KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:09 2014 Check: 00 .. Name: ENSP00000360597/1-334 Len: 455 Check: 5812 Weight: 1.00 Name: ENSBTAP00000056192/1-262 Len: 455 Check: 880 Weight: 1.00 Name: bmy_13870T0/1-445 Len: 455 Check: 5140 Weight: 1.00 Name: ENSTTRP00000001974/1-276 Len: 455 Check: 6761 Weight: 1.00 // 1 50 ENSP00000360597/1-334 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056192/1-262 ---------- ---------- ---------- ---------- ---------- bmy_13870T0/1-445 MSSVGVRLRG RRCGPVAQAS PGCGAVDHTG EEGVASCQCC CWRRAKRSSG ENSTTRP00000001974/1-276 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000360597/1-334 ---------- ---------- ---------- ---------- ---MRGPSWS ENSBTAP00000056192/1-262 ---------- ---------- ---------- ---------- ---------- bmy_13870T0/1-445 LQDRWLAVPG AGYVPSLRPR RGTSRGTDGL PGRLGSWPPT VAPMRRPSFL ENSTTRP00000001974/1-276 ---------- ---------- ---------- ---------- ---MRSPSFL 101 150 ENSP00000360597/1-334 RPRPLLLLLL LLSPWPVWAQ VSATASPSGS L-----GAPD CPEVCTCVPG ENSBTAP00000056192/1-262 ---------- ---------- ---------- ---------- ---------- bmy_13870T0/1-445 SRRPPPLFLL LLSLWPVWIQ APPAAAPSAT PASATPGAPD CPETCACAPE ENSTTRP00000001974/1-276 SRRPPPLFLL LLSPWPVWIQ APPAAAPAAT P-----GAPD CPEACACAPE 151 200 ENSP00000360597/1-334 GLASCSALSL PAVPPGLSLR LRALLLDHNR VRALPPGAFA GAGALQRLDL ENSBTAP00000056192/1-262 ---------- --VPGGLNRR VRVLLLNHNR VHALPPGAFV DAGALLRLDL bmy_13870T0/1-445 GQANCSGRAL PAVPGGLSQR VRALLLDHNR VRALPPGAFV GAGALLHLDL ENSTTRP00000001974/1-276 GQANCSGRAL PAVPGGLSQR VRALLLDHKR VRALPPGAFV GAGALLHLDL 201 250 ENSP00000360597/1-334 RENGLHSVHV RAFWGLGALQ LLDLSANQLE ALAPGTFAPL RALRNLSLAG ENSBTAP00000056192/1-262 RENGLRWVHA RAFWGLGALE QLDLSANQLE ALLPGTFAPL RALRALSLAE bmy_13870T0/1-445 RENGLRWVHA RAFWGLDALK QLDLSANQLE ALVPGTFAPL RALCVLSLAG ENSTTRP00000001974/1-276 RENGLRWVHA RAFWGLGALK QLDLSANQLE ALVPGTFAPL RALCVLSLAG 251 300 ENSP00000360597/1-334 NRLARLEPAA LGALPLLRSL SLQDNELAAL APGLLGRLPA LDALHLRGNP ENSBTAP00000056192/1-262 NRLARLEPAV LGALPLLRAL SLQDNDLPAL ASGLLAGLPA LNTLRLRGNP bmy_13870T0/1-445 NRLARLEPAA LGPLPLLRTL SLQDNELPAL APALLAGLPA LNTLRLRGNP ENSTTRP00000001974/1-276 NRLARLEPAA LGTLPLLSTL SLQDNELPAL APALLAGLPA LSTLRLRGNP 301 350 ENSP00000360597/1-334 WGCGCALRPL CAWLRRHPLP AS-------- ---------- -----EAETV ENSBTAP00000056192/1-262 WTCGCALRPL CAWLRGHPRH AP-------- ---------- -----EAETL bmy_13870T0/1-445 WACGCALRPL CAWLRRHPLP APALGGAGGT GHCRRRRLTP LPCPAEAETL ENSTTRP00000001974/1-276 WACGCALRPL CTWLRRHPLP AP-------- ---------- -----EAETL 351 400 ENSP00000360597/1-334 LCVWPGRLTL SPLTAFSDAA FSHCAQPLAL RDLAVVYTLG PASFLVSLAS ENSBTAP00000056192/1-262 LCVSPGRLTL SPLTAFPDAA FSHCARPLAA RDLAVIYGLG PVSFLASLAA bmy_13870T0/1-445 ICVSPGRLTL SPLTAFPDAA FSHCARPLAA RELAVVYALG PVSFLASLAA ENSTTRP00000001974/1-276 ICVSPGRLTV SPLTAFPDAA FNHCARPLAA RELAVVYALG PVSFLAS--- 401 450 ENSP00000360597/1-334 CLALGSGLTA CRARRRRLRT AALRPPRPPD PNPDPDPHGC ASPADPGSPA ENSBTAP00000056192/1-262 CLALGSAFTA CGARHRRRRR AAARRQQRRQ PDPCP---GT ASPA-----A bmy_13870T0/1-445 CLALGSVLTA CRTRRRR--- AAARRPPRSL PDPGA---GM ASPA----AV ENSTTRP00000001974/1-276 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000360597/1-334 AAAQA ENSBTAP00000056192/1-262 TAAQA bmy_13870T0/1-445 AAAQA ENSTTRP00000001974/1-276 -----