KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:10 2014 Check: 00 .. Name: ENSP00000359045/1-986 Len: 992 Check: 4500 Weight: 1.00 Name: ENSBTAP00000056202/1-951 Len: 992 Check: 865 Weight: 1.00 Name: ENSTTRP00000007053/1-917 Len: 992 Check: 9594 Weight: 1.00 Name: bmy_18752T0/1-895 Len: 992 Check: 3712 Weight: 1.00 Name: BACU011420/1-482 Len: 992 Check: 4668 Weight: 1.00 // 1 50 ENSP00000359045/1-986 MAAHGKLRRE RGLQAEYETQ VKEMRWQLSE QLRCLELQGE LRRELLQELA ENSBTAP00000056202/1-951 MATHGKLRRE RGPQADYEAQ VKEMRWQLGE QLRCLELQGE LRRELLQELA ENSTTRP00000007053/1-917 ---------- ---------- ---MPW-LGE QLRCLELQGE LRRELLQELA bmy_18752T0/1-895 ---------- ---------- ---MRWQLGE QLRCLELQGE LRRELLQELA BACU011420/1-482 ---------- ---------- ---MRWQLGE QLRCLELQGE LRRELLQELA 51 100 ENSP00000359045/1-986 EFMRRRAEVE LEYSRGLEKL AERFSSRGGR L-GSSREHQS FRKEPSLLSP ENSBTAP00000056202/1-951 EFMRRRAEVE LEYSRGLDKL VERFSGRGGR LGGSSREHQS FRKEPSLLSP ENSTTRP00000007053/1-917 EFMRRRAEVE LEYSRGLDKL VERFSGRAGR LGGGSREHQS FRKEPSLLSP bmy_18752T0/1-895 EFMRRRAELE LEYSRGLDKL VERFSGRAGR LGGGSREHQS FRKEPSLLSP BACU011420/1-482 EFMRRRAELE LEYSRGLDKL VERFSGRAGR LGGGSREHQS FR-------- 101 150 ENSP00000359045/1-986 LHCWAVLLQH TRQQSRESAA LSEVLAGPLA QRLSHIAEDV GRLVKKSRDL ENSBTAP00000056202/1-951 LHCWAVLLQQ TRQQSRESTA LSEVLGGPLA QRLSYIAEDV GRLVKKSKDL ENSTTRP00000007053/1-917 LHCWAVLLQQ TRQQSRESAA LGDMLGGPLA QRLSHIAEDV GRIVKKSKDL bmy_18752T0/1-895 LHCWAVLLQQ TRQQSRESAA LSDVLGGPLA QRLSHIAEDV GRI---SKDL BACU011420/1-482 ---W------ ---------- ---------- ---------- ---------- 151 200 ENSP00000359045/1-986 EQQLQDELLE VVSELQTAKK TYQAYHMESV NAEAKLREAE RQEEKRAGRS ENSBTAP00000056202/1-951 EQQLQEELLE VVSELQMAKK TYQVYHTESL SAEAKLREAE RQEEKRAGRS ENSTTRP00000007053/1-917 EQQLQEELLE VVSELQTAKK TYQVYHMESV NAEAKLREAE RQEEKRACRS bmy_18752T0/1-895 EQRLQEELLE VVSELQTAKK TYQVYHMESM NAEAKLREAE RQEEKRACRS BACU011420/1-482 ---------- ---------- ---------- ---AKLREAE RQEEKRACRS 201 250 ENSP00000359045/1-986 VPTTTAGATE AGPLRKSSLK KGGRLVEKLW PPQRPVAASS CAPVCWLQAG ENSBTAP00000056202/1-951 ATATTTS-TE SGPLRKGSVK KGGRLVEK-- ---------- ---------- ENSTTRP00000007053/1-917 A-----G-TE AGPLRKGSLK KGGRLVEK-- ---------- ---------- bmy_18752T0/1-895 A-----G-TE AGPLRKGSLK KGGRLVEK-- ---------- ---------- BACU011420/1-482 A-----G-TE AGPLRKGSLK KGGRLVEK-- ---------- ---------- 251 300 ENSP00000359045/1-986 FLVHPPWWGA MCAPSTHQRQ AKFMEHKLKC TKARNEYLLS LASVNAAVSN ENSBTAP00000056202/1-951 ---------- --------RH AKFLEHKLKC TKARNEYLLS LASVNAAVSN ENSTTRP00000007053/1-917 ---------- --------RH AKFLEHKLKC TKARNEYLLS LASVNAAVNN bmy_18752T0/1-895 ---------- --------RH AKFLEHKLKC TKARNEYLLS LASVNAAVNN BACU011420/1-482 ---------- --------RH AKFLEHKLKC TKARNEYLLS LASVNAAVNN 301 350 ENSP00000359045/1-986 YYLHDVLDLM DCCDTGFHLA LGQVLRSYTA AESRTQASQV QGLGSLEEAV ENSBTAP00000056202/1-951 YYLRDVMDLM DCCDTGFHLA LGQVLRSYTA AESRIQASQM QGLGSLEEAV ENSTTRP00000007053/1-917 YYVRDVLDLM DCCDTGFHLA LGQVLRSYTA AESRTQASQL QGLGSLEEVV bmy_18752T0/1-895 YYLRDVLDLM DCCDTGFHLA LGQVLRSYTA AESRTQASQM QGLGSLEEVV BACU011420/1-482 YYLRDVLDLM DCCDTGFHLA LGQVLRSYTA AESRTQASQM QGLGSLEEVV 351 400 ENSP00000359045/1-986 EALDPPGDKA KVLEVHATVF CPPLRFDYHP HDGDEVAEIC VEMELRDEIL ENSBTAP00000056202/1-951 DALDPIGDKA KVLEVHAIAF CPPLRFDYQP HEGDEVAEIQ VEMELRDEIL ENSTTRP00000007053/1-917 EALDPPGDKA KVLEVHAAAF CPPLRFDYQP HEGDEVAEIR VEMELRDEIL bmy_18752T0/1-895 EALDPPGDKA KVLEVHAAAF CPPLRFDYQP HEGDEVAEIR VEMELRDEIL BACU011420/1-482 EALDPPGDKA KVLEVHAAAF CPPLRFDYQP HEGDEVAEIR VEMELRDEIL 401 450 ENSP00000359045/1-986 PRAQNIQSRL DRQTIETEEV NKTLKATLQA LLEVVASDDG DVLDSFQTSP ENSBTAP00000056202/1-951 PRAQNIQSRL DRQTIETEEV NKTLKATLQA LLEVVASEDS DMLDSFQASL ENSTTRP00000007053/1-917 PRAYNIRSRL DRQTIETEEV NKTLKATLQA LLEVVASEDG DMLESFQASP bmy_18752T0/1-895 PRAQNIQSRL DRQTIETEEV NKTLKATLQA LLEVVASEDG DMLDSFQASP BACU011420/1-482 PRAQNIQSRL DRQTIETEEV NKTLKATLQA LLEVVASEDG DMLDSFQASP 451 500 ENSP00000359045/1-986 STESLKSTSS DPGSRQAGRR RGQQQETETF YLTKLQEYLS GRSILAKLQA ENSBTAP00000056202/1-951 STESLKSTSS DPGARQAGRR RGQQQETETF YITKLQEYVS GRSILAKLQA ENSTTRP00000007053/1-917 STESLKSTSS DPGVRQASRR RGQQQETETF YITKLQEYLS GRSILAKLQA bmy_18752T0/1-895 STESLKSTSS DPGVRQAGRR RGQQQETETF YVTKLQEYLS GRSILTKLQA BACU011420/1-482 STESLKSTSS DPGVRQAGRR RGQQQETETF YVTKLQEYLS GRSVLTKLQA 501 550 ENSP00000359045/1-986 KHEKLQEALQ RGDKEEQEVS WTQYTQRKFQ KSRQPRPSSQ YNQRLFGGDM ENSBTAP00000056202/1-951 KHEKLQDAIQ RGDKEDREVT WTQYTQRKLQ KSRAPRPSSQ YNQKLFGGDM ENSTTRP00000007053/1-917 KHEKLQEAIQ RGDKEEREVS RTQYTQRKLQ KSRLPRPSSQ YNQKLFGGDM bmy_18752T0/1-895 KHEKLQEAIQ RGDKEEREVS WTQYTQRKLQ KSRLPRPSSQ YNQKLFGGDM BACU011420/1-482 KHEKLQEAIQ RGDKEEREVS WTQYTQRKLQ KSRLPRPSSQ YNQKLFGGDM 551 600 ENSP00000359045/1-986 EKFIQSSGQP VPLVVESCIR FINLNGLQHE GIFRVSGAQL RVSEIRDAFE ENSBTAP00000056202/1-951 EKFIQSSGQP VPLVVESCVR FINLNGLQHE GIFRVSGAQP QISEIRDAFE ENSTTRP00000007053/1-917 EKFIQSSGQS VPLVVESCIR FINLNGLQHE GIFRVSGAQP RVSEIRDAFE bmy_18752T0/1-895 EKFIQSSGQS VPLVVESCVR FINLNGLQHE GIFRVSGAQP RVSEIRDAFE BACU011420/1-482 EKFIQSSGQS VPLVVESCVR FINLN----- ---------- ---------- 601 650 ENSP00000359045/1-986 RGEDPLVEGC TAHDLDSVAG VLKLYFRSLE PPLFPPDLFG ELLASSELEA ENSBTAP00000056202/1-951 RGEDPLVEGC TAHDLDSVAG VLKLYFRSLQ PPIFPPDLFG ELLASAELEA ENSTTRP00000007053/1-917 RGEDPLVEGC TAHDLDSVAG VLKLYFRSLQ PPIFPPELFR ELLASAEAEA bmy_18752T0/1-895 RGEDPLVEGC TAHDLDSVAG VLKLYFRCLQ PPIFPPELFR ELLASAEAEA BACU011420/1-482 ---------- ---------- ---------- ---VPP---- ---------- 651 700 ENSP00000359045/1-986 TAERVEHVSR LLWRLPAPVL VVLRYLFTFL NHLAQYSDEN MMDPYNLAVC ENSBTAP00000056202/1-951 VAERVEHVAG LLARLPGPVL VVLRYLFTFL NHLAQYSDEN MMDPYNLAVC ENSTTRP00000007053/1-917 AAEWVEHVSR LLARLPAPVL VVLRYLFAFL NHLAQYSDEN MMDAYNLAVC bmy_18752T0/1-895 AAEWVERVSS LLARLPGPVL VVLRYLFTFL NHLAQYSDEN MMDAYNLAVC BACU011420/1-482 ---------- --SKASG--- ---------- ---------- ----YRL--- 701 750 ENSP00000359045/1-986 FGPTLLPVPA GQDPVALQGR VNQLVQTLIV QPDRVFPPLT SLPGPVYEKC ENSBTAP00000056202/1-951 FGPTLLPVPA GQDPVALQGR VNQLVQTLII QPGRVFPAPA QLPGPVYEKC ENSTTRP00000007053/1-917 FGPTLLPVPA GQDPVALQGR VNQLVQTVIV QPSRVFPPLA QLPGPVYEKC bmy_18752T0/1-895 FGPTLLPVPA GQDPVALQGR VNQLVRTLIM QPSRAFPPPA LLPGPVYEKC BACU011420/1-482 ---------- ---------- ---------- RPPSVFS--- --PG------ 751 800 ENSP00000359045/1-986 MAPPSASCLG DAQLESLGAD NEPELEAEMP AQEDDLEGVV EAVACFAYTG ENSBTAP00000056202/1-951 MAPPSASCLG DAQLEGPTGD NELELEPGTS AQEEDQEGVV EAVACFAYTG ENSTTRP00000007053/1-917 MAPPSASCLG DAQLEGPAGE NEPEPEAGSL APEDDPEGVV EAVACFAYTG bmy_18752T0/1-895 MAPPSASCLG AWPRR----- ---------- ---------- MAVACFAYTG BACU011420/1-482 ---------- ---------- ---------- ---HEAVGAD LALSC----- 801 850 ENSP00000359045/1-986 RTAQELSFRR GDVLRLHERA SSDWWRGEHN GMRGLIPHKY ITLPAGTEKQ ENSBTAP00000056202/1-951 RTAQELTFQR GDILRLHERA SGDWWRGEHA GARGLIPHKY ITLPAGAEKL ENSTTRP00000007053/1-917 RTAQELTFQR GDVLRLHERA SGDWWRGEHA GARGLIPHKY ITLPAGAEKL bmy_18752T0/1-895 RTAQELTFQR GDVLRLHERA SGDWWRGEHA GARGLIPHKY ITLPAGAEKL BACU011420/1-482 ---------- ---------- ---------- --RSLALH-- ---PAG---- 851 900 ENSP00000359045/1-986 VVGAGLQTAG ESGSSPEGLL ASELVHRPEP CTSPEAMG-- ---PSGHRRR ENSBTAP00000056202/1-951 AAGQGLLAAG DLLSSSEGLP MVELVQRPEP CTPPEIPLGI PGSHSGYRRP ENSTTRP00000007053/1-917 AVGQGLPAAG VAESSPEALP VMQFVQXXXX XXXXXXXX-- ---XXXXXXX bmy_18752T0/1-895 AVGQGLPAAG ELVSSPEALP AMELVQRPEP CTQPEAPLGT PGGPSGHRRR BACU011420/1-482 AASDGLEQEG ASV------- ---------- ---------- ---------- 901 950 ENSP00000359045/1-986 CLVPASPEQH VEVDKAVAQN MDSVFKELLG KTSVRQGLGP ASTTSPSPGP ENSBTAP00000056202/1-951 CVVPASPERH VEVDKAVAQT MDSVFKELLG KTALRQGLGP GTNNSSSPGP ENSTTRP00000007053/1-917 XXXXXXXXXX XXXXXAVAQT MDSVFKELLG KTAVRQGLGP ASTISPGPGP bmy_18752T0/1-895 CLVPASPERH VEVDKAVAQT MDSVFKELLG KTAVRQGLGL ASTVSPGPAP BACU011420/1-482 ---------- ---------- ---------- -------LGF AHSAE---GP 951 1000 ENSP00000359045/1-986 RSPKAPPSSR LGRNKGFSRG PGAPASPSAS HPQGLDTTPK PH ENSBTAP00000056202/1-951 RSPKPPGCGR LGKNKGFSRG PGAPASPSTS HPQGLDSPFK SH ENSTTRP00000007053/1-917 RSLKTVACGR PGKNKGFSRG PGAPASLLAS QPQDLDSPLK PH bmy_18752T0/1-895 RSPKPVACGR LGKNKGFSRG PGAPASLLAS HPQGLDSPLK PH BACU011420/1-482 RS-------- ---------- ---------- ---------- --