KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:56 2014 Check: 00 .. Name: ENSP00000331087/1-329 Len: 334 Check: 5101 Weight: 1.00 Name: ENSBTAP00000056093/1-325 Len: 334 Check: 8105 Weight: 1.00 Name: bmy_05030T0/1-244 Len: 334 Check: 1963 Weight: 1.00 Name: BACU003592/1-328 Len: 334 Check: 5919 Weight: 1.00 Name: ENSTTRP00000012527/1-325 Len: 334 Check: 5448 Weight: 1.00 // 1 50 ENSP00000331087/1-329 MAEAGTGEPS PSVEGEHGTE YDTLPSDTVS LSDSDSDLSL PGGAEVEALS ENSBTAP00000056093/1-325 MAEAGHSQHF ------LDPE VDALPPDTVS LSDSDSDLSL PDGVGVDALS bmy_05030T0/1-244 ---------- ---------- --MMLRWKLC LQ-------- ---------- BACU003592/1-328 MAEAGDGQHF ------LGSG GDALPPDPVC LSDSDSDLSL PGDAEVEALS ENSTTRP00000012527/1-325 MAEAGDGQHS ------VGSG GAALSPDPVC LSDSDSDLSL LDDAEVEALS 51 100 ENSP00000331087/1-329 PMGLPGEE-- DSGPDEPPS- --PPSGLLPA TVQPFHLRGM SSTFSQRSRD ENSBTAP00000056093/1-325 PGGLPGEASG DSGPDEPPS- --PPRGLPTE AVQPFHLRGT SSTFSQRSHS bmy_05030T0/1-244 -GRCPGRPWG IRAPMSPPR- --PPRXXXXX XXXXXXXX-- ---------- BACU003592/1-328 PGALPGEALG DSGPDEPPSP PLPPRRFPTA AVQPFHLRGT SPTFSQRSHD ENSTTRP00000012527/1-325 PGGLPGEAPG DSGPDEPPS- --PPRSFATA AVQPFHLRGT SPTFSQRSHD 101 150 ENSP00000331087/1-329 IFDCLEGAAR RAPSSVAHTS MSDNGGFKRP LAPSGRSPVE GLGRAHRSPA ENSBTAP00000056093/1-325 IFDGLEGAAR RAVPAVTPAS PGDGGGFQQL LTPSSQPAAG VPGRAAGSPA bmy_05030T0/1-244 ---------- ---------- ---------- ----XXXXXG GPSRATRNPA BACU003592/1-328 IFDGLERAAR RAPPSAAPAG PGDSGGFRQP PTLSSQPPAG GLSRATRNPT ENSTTRP00000012527/1-325 IFGGLERAAR RAPPSAAPAG PGDSGGFRQP LTLSSRPPAG GLSRATQNPA 151 200 ENSP00000331087/1-329 SPRVPPVPDY VAHPERWTKY SLEDVTEVSE QSNQATALAF LGSQSLAAPT ENSBTAP00000056093/1-325 AQRAPPVPDY VTHPERWTRY SLDDVAEASE QSNRAAALAF LGPQNLAAPG bmy_05030T0/1-244 PLRVPPVPDY VAHPERWTKY SLEDVAEASK QSNRAAALAF LGPQNLAAPS BACU003592/1-328 PLRVPPVPDY VAHPERWTKY SLEDVAEVSN QSNRAAALAF LGPQSLAAPS ENSTTRP00000012527/1-325 PLRVPPVPDY VAHPERWTKY SLEGVAEASK QSNRAAALAF LGPQSLAAPS 201 250 ENSP00000331087/1-329 DCVSSFNQDP SSCGEGRVIF TKPVRGVEAR HERKRVLGKV GEPGRGGLGN ENSBTAP00000056093/1-325 NYMPSFNQDP SSCGEGRLVF TKPTRASEAR PDRKRVSRKV GEPGRGDPGV bmy_05030T0/1-244 DYVPSFNQDP SSCGEGRLIF TKPVRTGEAR LEKRRVPRKA GEPGGGTRGI BACU003592/1-328 DYVPSFNQDP SSCGEGRLIF TKPVRTGEAR LEKRRVPRKA GEPGGGTRGI ENSTTRP00000012527/1-325 GYVPSFNQDP SSCGEGRLIF SKPVRTGEAR LEKRRVPRKA GEPGGSPHGI 251 300 ENSP00000331087/1-329 PATDRGEGPV ELAHLAGPGS PEAEEWGSHH GGLQEVEALS GSVHSGSVPG ENSBTAP00000056093/1-325 PGAAGGEGPV ELAHLARPGS PEAEEWSGPR GGLQEVGASA GVAHARPGSS bmy_05030T0/1-244 PGAAGGEGPV ELAHLARPGS PEAEEWSRPR GGLQEVGAPE GEAHAGSGAS BACU003592/1-328 PGAAGGEGPV ELAHLARPGS PEAEEWSRPR GGLQEVGAPE GEAHAGSGAS ENSTTRP00000012527/1-325 PGAAGGEGPV ELAHLARPGS PEAEEWSRPR GRLQEVGAPE GEALAGSGAS 301 350 ENSP00000331087/1-329 LPPVETVGFH GSRKRSRDHF RNKSSSPEDP GAEV ENSBTAP00000056093/1-325 PPLVETVGFH GSKKRSRDHF RSRGGSPEAP GAEL bmy_05030T0/1-244 ALPVETVGFH SSKKRSRGHF RSKGSSPEAP GAEV BACU003592/1-328 ALPVETVGFH SSKKRSRGQF RSKGSSPEAP GAEV ENSTTRP00000012527/1-325 ALPGEAVGFH SSRKRSRDHF RSKDSSPEAP GADV