KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:04 2014 Check: 00 .. Name: ENSBTAP00000056142/1-406 Len: 415 Check: 6433 Weight: 1.00 Name: ENSTTRP00000014732/1-304 Len: 415 Check: 9141 Weight: 1.00 Name: bmy_09205T0/1-333 Len: 415 Check: 6603 Weight: 1.00 Name: BACU015255/1-182 Len: 415 Check: 4326 Weight: 1.00 // 1 50 ENSBTAP00000056142/1-406 -------VRG PGQRRPDDAK RGDPRAAMAS LLGTYPWPEG LECPALEAEL ENSTTRP00000014732/1-304 ---------- ---------- ---------- ---------- ---------- bmy_09205T0/1-333 MRGVRCVLCG GGTARWETGD RGGRR----- ---------- ---------- BACU015255/1-182 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000056142/1-406 SDGLSPPAAP RPPGDKGSES RIRRPMNAFM VWAKDERKRL AVQPDLHNAE ENSTTRP00000014732/1-304 ---------- ---------- ---------- ---------- ---------- bmy_09205T0/1-333 ---------- ---------- ---------- ---------- ---------- BACU015255/1-182 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000056142/1-406 LSRCWGKSWK ALTLSQKRPY VDEAERLRLQ HMQDYPNYKY RPRRKKQAKR ENSTTRP00000014732/1-304 ------KSWK ALTLSQKRPY VDEAERLRLQ HMQDYPNYKY RPRMKKQAKR bmy_09205T0/1-333 ------KSWK ALTLSQKRPY VDEAERLRLQ HMQDYPNYKY RPRRKKQAKR BACU015255/1-182 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000056142/1-406 LCKRVDPGFL LSSLSRDQNS LPEKRGGGRG APGEKEDRGE YSPRSALPGL ENSTTRP00000014732/1-304 LCKR-DPGFL LSSLSRDQNA LLEN-GGGRG APGGXXXXXX XXXXXXXXXX bmy_09205T0/1-333 LCKRVDPGFL LSSLSRDQNA LPEKRGGGRG APGEKEDRGE YSPGSALPGL BACU015255/1-182 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000056142/1-406 RGCFHDGPAG GSGGGGTPGS VDAYPYGLPT PPEMSPLDVL EPEQTFFSSP ENSTTRP00000014732/1-304 XXXXXXXXXX X-XXXXXXXX XXXXXXXXXX XXXXXXXDVL EPEQS--SSP bmy_09205T0/1-333 RGCFHEGPAG G-GGGGTPGS VDAYPYGLPT PPEMSPLDVL EPEQSFFSSP BACU015255/1-182 ---------- ---------- ---------- ---MSPLDVL EPEQSFFSSP 251 300 ENSBTAP00000056142/1-406 CQEDHAHSRR IAHLPGPPYS PEYAPNPLHC GHPLGSLALS QSSGVSMMST ENSTTRP00000014732/1-304 CQEEHAHSRR IPHLPGPPYS PEYAPSPLHC GHPLGSLALG QSSGVSMMST bmy_09205T0/1-333 CQEEHAHSRR IPHLPGPPYS PEYAPSPLHC GHPLGSLALG QSSGVSMMPT BACU015255/1-182 CQEEHAHSGR IPHLPGPPYS PEYAPSPLHC GHPLGSLALG QSSGVSMMPT 301 350 ENSBTAP00000056142/1-406 VPGCPPSPAY YSQAAYPPLH SNLHAHLGQL SPPPEHPGFE ALDQLSQVEL ENSTTRP00000014732/1-304 VPGCPPSPAY YSPAAYPPLH SNLHAHLGQL SPPPEHPGFD ALDQLSQVEL bmy_09205T0/1-333 VPGCPPSPAY YSPAAYPPLH SNLHAHLGQL SPPPEHPGFD ALDQLSQVEL BACU015255/1-182 VPGCPPSPAY YSPAAYPPLH SNLHAHLGQL SPPPEHPGFD ALDQLSQVEL 351 400 ENSBTAP00000056142/1-406 LGDMDRNEFD QYLNTPGHPD SA--AGALSA QGAVSQVTPT GPTETSLISV ENSTTRP00000014732/1-304 LGDMDRNEFD QYLNTPGHPD SAAGAGALSG QGPVSQVTPT GPTETSLISV bmy_09205T0/1-333 LGDMDRNEFD QYLNTPGHPD SAAGAGALSG QGPVSQVTPT GPTETSLISV BACU015255/1-182 LGDMDRNEFD QYLNTPGHPD SAAGAGALSG QGPVSQVTPT GPTETSLISV 401 450 ENSBTAP00000056142/1-406 LADATATYYN SYSVS ENSTTRP00000014732/1-304 LADATATYYN SYSVS bmy_09205T0/1-333 LADATATYYN SYSVS BACU015255/1-182 LADATATYYN SYSVS