KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:27:56 2014 Check: 00 .. Name: ENSBTAP00000056089/1-905 Len: 1562 Check: 2493 Weight: 1.00 Name: bmy_08518T0/1-859 Len: 1562 Check: 1221 Weight: 1.00 Name: ENSTTRP00000012579/1-625 Len: 1562 Check: 9302 Weight: 1.00 Name: BACU010207/1-1437 Len: 1562 Check: 6982 Weight: 1.00 // 1 50 ENSBTAP00000056089/1-905 MPRSMAPLKK PRNTSKLPLA LNPLKSKNVL AVLAERNQAI VPVGAWVEPA bmy_08518T0/1-859 MPGSMAPLKK PRNTTKLPLA LNPLKSKDVL AVLAERNQAI VPVGAWVEPA ENSTTRP00000012579/1-625 MPGSMAPIKK LRNTTKLPLA LNPLKSKDVL AVLAERNQAI VPVGAWVEPA BACU010207/1-1437 MPGSMAPLKK PRNTTELPLA LNPLKSKDVL AVLAERNQAI VPVGAWVEPA 51 100 ENSBTAP00000056089/1-905 PPDSSEVPAA TSAYIIEEEL KEQLRKKQEA LKHFQRQVKS RVNQQIRLRK bmy_08518T0/1-859 PPDSSAVPAS TSAYLIEEEL KEQLRKKQEA LKHFQRQVKR RVNQQVRLRK ENSTTRP00000012579/1-625 PPDSSAVPAS TSAYMIEKEL REQLRKKQEA LKHFQRQVKR RVNQQIRLRK BACU010207/1-1437 PPDSSAVPAS TSAYLIEEEL KEQLRKKQEA LKRFQRQVKR RVNQQIRLRK 101 150 ENSBTAP00000056089/1-905 KQQLQRSYEA AEKEGSIAMY SSDPAHLTPK RTSVFPSNLN AAIGRARLPP bmy_08518T0/1-859 KQQLQRSYEA AEKEGSIAMH SSDPAYLTLK RTSVFPNHLN AAIGSARLPP ENSTTRP00000012579/1-625 KQQLQRSYEA AEKEGSIAMH SSDPANLTLK RTSVFPNHLN AAIGSARLPP BACU010207/1-1437 KQQLQRSYEA AEKEGSIAMH SSDPAYLTLK RTSVFPNHLN AAIGSARLPP 151 200 ENSBTAP00000056089/1-905 PQMLEGGIED RENQSELFQQ QAQALSQSMK QARHRLASFK TVNQKDAPEF bmy_08518T0/1-859 SQKLEDGIED RENQNELFQQ QAQALSQTMK EARQRLASFK TVNKKYASVF ENSTTRP00000012579/1-625 SRKLEDGIED RENQNELFQQ QAQALSQTMK EARQRLASFK TVNKKNASVF BACU010207/1-1437 TQKLEDGIED RENQNELFQQ QAQALSQTMK EARQRLASFK TVNKKNASVF 201 250 ENSBTAP00000056089/1-905 PDDRKKSFPT QEKALCRKPS FTRINIGVRG DLPLEVHQGL LTPADYQKFM bmy_08518T0/1-859 PDDRKKNFPT QEKALCRKPS FTRINVGIRG EMPFEVHQGL LTLVDYQKFM ENSTTRP00000012579/1-625 PDDRKKNFPT QEKALCTKPS FTRINIGIXX XXXXKPHQGL LTLVDYQKFM BACU010207/1-1437 PDDRKKNFPT QEKALCRKPS FTRINVGIRG EMPFEVHQGL LTLVDYQKFM 251 300 ENSBTAP00000056089/1-905 DDQVGKYKEE PEESSSVMID KKGKKHLSWG DQEALFPEDK DIPFSRVQKV bmy_08518T0/1-859 EDQ----EPD TEESSSIMID KKGKKNLSWG DQQDLLFEDK DIPFSTVQKV ENSTTRP00000012579/1-625 EDQ----EPD TEESSSIMID KKGKKNLSWG DQQDLLFEGK DIPFSTVQKV BACU010207/1-1437 EDQ----EPD TEQSSSIMID KKGKKNLSWG DQQDLLFEDK DIPFSTVQKV 301 350 ENSBTAP00000056089/1-905 QFKTPLFDVI EEEEVKQLHQ DVLPEAQDYL PEA------- QGDLTSVLDV bmy_08518T0/1-859 QFKNPLFAVM EEEEVKQLHQ DVLPEXQDYL PEAQGDLLQT QGDLTGVCSV ENSTTRP00000012579/1-625 QFKNPLFAVM EEEEVRQLHQ DVLPEAQDYL PEAPGDLLQT QGDLTGVCSV BACU010207/1-1437 QFKNPLFAVM EEEEVKQLHQ DVLPEAQDYL PEAQGDLLQT QGDLTGVCSV 351 400 ENSBTAP00000056089/1-905 EWEAQRCEPR LSTQHIDLEG HTV------- ---------- ---------- bmy_08518T0/1-859 ELEAQSVELR LSTQDIELEG QAV------- ---------- ---------- ENSTTRP00000012579/1-625 ELEAQSVELR LGTQDIKLEG QAV------- ---------- ---------- BACU010207/1-1437 ELEAQSVELR LSAEDIELEG QAVEPKAQAV KTKTQSVMLK DQSVELEDGN 401 450 ENSBTAP00000056089/1-905 --------EP KAQAIKTKTK SCILKDQTVG LEDGDIALEV QDFPLQNQTF bmy_08518T0/1-859 --------EP KAQAVKTKTQ SVMLKDQNVE LEDGNIVLEV QDFLLQNQAF ENSTTRP00000012579/1-625 --------EP KAQAVKTKTQ SVMLKDQSVE LEDGNIVLEV QDFLLQNQAF BACU010207/1-1437 IVLEGQAFEP KAQAVKTKTQ SVMLKDQSVE LEDGNIVLEV QDFLLQNQAF 451 500 ENSBTAP00000056089/1-905 LPTDQHILPK DQNIQPECQD QDFLPSDQQH ITPVWTIYFL KKLSLLDEVF bmy_08518T0/1-859 LPTDQHILRK DQNVLPKCQD QDFLPTD-QH VLP------- KDQNVQPK-- ENSTTRP00000012579/1-625 LPTDQHILPK DQNVLPKCQD QDFLPTD-QH VLL------- KDQNVQPK-- BACU010207/1-1437 LPTDQHILPK DQNVLPKCQD QDFLPTD-QH VLP------- KDQNVQPK-- 501 550 ENSBTAP00000056089/1-905 LAAFVCFESL FLTQVPRPAL QQRLIRLRGK ERDQQEVNYL GLWLGLCGIE bmy_08518T0/1-859 -----CQDQD FLPRDQKANL KPP------- ---------- ---------- ENSTTRP00000012579/1-625 -----CQDQD FLPKDQ---- ---------- ---------- ---------- BACU010207/1-1437 -----CQDQD FLPRDQKANL KPP------- ---------- ---------- 551 600 ENSBTAP00000056089/1-905 YSVLTYSLKM MASGRSQGEV FPLDICQDLL HRREDEAFIS GKAEQKKDCS bmy_08518T0/1-859 --------AS ILIGRSGGEV FPLDVHQDLL HRHQDQAFIN GK-------- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 --------AS ILIGRSGGEV FPLDVHQDLL HRHQDQAFIN SK-------- 601 650 ENSBTAP00000056089/1-905 QRDFRKCGLC FIPYCFTSSG VEKITKVCFK ETYCDM-NEK GRKDFSLASY bmy_08518T0/1-859 ---------- ---------- -----KVRFK ESYCDMTNEK GREDFSLAGY ENSTTRP00000012579/1-625 ---------- ---------- -----KVRFK ESYCDMTNEK GREDFSLAGY BACU010207/1-1437 ---------- ---------- -----KVRFK ESYCDMTNEK GREDFPLAGY 651 700 ENSBTAP00000056089/1-905 QYLPPKLQYQ ASIRDQQLSS LMRE------ ---------- ---------- bmy_08518T0/1-859 QYLPPKLQDQ AFIRDQQLSS FMREERVRDE LTLGCHQYVK PKMQDQAFPR ENSTTRP00000012579/1-625 QYLPPKLQDQ AFIRDQQLSS FMRE------ ---------- ---------- BACU010207/1-1437 QYLPPKLQDQ AFIRDQ---- ---------- ---------- ---------- 701 750 ENSBTAP00000056089/1-905 --QPCVG--- ---------- ---------- --------TA ERWQEDLLLD bmy_08518T0/1-859 EQNKCIKQPS SFEKWEIERG VASGVPSHRN YGQASHNMTD ERWRKELFLE ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- EREREELTLG BACU010207/1-1437 --NKCIKQPS SFEKWEIERG VASGVPSHRN YGQASHNMTD ERWRMELFLE 751 800 ENSBTAP00000056089/1-905 GHHHLAPKQQ REASSRKQ-- ---------- ---------- ---------- bmy_08518T0/1-859 HHEYVLHEIQ DPGSTREQ-- ---------- ---------- ---------- ENSTTRP00000012579/1-625 CHQNVKPKMQ DQASPIEQ-- ---------- ---------- ---------- BACU010207/1-1437 HHEYVLHEIQ DPGSTREQSL RSIQQPSVGI AERQRAGLLP AGHQHLPPKH 801 850 ENSBTAP00000056089/1-905 ------HHHF YIRSNFEQYE ILSSRLQGKE L--VGDEYQS RLNTEFQTPL bmy_08518T0/1-859 ---------- ---------- ---------- ---VGGEYQS GLNAEFQTPL ENSTTRP00000012579/1-625 ------NKCI KQLSSFEKWE -VERRVA-SE VPSVGGEYQS GLNTEFQTPL BACU010207/1-1437 QREASSSRQV KQTVEYEPWS -LDRVMGPTE LGAVGGEYQS GLNTEFQTPL 851 900 ENSBTAP00000056089/1-905 ALQSGVSQEE DKKERQKQYL RYRRLFMDIE REQVKEQQRQ KEHKKKIEKI bmy_08518T0/1-859 ALQSGVNQEE DKKERQKQYL RYRRLFMDIE REQVKEQQRQ KEQRKKIEKM ENSTTRP00000012579/1-625 ALQSGVSQEE DKKERQKQYL RYRRLFMDIE REQVKEQQRQ KEQR------ BACU010207/1-1437 ALQSGVSQEE DKKERQKQYL RYRRLFMDIE REQVKEQQRQ KEQRKKIEKI 901 950 ENSBTAP00000056089/1-905 KKKKEQQRYA EEQRILRMKS HEEPCSGEKM SEILAQLQLE EIKGAREKQQ bmy_08518T0/1-859 KKKKEQQRYA EEQRILRMNF REEPYSGEKM SETLAQLQLE EVKGAREK-Q ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 KKKKEQQRYA EEQRILRMNF CEEPYSGEKM SEILAQLQLE EVKGAREK-Q 951 1000 ENSBTAP00000056089/1-905 QKEKEYQRYV EALRAQIQEK MQLYNITLPP LCCCGPDFWD AHPDTCANNC bmy_08518T0/1-859 QKEKEYQRYV EALRAQIQEK MQLYNITLPP LCCCGPDFWD AHPDTCANNC ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 QKVKEYQRYV EALKAQIQEK MQLYNITLPP LCCCGPDFWD AHPDTCANNC 1001 1050 ENSBTAP00000056089/1-905 IFYKNHK--- ---------- ---------- ---------- ---------- bmy_08518T0/1-859 IFYKNHK--- ---------- ---------- ---------- ---------- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 IFYKNHKVPS WVQVRYRGFI LLITFLIYTC YHMSRKPISV VKSRLHRNCS 1051 1100 ENSBTAP00000056089/1-905 ---------- ---------- ---------- ---------- ---------- bmy_08518T0/1-859 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 GMIQPINDTH SLNDTTWCNW APFDQSNYKE LLGAVDNAFL VAYAVGMFIS 1101 1150 ENSBTAP00000056089/1-905 ---------- ---------- ---------A YTRALHS--- --VVNSCD-- bmy_08518T0/1-859 ---------- ---------- ---------A YTXALHS--- --VINSCD-- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 GIFGERLPLR YYLTAGMLLS GLFTSLLGLG YFWNIHALWY FVLIQICNGL 1151 1200 ENSBTAP00000056089/1-905 ---------- ------IPEG NSDLRVAIHN FASAHRRTLK NL-------- bmy_08518T0/1-859 ---------- ------IPEG NSTLRVAIHN FASAHRRTLK NL-------- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 VQTTGWPSVV TCVGNWFGKG KRGLIMGIWN SHTSVGNILG SLIAGIWVDE 1201 1250 ENSBTAP00000056089/1-905 ---------- ---------- ---------- ---------- ---------- bmy_08518T0/1-859 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 QWGLSFVVPG VITAIMGLIT FFFFIEYPED VGCSPPQHHG GLEENVDDAE 1251 1300 ENSBTAP00000056089/1-905 ---------- ---------- ---------- ---------- ---------- bmy_08518T0/1-859 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 DPGSGPHSNR ENGLESAVTS SKEPSAQPTA ISFFGALWIP GVVEFSLCLL 1301 1350 ENSBTAP00000056089/1-905 ---------- ---------- ---------- ---------- ---------- bmy_08518T0/1-859 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 FAKLVSYTFL YWLPLYIFNV VHFSAKESGD LSTLFDVGGI VGGILAGLIS 1351 1400 ENSBTAP00000056089/1-905 ---------- ---------- ---------- ---------- ---------- bmy_08518T0/1-859 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 DYTNGRATTC CVMLILAAPM MFLYNYVGQS GISISIVMLL ICGALVNGPY 1401 1450 ENSBTAP00000056089/1-905 ---------- ---------- ---------- ---------- ---------- bmy_08518T0/1-859 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 ALITTAVSAD LGTHKSLKGN AKALSTVTAI IDGTGSIGAA LGPLLAGLIS 1451 1500 ENSBTAP00000056089/1-905 ---------- ---------- ---------- ---------- ---------- bmy_08518T0/1-859 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 PTGWNNVFYM LITADILACL LLCRLVYKEI LAWKASLSRD RGKLLLMRSC 1501 1550 ENSBTAP00000056089/1-905 ---------- ---------- ---------- ---------- ---------- bmy_08518T0/1-859 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012579/1-625 ---------- ---------- ---------- ---------- ---------- BACU010207/1-1437 RSDGPGLDGK CEEEPTGVMV TSTVSGGELP FEDGVVRVQG EQDAGQEALA 1551 1600 ENSBTAP00000056089/1-905 ---------- -- bmy_08518T0/1-859 ---------- -- ENSTTRP00000012579/1-625 ---------- -- BACU010207/1-1437 ESVPCPALEG ER