KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:07 2014 Check: 00 .. Name: BACU011423/1-704 Len: 705 Check: 7130 Weight: 1.00 Name: ENSP00000395535/1-498 Len: 705 Check: 1455 Weight: 1.00 Name: ENSBTAP00000056184/1-489 Len: 705 Check: 4485 Weight: 1.00 Name: ENSTTRP00000004362/1-498 Len: 705 Check: 8926 Weight: 1.00 Name: bmy_18745T0/1-393 Len: 705 Check: 3969 Weight: 1.00 // 1 50 BACU011423/1-704 MTFCPHCERV SFASTRKKLK VIVKSLKIAL TEETVHGIAE CGSKGEKLSL ENSP00000395535/1-498 ---------- ---------- ---------M AAAAAAAPSG GGGGGEEERL ENSBTAP00000056184/1-489 ---------- ---------- ---------- -----QSPAL SGESALR--- ENSTTRP00000004362/1-498 ---------- ---------- ---------M AAAAAAAPSG GGGGGEEERL bmy_18745T0/1-393 ---------- ---------- ---------- ---------- ---------- 51 100 BACU011423/1-704 EYTSVAVASI VLSWALSNWS FADTDDDLYV LKSGGHLSLL VFPSLSASVT ENSP00000395535/1-498 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056184/1-489 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004362/1-498 ---------- ---------- ---------- ---------- ---------- bmy_18745T0/1-393 ---------- ---------- ---------- ---------- ---------- 101 150 BACU011423/1-704 PVSTEEKAEE QDLQGLKDKP LKFKKVKKDK KEDKEGKHEP LQPAAHHSAE ENSP00000395535/1-498 ----EEKSED QDLQGLKDKP LKFKKVKKDK KEEKEGKHEP VQPSAHHSAE ENSBTAP00000056184/1-489 ----EEKSEE QDLQGLKDKP LKFKKVKKDK KEDKEGKHEP LQPAAHHSAE ENSTTRP00000004362/1-498 ----EEKSEE QDLQGLKDKP LKFKKVKKDK KEDKEGKHEP LQPAAHRSAE bmy_18745T0/1-393 ---------- ---------- ---------- ---------- ---------- 151 200 BACU011423/1-704 PAEAGKAETS EGSGSAPAVP EASASPKQRR SIIRDRGPMY DDPTLPEGWT ENSP00000395535/1-498 PAEAGKAETS EGSGSAPAVP EASASPKQRR SIIRDRGPMY DDPTLPEGWT ENSBTAP00000056184/1-489 PAEAGKAETS EGSGSAPAVP EASASPKQRR SIIRDRGPMY DDPTLPEGWT ENSTTRP00000004362/1-498 PAEAGKAETS EGSGSAPAVP EASASPKQRR SIIRDRGPMY DDPTLPEGWT bmy_18745T0/1-393 ---------- ---------- ---------- --------MY DDPTLPEGWT 201 250 BACU011423/1-704 RKLKQRKSGR SAGKYDVYLI NPQGKAFRSK VELIAYFEKV GDTSLDPNDF ENSP00000395535/1-498 RKLKQRKSGR SAGKYDVYLI NPQGKAFRSK VELIAYFEKV GDTSLDPNDF ENSBTAP00000056184/1-489 RKLKQRKSGR SAGKYDVYLI NPQGKAFRSK VELIAYFEKV GDTSLDPNDF ENSTTRP00000004362/1-498 RKLKQRKSGR SAGKYDVYLI NPQGKAFRSK VELIAYFEKV GDTSLDPNDF bmy_18745T0/1-393 RKLKQRKSGR SAGKYDVYLI NPQGKAFRSK VELIAYFEKV GDTSLDPNDF 251 300 BACU011423/1-704 DFTVTGRGSP SRREQKPPKK PKSPKAPGTG RGRGRPKGSG TTRPKAATSE ENSP00000395535/1-498 DFTVTGRGSP SRREQKPPKK PKSPKAPGTG RGRGRPKGSG TTRPKAATSE ENSBTAP00000056184/1-489 DFTVTGRGSP SRREQKPPKK PKSPKAPGTG RGRGRPKGSG TTRPKAAASE ENSTTRP00000004362/1-498 DFTVTGRGSP SRREQKPPKK PKSPKAPGTG RGRGRPKGSG TTRPKAAASE bmy_18745T0/1-393 DFTVTGRGSP SRREQKPPKK PKSPKAPGTG RGRGRPKGSG TTRPKAATSE 301 350 BACU011423/1-704 GVQVKRVLEK SPGKLLVKMP FQASPGSKAE GGGATTSAQV MVIKRPGRKR ENSP00000395535/1-498 GVQVKRVLEK SPGKLLVKMP FQTSPGGKAE GGGATTSTQV MVIKRPGRKR ENSBTAP00000056184/1-489 GVQVKRVLEK SPGKLLVKMP FQAAPGSKAE GGGATTSAQV MVIKRPGRKR ENSTTRP00000004362/1-498 GVQVKRVLEK SPGKLLVKMP FQASPGSKAE GGGATTSAQV MVIKRPGRKR bmy_18745T0/1-393 GVQVKRVLEK SPGKLLVKMP FQASPGSKAE GGGATTSAQV MVIKRPGRKR 351 400 BACU011423/1-704 KAEADPQAIP KKRGRKPGSV VAAAAAEAKK KAVKESSIRS VQETVLPIKK ENSP00000395535/1-498 KAEADPQAIP KKRGRKPGSV VAAAAAEAKK KAVKESSIRS VQETVLPIKK ENSBTAP00000056184/1-489 KAEADPQAIP KKRGRKPGSV VAAATAEAKK KAVKESSIRS VQETVLPIKK ENSTTRP00000004362/1-498 KAEADPQAIP KKRGRKPGSV VAAAAAEAKK KAVKESSIRS VQETVLPIKK bmy_18745T0/1-393 KAEADPQAIP KKRGRKPGSV VAAAAAEAKK KAVKESSIRS VQETVLPIKK 401 450 BACU011423/1-704 RKTRETVSIE RSPESPVSLL QGAHSSSFCW PLHEICQGTH DFSEELKIGE ENSP00000395535/1-498 RKTRETVSIE -VKEVVKPLL VSTLGEKSGK GLKT-CKSPG RKSKE-SSPK ENSBTAP00000056184/1-489 RKTRETVSIE -VKEVVKPLL VSTLGEKSGK GLKT-CKSPG RKSKE-SSPK ENSTTRP00000004362/1-498 RKTRETVSIE -VKEVVKPLL VSTLGEKSGK GLKT-CKSPG RKSKE-SSPK bmy_18745T0/1-393 RKTRETVSIE -VKEVVKPLL VSTLGEKSGK GLKT-CKSPG RKSKE-SSPK 451 500 BACU011423/1-704 GGFGCVYRAV MRNTVYAVKR LKEPSDF-PV QGPRPLLVLG PKQEADLEWT ENSP00000395535/1-498 GRSSSASSPP KKEHHHHHHH SESPKAPVPL LPPLPPPPPE PESSEDPTSP ENSBTAP00000056184/1-489 GRSGSASSPP KKEHHHHHHH VEPPKAPAPL LLPPPPPPPE PQSSEDPASP ENSTTRP00000004362/1-498 GRSGSASSPP KKEHHHHHHH VEPPKAPAPL LPPPPPPPPE PQSSEAPASP bmy_18745T0/1-393 GRSGSASSPP KKEHHHHHHH AEPPKAPAPL LPPPPPPPPE PQSSEDPASP 501 550 BACU011423/1-704 TVKQSFRTEV EQLSRFRHPN IVDFAGYCAQ SGFYCLVYGF LPNGSLEDRL ENSP00000395535/1-498 PEPQDLSSSV CKEEKMPRGG SLESDG-CPK E--------- ---------- ENSBTAP00000056184/1-489 PEPQDLSSSV CKEEKMPRAG SLESDG-CPK E--------- ---------- ENSTTRP00000004362/1-498 PEPQDLSSSV CKEEKMPRAG SLESDG-CPK E--------- ---------- bmy_18745T0/1-393 PEPQDLSSSV CKEEKMPRAG SLESDG-CPK E--------- ---------- 551 600 BACU011423/1-704 HVQTQAWSPL SWPQRLDILL GTARAIQFLH QDSPSLIHGD VKRSAALASG ENSP00000395535/1-498 ---------- --PAKTQPAV ATA------- ---------- -------ATA ENSBTAP00000056184/1-489 ---------- --PAKTQPAL ATA------- ---------- -------APA ENSTTRP00000004362/1-498 ---------- --PAKTQPAL TTA------- ---------- -------AAA bmy_18745T0/1-393 ---------- --PAKTQPAL TTA------- ---------- -------ATA 601 650 BACU011423/1-704 REKQPFVGEQ TRMEPASFSL YPNAGDAVSL VSSFLGYPAD RVCSPAFTPP ENSP00000395535/1-498 AEKYKHRGEG ERKDIVSSSM ---------- ---------- ---------- ENSBTAP00000056184/1-489 TEKYKHRGEG ERKDIVSSSM ---------- ---------- ---------- ENSTTRP00000004362/1-498 TEKYKHRGEG ERKDIVSSSM ---------- ---------- ---------- bmy_18745T0/1-393 TEKYKHRGEG ERKDIVSSSM ---------- ---------- ---------- 651 700 BACU011423/1-704 PCPGAAVFTL AWFDFCCVYL IESPSNALHA FPQLWSSTLD PSFPPLLSFS ENSP00000395535/1-498 PRPNR----- ---------- -EEP------ --------VD SRTP-----V ENSBTAP00000056184/1-489 PRPNR----- ---------- -EEP------ --------VD SRTP-----V ENSTTRP00000004362/1-498 PRPNR----- ---------- -EEP------ --------VD SRTP-----V bmy_18745T0/1-393 PRPNR----- ---------- -EEP------ --------VD SRTP-----V 701 750 BACU011423/1-704 DDFIS ENSP00000395535/1-498 TERVS ENSBTAP00000056184/1-489 TERVS ENSTTRP00000004362/1-498 TERVS bmy_18745T0/1-393 TERVS