW LQAENFSTV- bmy_11915T0/1-523 SQSESPPRVL PSLDYSEAIK PESEAPGLRL SSRPEEVTAW LRAENFSIV- 651 700 ENSBTAP00000056069/1-335 ---------- ---------- ---------- ---------- ---------- ENSP00000358820/1-594 ---------- --TVRTLG-- ---------- ---------- ---------- BACU002734/1-708 RRPACSIEMS SKSTMILGYW DIRGLAHAIR MLLEFTDTAY EEKRYTCGEA ENSTTRP00000009144/1-638 ---------- --TVKTLG-- ---------- ---------- ---------- bmy_11915T0/1-523 ---------- --TVKTLG-- ---------- ---------- ---------- 701 750 ENSBTAP00000056069/1-335 ---------- ---------- ---------- ---------- ---------- ENSP00000358820/1-594 ---------- ---------- ---------- ---------- ---------- BACU002734/1-708 PDYDKSQWLD MKFKLDLDFP NLPYLMDGKN KITQSNAILR YIARKHNMCG ENSTTRP00000009144/1-638 ---------- ---------- ---------- ---------- ---------- bmy_11915T0/1-523 ---------- ---------- ---------- ---------- ---------- 751 800 ENSBTAP00000056069/1-335 ---------- ---------- ---------- ---------- ---------- ENSP00000358820/1-594 ---------S LTGSQLLRIR ---------- ---------- ---PGELQML BACU002734/1-708 ETEEEKIRVD MMENQIMDFR MQLIQLCYNP DHEKLKPRYL EQLPGQLKQF ENSTTRP00000009144/1-638 ---------S MTGRQLLHMR ---------- ---------- ---PGELQML bmy_11915T0/1-523 ---------S MTGRQLLHMR ---------- ---------- ---PGELQML 801 850 ENSBTAP00000056069/1-335 ---------- ---------- ---------- ---------- ---------- ENSP00000358820/1-594 ---------- ---------- ---------- -----CPQEA PRI---LSRL BACU002734/1-708 SLFLGKYSWF AGEKLTFVDF LTYDVLDQNH IFEPKCLDEF PNLKAFMCRF ENSTTRP00000009144/1-638 ---------- ---------- ---------- -----CPQEA PKV---LARL bmy_11915T0/1-523 ---------- ---------- ---------- -----CPQEA PQV---LARL 851 900 ENSBTAP00000056069/1-335 ---------- ---------- ---------- ---- ENSP00000358820/1-594 EAVRRMLGI- -------SP- ---------- ---- BACU002734/1-708 EALEKIAAYM QSDRFLKMPI NNKMAQWGNK RIC- ENSTTRP00000009144/1-638 EAVRRMLGM- -------NP- ---------- ---- bmy_11915T0/1-523 EAVRRMLGV- -------RPP WDPDPRWKCG MIPE