KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 18:28:01 2014  Check: 00 ..

 Name: bmy_05015T0/1-224         Len:    235  Check:  4750  Weight:  1.00
 Name: BACU003605/1-231          Len:    235  Check:  4127  Weight:  1.00
 Name: ENSP00000344430/1-228     Len:    235  Check:  2606  Weight:  1.00
 Name: ENSBTAP00000056116/1-202  Len:    235  Check:  4217  Weight:  1.00

//


                          1                                                   50
bmy_05015T0/1-224         MRARSEPQRP PCSSSGACVG AC-------- ---VAAQGPS QCPAPLGAPA 
BACU003605/1-231          ----MLAERC CCVSVGDCVQ MAKWRRAPDV PAKAAAQGPS QCPAPLGAPA 
ENSP00000344430/1-228     -MREGKRGPP CILSFRGTLE RV------EA QWELEAQGPG QCPAPLGDPA 
ENSBTAP00000056116/1-202  ---------- ---------- ---------- ---LQAQGPA QCPALLGAPA 


                          51                                                 100
bmy_05015T0/1-224         STTDGTQEAR VPLDGAFWIP RPPAASPKGC FACVSKPPAL QAPVAAGPEP 
BACU003605/1-231          STTDGTQEAR VPLDGAFWIP RPPAASPKGC FACVSKPPAL QAPVAPGPEP 
ENSP00000344430/1-228     STTDGAQEAR VPLDGAFWIP RPPAGSPKGC FACVSKPPAL QAPAAPAPEP 
ENSBTAP00000056116/1-202  STTDGTQEAR VPLDGAFWIP RPPAGSPKGC FACVSKPPAL QAPAAPAPEP 


                          101                                                150
bmy_05015T0/1-224         SASPPMAPTL FPMESKSSKT DSVRATSAPQ ACKHLAEKKT MTNPTTVIEV 
BACU003605/1-231          SASPPMAPTL FPMESKSSKT DSVRATSAPQ ACKHLAEKKT MTNPTTVIEV 
ENSP00000344430/1-228     SASPPMAPTL FPMESKSSKT DSVRAAGAPP ACKHLAEKKT MTNPTTVIEV 
ENSBTAP00000056116/1-202  SASPPMAPTL FPMESKSSKT DSVRAAGAPP ACKHLAEKKT MTNPTTVIEV 


                          151                                                200
bmy_05015T0/1-224         YPDTTEVNDY YLWSIFNFVY LNFCCLGFIA LAYSLKVRDK KLLNDLNGAV 
BACU003605/1-231          YPDTTEVNDY YLWSIFNFVY LNFCCLGFIA LAYSLKVRDK KLLNDLNGAV 
ENSP00000344430/1-228     YPDTTEVNDY YLWSIFNFVY LNFCCLGFIA LAYSLKVRDK KLLNDLNGAV 
ENSBTAP00000056116/1-202  YPDTTEVNDY YLWSIFNFVY LNFCCLGFIA LAYSLKVRDK KLLNDLNGAV 


                          201                                                250
bmy_05015T0/1-224         EDAKTARLFN ITSSALAASC IILIFIFLRY PLTDY 
BACU003605/1-231          EDAKTARLFN ITSSALAASC IILVFIFLRY PLTDY 
ENSP00000344430/1-228     EDAKTARLFN ITSSALAASC IILVFIFLRY PLTDY 
ENSBTAP00000056116/1-202  EDAKTARLFN ITSSALAASC IILVFIFLRY PLTDY