KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:02 2014 Check: 00 .. Name: ENSBTAP00000056128/1-726 Len: 730 Check: 5259 Weight: 1.00 Name: ENSTTRP00000011705/1-491 Len: 730 Check: 7040 Weight: 1.00 Name: bmy_02614T0/1-432 Len: 730 Check: 3587 Weight: 1.00 Name: BACU016670/1-705 Len: 730 Check: 8101 Weight: 1.00 // 1 50 ENSBTAP00000056128/1-726 MGQWGFRLVA LLLLLRHRQG AEACSTVGCC FQNPPYPDAD SGSASGPRAP ENSTTRP00000011705/1-491 ---------- ---------- ---------- ---------- ---------- bmy_02614T0/1-432 ---------- ---------- ---------- ---------- ---------- BACU016670/1-705 MGQRVTRLVL LLLLLLPRQG ---------- ---------- -GLASGPRDL 51 100 ENSBTAP00000056128/1-726 SCYRVFSSAG YECSWEYEGP AAGVSHFLRC CLQSGRCCYF ATGSATKLQF ENSTTRP00000011705/1-491 ---------- ---------- ---------- ---------- ---------- bmy_02614T0/1-432 ---------- ---------- ---------- ---------- ---------- BACU016670/1-705 NCYRILSNAG YECSWEYEGP AAGVSHFLRC CLKPGRCCYF AAGSATKLQF 101 150 ENSBTAP00000056128/1-726 SDQDGISVLH NVTLWVESRA ANRTEKSPNV TLNLYSSVKY DPPPENIKVS ENSTTRP00000011705/1-491 ---------- ---------- ---------- ---------- ---------- bmy_02614T0/1-432 ---------- ---------- ---------- ---------- ---------- BACU016670/1-705 SDQDGIPVLH AVTLWVESRA ANWTEKSPNI TLNLYSSVKY DPPPGNIKVS 151 200 ENSBTAP00000056128/1-726 KSAGKLRMEW ETPARQDGAQ VQFRHRTPGS PWKLGDCGHQ DDAGFESCLC ENSTTRP00000011705/1-491 ---------- ---------- ---------- ----GDCGHQ DDAGFESCLC bmy_02614T0/1-432 ---------- ---------- ---------- ---------- ---------- BACU016670/1-705 RSAGQLLMKW ETPAHQDGAE VQFRHRTPGS PWKLGDCGRQ DDADFESCLC 201 250 ENSBTAP00000056128/1-726 PLEMDMAQEF QLRRRLGPGV PRGPWSSWSS PVCIPPETPP QAEVRFSVEQ ENSTTRP00000011705/1-491 PLEMDTAQEF QLRRRLRPGV SGGPWSSWSS PVCIPPENPP QAKVRFSVEQ bmy_02614T0/1-432 ---------- ---------- ---------- ------MSTP GDDVHVQVPT BACU016670/1-705 PLETDTAQEF QLRRRLRPGV PGGPWSSWSS PVCIPPEPPP QAKVRFSVEQ 251 300 ENSBTAP00000056128/1-726 LRPDGRRQVT LHEQLPQLEL PEGCLGPDSG MEVTYHIHLH MLSCPCKTRA ENSTTRP00000011705/1-491 LRPNGRRKVT FHEQLPQLEL PE-CLGPDSG MEVXXXXXXX XXXXXXXXXX bmy_02614T0/1-432 ------NHLS HSQQLPQLEL PEGCRGPDSG MEVTYYVRLH MLSCPCKAKA BACU016670/1-705 LRPDGRRQVT LHEQLPQLEL PEGCLRPDSG MEVTYHVHLH MLSCPCKAKA 301 350 ENSBTAP00000056128/1-726 KRTLRLKKKL VLSSAAYDLA VVSRNRFGLG PNQTWHIPAC IHSEPGLLNI ENSTTRP00000011705/1-491 XXXXXXXXXX XXXSAAYDLV VFSRNRFGLG PNQTWHIPAY THSEPGVLNI bmy_02614T0/1-432 MRTLRLRKKL ILSGAAYDLV VVSRNRFGLG PNQIWHIPAY THSEPGVLNI BACU016670/1-705 TRTLRLQKKL ILSGAAYDLT VVSRNRFGPG PNQTWHIPAY THSEPGALNI 351 400 ENSBTAP00000056128/1-726 SAGANGTTIR WPARAQGMRY CIEWQLQGQE ENLAACIVTA PQDPDAAGTA ENSTTRP00000011705/1-491 STRANRTTMH WPAQAQGMTY CIEWQPQGQD ESLATCTLTA PQDRDPDRMA bmy_02614T0/1-432 STGANRTTMH WPARAQGMTY CIEWQPQGQD ESLATCTLTA PQDRDPAGMA BACU016670/1-705 STGANRTTMH WPARAQGMTY CIEWQPQGQD ESLATCILTA PQDRDPAGMA 401 450 ENSBTAP00000056128/1-726 THSWSQESGA LEQKACYRIT IFASAHPEKP TSWSTVLSTY HFGGNASEAG ENSTTRP00000011705/1-491 MHSLSQASGA MRQKECYRVT IFASAHPEKP TSWSTVLSTF HFGGNASEAG bmy_02614T0/1-432 THSLSQGSGA MWQKECYRIT IFASAHPEKP TSWSTVLSTY HFGGN----- BACU016670/1-705 THSLSQGSGA MWQKECYRIT IFASAHPEKP TSWSTVLSTY HFGGNASEAG 451 500 ENSBTAP00000056128/1-726 SPQHVSVRKL SQDSVSVDWT PSLLSTCPGV LKEYVVCCQE EDSNQFTELH ENSTTRP00000011705/1-491 SPQHVSVKKL SQDSVSVDWT PSLLSTCPGV LKEYVVRCQD EASNQVSELS bmy_02614T0/1-432 ---------- ---------- ---------- ---------- -------ELS BACU016670/1-705 SPQHVSVKKL SQDSVSVDWT PSLLSTCPGV LKEYVVRCQD EASNQVSELS 501 550 ENSBTAP00000056128/1-726 VKPTETQVTL QGLRAGTPYK VQVRADTAKR RGAWSQPLRF TIEVQVSELS ENSTTRP00000011705/1-491 VNATETQITL QGLRAATAYK VQVRADTAKW RGAWSQALRF TVEVQVSELS bmy_02614T0/1-432 VKATETQMTL QGLRAATAYK VQVRADTAKW RGAWSHPLRF TVEVQVSELS BACU016670/1-705 VKATETQITL QGLRAATAYK VQVRADTAKW RGAWSQPLRF TVEVQVSELS 551 600 ENSBTAP00000056128/1-726 DLSIFLASLG SFVSILLLGI FGYLGLNRAV RHLCPPLPTP GASTAIKFSG ENSTTRP00000011705/1-491 DLSIFLASFG SFVSILLLGI FGYLGLNRAV RHLCPPLPTP CASTAVEFSG bmy_02614T0/1-432 NLSIFLTSLG SFVSILLLGI FGYLGLNRAV RHLCPPLPTP CASTAVEFSG BACU016670/1-705 NLSIFLTSLG SFVSILLLGI FGYLGLNRAV RHLCPPLPTP CASTAVEFSG 601 650 ENSBTAP00000056128/1-726 SQGKQVWQWT SPADFPEEVS PQEALMVNIS WEKGEGADMG TLGTLKEKTE ENSTTRP00000011705/1-491 SQGKQVWQWN SPADFPEEVS QQGALVVNIS WDKGERTDVD TAGLLKEKME bmy_02614T0/1-432 SQGKEVWQWT SPADFPEEVS QQEALVVNIS WDKGERADMD TAGLLKEXME BACU016670/1-705 SQGKQVWQWT SPADFPEEVS QQEALVVNIS WDKGERADMD TAGLLKEKME 651 700 ENSBTAP00000056128/1-726 LPLHAPKPAL D----LKDRK QMQGCPEAGA PGPGWQDGLV EDSLAQAARS ENSTTRP00000011705/1-491 LPLGAPEPAL DTELPLKDGN ---GC-KAGT ---------- ---------- bmy_02614T0/1-432 LPLGAPEPAL DTELPLKDRK WVKGCPEAGT LGPGRQDSL- EDSPAQAAGL BACU016670/1-705 LPLGAPEPAL DTELPLKDRK WVQGCPEAGT LGPGWQDSL- EDSPAQAAGL 701 750 ENSBTAP00000056128/1-726 PLLILGGLGW TPRFGSQGET GASASSYREA ENSTTRP00000011705/1-491 ---------- ---------- ---------- bmy_02614T0/1-432 PLL-LGDLRQ TPKFCSQGET ETSTSSYR-- BACU016670/1-705 PLL-LGDLRQ SPKFCSQGET ETSASSYR--