KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:08 2014 Check: 00 .. Name: ENSBTAP00000056186/1-1051 Len: 1140 Check: 8873 Weight: 1.00 Name: ENSP00000263468/1-1117 Len: 1140 Check: 2917 Weight: 1.00 Name: ENSTTRP00000010459/1-1085 Len: 1140 Check: 7706 Weight: 1.00 Name: bmy_07916T0/1-1028 Len: 1140 Check: 4403 Weight: 1.00 Name: BACU014492/1-862 Len: 1140 Check: 8948 Weight: 1.00 // 1 50 ENSBTAP00000056186/1-1051 ---------- ---------- ---------- ---------- ---------- ENSP00000263468/1-1117 MLAGRPGTRS AVGELGTESS DNLDRAPLGP RESGGHHRPG SYLDMKIHLE ENSTTRP00000010459/1-1085 MMTGRPGARS AVSRQGTESS DTRVRAPLSP RLSDGRHRPG AYLDMKIHFE bmy_07916T0/1-1028 ---------- ---------- ---------- MDSGG----- ---------- BACU014492/1-862 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000056186/1-1051 ---------- ---------- ---------- --RAFEEKRK EQEEREHQIR ENSP00000263468/1-1117 KNLEEERQIL LQQQKICRNR ARKYFVESNR RKKAFEEKRK EQEEKEHQIR ENSTTRP00000010459/1-1085 KNLEEERQIL LQQQKICRNQ ARKYFVESNR RKKAFEEKRK QQEEREHQIR bmy_07916T0/1-1028 ---------- ---------- ----ILEGDC FEKAFEEKRK QQEEREHQIR BACU014492/1-862 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000056186/1-1051 EQILQQRKQK VEEVTEKFQR AHIPFSQRRR TVLQRPVLPL EDALKQIQES ENSP00000263468/1-1117 EQILQQRKQK FEEVTEKFQR AHVPLSQRRK AVSRKPVPPL EEALKQIQES ENSTTRP00000010459/1-1085 EQILQQRKKK FEEVTEKFQR AHIPLSQRKR TVFQKPVPPL EEALKQIQES bmy_07916T0/1-1028 EQILQQRKQK FEEVTEKFQR AHIPLSQRKR TVFQKPVPPI EEALKQIQES BACU014492/1-862 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000056186/1-1051 NLKSEVNLPS SHRPIINWSS CRHATPPSLS QNKLKNKNNV MEQIVCEKEQ ENSP00000263468/1-1117 NLKSEVNLPF SRRPTINWRA IDSALPSALS KNDHKHQKQL LSKINCEKEM ENSTTRP00000010459/1-1085 NLKSEVNLPS SHRPIIGWRV IDNSLPSSLS KNDHKHQKH- LSKINSDKEM bmy_07916T0/1-1028 NLKSEVNLPS SHRPIIDWRV IDNSLPSSLS KNDHKQQKHL LSKINCDKEM BACU014492/1-862 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000056186/1-1051 RYKRTCCIKM RKNIVRLKVE KSDKMIKDQI SISNIHVFV- -VRRLILNHR ENSP00000263468/1-1117 NENMRATLAT SKNVFQLKLE ETQKLLEDQ- HLSNLQKFGD EVNQITNSET ENSTTRP00000010459/1-1085 KENSKANLTT NKDAFQLKLE ETQKLLEDQ- HLSSLQKFCD EVNHITNSET bmy_07916T0/1-1028 KENSKANLTT NKDAFQLKLE ETRKLLEDQ- HLSSLQKFCD EVNRITNSET BACU014492/1-862 ---------- ---------- --------M- FFFFFQKFCD EVNQITNSET 251 300 ENSBTAP00000056186/1-1051 LPTLRNLTKD SQSKLFYKTF RSEHSLPAQH STPTTLMPAL NFMITSKYSC ENSP00000263468/1-1117 LSSIDSLEAT EHEEI-YLTL NKEHSTSIQR -NTISLKPA- --NMQSTNLS ENSTTRP00000010459/1-1085 LSSIDSLEAR ECEEI-YLKL NKEPSTSIQQ QNSISLKST- --NLQSTNLS bmy_07916T0/1-1028 LSSIDSLEAG EHEEI-YLTL NKEPSTSIQQ QNSISLKSA- --NLQSTNLS BACU014492/1-862 LSSIDSLEAG EREEI-YLTL NKEPSTSIQQ QNSISLKSA- --NLQSTNLS 301 350 ENSBTAP00000056186/1-1051 CCPENKLRNQ RSQLQIKNIL TRTKQSTAPS VSAFGTVILI DNEAPKSSMT ENSP00000263468/1-1117 CFDEDKLAFS KTQ-HINNWL TNLDASNTQN VTAFSDILSK SNVLPSWEY- ENSTTRP00000010459/1-1085 CFDEDKLSFS KTQ-YINNWL INLDDPNTQT VTPFSDILSK PNVLPSRKC- bmy_07916T0/1-1028 CFDEDKLSFS KTQ-HINNWL INLDNPNTQT VTPFSDILSK PNVLPSHKC- BACU014492/1-862 CFDEDKLSFS KTQ-HINNWL INLDDPNTQA VTPFSDILSK PNVLPSHKC- 351 400 ENSBTAP00000056186/1-1051 LTRISSRLHL VTDINCTRLN RSETNNNQLP FL--QKIYVQ NAKKNYNSTL ENSP00000263468/1-1117 ---FNSKEQN PSPLNGTVER ATNTANNSVP FVSSPPMFVL DKKCEKTSET ENSTTRP00000010459/1-1085 ---LNSEEQN SSALSRTVER ATNTANNSVA FVYSPPIFVK DIKSKKTSET bmy_07916T0/1-1028 ---LNSEEQN SSALSRTVER ATNTANNSVA FVYSPPVFVK DKKSKKTSET BACU014492/1-862 ---LNSEEQN SSLLSRTVER ATNTANDSVA FVYSPPIFVK DKKSKKTSET 401 450 ENSBTAP00000056186/1-1051 FQTKNTHMMY TNFKKQXPLV TESPKFKFSK AWATPDSLTQ EITIISDQEK ENSP00000263468/1-1117 STMRTTDSTS GAFKRERPLV TESPTFKFSK SQSTSDSLTQ EVATFPDQEK ENSTTRP00000010459/1-1085 SAMRTTDTTP GSFKRERPLV TESPTFKFSK AQANPDSPTQ EMATISDQEK bmy_07916T0/1-1028 SAMRTTDTTS GAFKRERPLV TESPTFKFSK AQATPDSPTQ EMATISDQEK BACU014492/1-862 RDMRTTDTTS GAFKRERPLV TESPTFKFSK AQATPDSPTQ EMATISDQEK 451 500 ENSBTAP00000056186/1-1051 YSEMTQENRT TSVPTSFVPL ATPLVLPSNT QSARPLPKSS IHIKEIDPVQ ENSP00000263468/1-1117 YSELNQENGT TSIPTSCVPV ATPLVLPSNI QSARPSAKNS IHIKEIDAVQ ENSTTRP00000010459/1-1085 YSELTQENRT TSVPTSFVPV AKPLVLPSNT QSARPLPKKS IHIKEIDPVQ bmy_07916T0/1-1028 YSELTQENRT TSVPTSFVPV ATPLVLPSNT QSARPLPKNS IYIKEIDPVQ BACU014492/1-862 YSELTQENRT TSVPTSFVPV ATPLVLPLNT QSARPLPKNS IHIKEIDPVQ 501 550 ENSBTAP00000056186/1-1051 CSDKLGEMKD IKDEKTKYSN CNEEELSSFS DNFQVACILH NSDSED-KQK ENSP00000263468/1-1117 CSDKLDELKD GKEEEIKYFN CNKEELPLFS DSFQDAYIPH NPDSKDEKQK ENSTTRP00000010459/1-1085 CSDKLGEMKD IKDEKIRYSN CDEEELSLFS DNFQAGCIPY NSESKDKKQK bmy_07916T0/1-1028 CSDKLGEMKD IKDEKIRYFN CNEEELSLFS DNFQAGCIPY NSDSKDKKQK BACU014492/1-862 CSDKLGEMKD SKDEKIRYFN CNEEELSLFS DNFQTGFIPY NSDSKDKKQK 551 600 ENSBTAP00000056186/1-1051 IHEASKSLSN IISNCDLVSQ HKKMKYNICE KNSVRFLKSI LKKESKYEHD ENSP00000263468/1-1117 LAETS-SLSN VTSNYDFVGQ HKKMKYNIHE RNGVRFLKSI LKKESKYEHG ENSTTRP00000010459/1-1085 IAEASTSLYN IISNCDLVGQ HRKMKCNIHE RNGVRFLKSI LKKESKYEHD bmy_07916T0/1-1028 IAEASTSLYS IISNCDLVGQ HKKMKCSIHE RNGVRFLKSI LKKESKYKHD BACU014492/1-862 IAEASTSLYS IISNCDIVGQ HKKMKCNIHE RNGVRFLKSI LKKESKYKHD 601 650 ENSBTAP00000056186/1-1051 YFKALVTNQG FKLGNQKAAD IRDSIELTKE KGKSAETPKT IKKLRWFDET ENSP00000263468/1-1117 YLKALIINQS FKFGNQKAAA IRDSIELTKE KG--AEIPKT IKKLRWFDET ENSTTRP00000010459/1-1085 YFKALVTNQG FKLGNQKAAD IRDSIELTKE KGKSAEIPKI IKKLRWIDET bmy_07916T0/1-1028 YFKALVTNQG FKLGNQKAAD IRDSIELTKE KGKSAEIPKT IKKLRWFDET BACU014492/1-862 YFKALVTNQG FKLGNQKAGD IRDSIELTKE KGKSAEIPKT IKKLRWFDET 651 700 ENSBTAP00000056186/1-1051 GNTRKNAEDS HLLKSRKRVS QQWSQPSHIR AKSGAASNMP S-IPASAVDS ENSP00000263468/1-1117 SNIENNAENS HSLKNKTGTT QQHSQQFHIQ --SGAGSNII S-VSTCAVNS ENSTTRP00000010459/1-1085 EDTEKHVEDN HSLKNRIGIT QQWSQQFHIQ TKSVAASNIT SIIPASSVNS bmy_07916T0/1-1028 EDTEKNVEDN HSLKNIIGIT QQWSQPFHIQ TKSVAASNIT SIIPAASVNS BACU014492/1-862 EDTEKNVEDN HSLKNRIGIT QQWSQPFHIQ TKSVAASNIT SIIPASSVNS 701 750 ENSBTAP00000056186/1-1051 ANKKEPKDDF ISENVTALGG SGTDHVPLNC FIPSGYNTAK QAWPDFTEEE ENSP00000263468/1-1117 ADTKKSREDS ISENVTTLGG SGADHMPLNC FIPSGYNFAK HAWPASKKEE ENSTTRP00000010459/1-1085 ADKKKPKDDF ISENVTALGG SGIDHVPLNC FIPSGYNIAK QAWPDSKEEE bmy_07916T0/1-1028 ADKKKPKDDF ISENVTALGG SGIDHVPLNC FIPSGYNIAK QAWPDSKEEE BACU014492/1-862 ADKKKPKDDF ISENVTALGG SGIDHMPLNC FIPSGYNIAK QAWPDSKEEE 751 800 ENSBTAP00000056186/1-1051 SISPVKSGGS KTQKTNPQRS EAKVIRRTRS AKVQSGFVCM NRKGTVTRPQ ENSP00000263468/1-1117 SKIPVHD-DS KTKQGKPQRG RAKIIRKPGS AKVQSGFICT NRKGAVIQPQ ENSTTRP00000010459/1-1085 SKSPVNSGGS KTQKTNPQKG GAKVIRKTRS AKVQSGFIYT NRKGAV-RPQ bmy_07916T0/1-1028 SKSPVNSGGS KTQKTNPQKG GAKVIRRTRS AKVQSGFIYT NRKGAVIRPH BACU014492/1-862 SKSPVNSGGS KTQKNNPQKG GAKVIRRTRS AKVQSGFIYT NRKGAVIRPH 801 850 ENSBTAP00000056186/1-1051 SASKANTFVQ AQGKLIVPHP PPTSQLNIRS CKNVQASQCQ SVMPENSQNI ENSP00000263468/1-1117 SASKVNIFTQ AQGKLIIPCP PPQSTSNIRS GKNIQVSQCQ PVTPENPQNI ENSTTRP00000010459/1-1085 SASKANTFLQ AQGKLIVPH- PPKSLLNIRS CKNIQVSQYQ TVMPENSQNI bmy_07916T0/1-1028 SASKANTFLQ AQGKLIVPHP PPKSQLNIRS CKNIQVSQYQ SVMPENSQNI BACU014492/1-862 SASKANTFLQ AQGKLIVPHP PPKSQLNIRS CKNIQVSQYQ SVMPENSQNI 851 900 ENSBTAP00000056186/1-1051 STCNYFNSKH MLPTEYKLNQ WNQESSLPLP HVCSDLVTVM PALP-YCSSE ENSP00000263468/1-1117 ITHNSFNSKH VLPTEHSLNQ WNQESSSPLS NACSDLVTVI PSLPSYCSSE ENSTTRP00000010459/1-1085 STCDYVNSKH VLPTEHKLNQ WNQESSLPLS HVCPDLVTAM PSLP-YCSSE bmy_07916T0/1-1028 STCDYVNSKH VLPTEHKLNQ WNQESSLPLS RVCPDLVIVM PSLP-YCSSE BACU014492/1-862 NTCDYVNSKH VLPTEHKLNQ WNQESSLPLS HVCPDLVIVM PSLP-YCSSE 901 950 ENSBTAP00000056186/1-1051 CQTLTKINHS HGRQTVAPQD GTLYCPQRHP TYEESHPSVT LKTTREELVP ENSP00000263468/1-1117 CQTFAKINHS NGTQAVARQD ATLYCTQRSP VCEESYPSVT LRTAEEESVP ENSTTRP00000010459/1-1085 CQTLAKINHS NGNQMVAQQD GTLYYTQRCP AYEESHSSVT LKTTKEEFVP bmy_07916T0/1-1028 CQTLAKINHS NGNQMVAQQG GTLYCTQRCP TYEESHSSVT LKTTKEEFVP BACU014492/1-862 CQTLAKINHS NGNQMVAQQG GTLYCTQRCP TYEESHSSVT LKTTKEEFVP 951 1000 ENSBTAP00000056186/1-1051 LWKRQHNILG QNEKAADSSV TRRKRIVENK HKILLEQKRQ NPGSVGQKYS ENSP00000263468/1-1117 LWKRGPNVLH QNKRATGSTV MRRKRIAETK RRNILEQKRQ NPGSVGQKYS ENSTTRP00000010459/1-1085 LWKIQHNILG QNEKAAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_07916T0/1-1028 LWKIQHNILG QNEKAADSTV TRRKQIVENK HRSLLEQKRQ NPGSVGQKYS BACU014492/1-862 LWKIQHNILG QNEKAADSTV TRRKQIVENK HRSLLEQKRQ NPGSVGQKYS 1001 1050 ENSBTAP00000056186/1-1051 EQMNNFGQSI QLSSSEPKQT TRGTSNIEEV SGSTSEFLMA ENLVKASVPE ENSP00000263468/1-1117 EQINNFGQSV LLSSSEPKQT TRGTSYIEEV SDSTSEFLMA ENLVKASVPE ENSTTRP00000010459/1-1085 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX SGSTSEFLMA ENLVKASVPE bmy_07916T0/1-1028 EQMNNFGQSV QLSSSVPKQT TRATSNIEE- -GSTSEFLMA ENLVKASVPE BACU014492/1-862 EQMNNFGQSV QLSSSEPKQT TRATSNIEE- ---------- ---VKASVPE 1051 1100 ENSBTAP00000056186/1-1051 DEILTVMNSK QLQQTNLALN KMQQFNICAL SAEEQKILQS LNHLNERLYY ENSP00000263468/1-1117 DEILTVLNSK QIQKSNLPLN KTQQFNICTL SAEEQKILES LNDLSERLHY ENSTTRP00000010459/1-1085 DEILTVMNSK QLQKSNLTLN KTQQFNICAL SAGEQKILQS LNHLNARLH- bmy_07916T0/1-1028 DEILTVMNSK QLQKSNLTLN KTQQFNICAL SAEEQKILQS LNHLNARLH- BACU014492/1-862 DEILTVMNSK QLQKSNLTLN KTQQFNICAL SAEEQKILQS LNHLNARLH- 1101 1150 ENSBTAP00000056186/1-1051 IQETICKNPS IKSTLQIIPL LNSQPRTSPS DVGSRSQRKY ENSP00000263468/1-1117 IQESICKNPS IKNTLQIIPL LEKREDRTSS CRDKR----- ENSTTRP00000010459/1-1085 ---------- ---------- ---------- ---------- bmy_07916T0/1-1028 -----CKYGR TTFEIS---- ---------- ---------- BACU014492/1-862 -----CKYGR TPFVRNVEFY T--------- ----------