KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:11 2014 Check: 00 .. Name: bmy_17390T0/1-397 Len: 805 Check: 4832 Weight: 1.00 Name: BACU009310/1-631 Len: 805 Check: 8245 Weight: 1.00 Name: ENSTTRP00000014622/1-480 Len: 805 Check: 4296 Weight: 1.00 Name: ENSP00000377370/1-431 Len: 805 Check: 3964 Weight: 1.00 Name: ENSBTAP00000056206/1-437 Len: 805 Check: 7481 Weight: 1.00 // 1 50 bmy_17390T0/1-397 MAVDDVRFKA YYSLGVLQDD SYEPQGYVVD VMKPSWSDAD QSHDCVKQAK BACU009310/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014622/1-480 ---------- ---------- --PSQPHRAD CGRAAGLGAP GCPESESPAR ENSP00000377370/1-431 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056206/1-437 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_17390T0/1-397 FLQSQVRGRK GIDVEDSKSA LPVLRKLETN AVLSTRSLDA HMSHLWVHCD BACU009310/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014622/1-480 SSAAATRSRA GGGRAPRGPG ---------- ---------- ---------- ENSP00000377370/1-431 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056206/1-437 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_17390T0/1-397 KFWIVVPLIL GKELCSCCKP HSLMTLMLMS PNQFCGCYGE SYDKEKHQKS BACU009310/1-631 ---------- ---------- ------LFFP P--------- ---------- ENSTTRP00000014622/1-480 ---------- -----MTCRG SPLAPLLLLS ---------- ---------- ENSP00000377370/1-431 ---------- -----MTSQR SPLAPLLLLS ---------- ---------- ENSBTAP00000056206/1-437 ---------- -----MTCRG SPLAPLLLFS ---------- ---------- 151 200 bmy_17390T0/1-397 DRTTKLNLNS VGSVGKELSL RLNHSTSVAA SLEVSESPGS VQVARGQTAV BACU009310/1-631 ---------- ---------- ----SIGVAA SLEVSESPGS VQVARGQTAV ENSTTRP00000014622/1-480 ---------- ---------- ----LHGVAA SLEVSESPGS VQVARGQTAV ENSP00000377370/1-431 ---------- ---------- ----LHGVAA SLEVSESPGS IQVARGQPAV ENSBTAP00000056206/1-437 ---------- ---------- ----LHGVAA SLEVSESPGS VQVARGQTAV 201 250 bmy_17390T0/1-397 LPCTFSTSAA LINLNVIWMV IPLSNANQPE QVILYQGGQM FDGAPRFHGR BACU009310/1-631 LPCTFSTSAA LINLNVIWMV IPLSNANQPE QVILYQGGQM FDGAPRFHGR ENSTTRP00000014622/1-480 LPCTFTTSAA LINLNVIWMV IPLSNANQPE QVILYQSGQM FDGAPRFHGR ENSP00000377370/1-431 LPCTFTTSAA LINLNVIWMV TPLSNANQPE QVILYQGGQM FDGAPRFHGR ENSBTAP00000056206/1-437 LPCTFTTSAA LINLNVIWMV IPLSNANQPE QVILYQGGQM FDGAPRFHGR 251 300 bmy_17390T0/1-397 VGFTGTMPAT NVSIFINNTQ LSDTGTYQCL VNNLPDRGGR NIGVTGLTVL BACU009310/1-631 VGFTGTMPAT NVSIFINNTQ LSDTGTYQCL VNNLPDRGGR NIGVTGLTVL ENSTTRP00000014622/1-480 VGFIGTMPAT NVSIFINNTQ LSDTGTYQCL VNNLPDRGGR NIGVTGLTVL ENSP00000377370/1-431 VGFTGTMPAT NVSIFINNTQ LSDTGTYQCL VNNLPDIGGR NIGVTGLTVL ENSBTAP00000056206/1-437 VGFTGTMPAT NVSIFINNTQ LSDTGTYQCL VNNLPDRGGR NIGVTGLTVL 301 350 bmy_17390T0/1-397 VPPSAPHCQI QGPQDIGSDV ILLCSSEEGT PRPTYLWEKL DSSLQLPPTA BACU009310/1-631 VPPSAPHCQI QGPQDIGSDV ILLCSSEEGT PRPTYLWEKL DSSLQLPPTA ENSTTRP00000014622/1-480 VPPSAPHCQI QGPQDIGSDV ILLCSSEEGT PRPTYLWEKL DSSLQLPPTA ENSP00000377370/1-431 VPPSAPHCQI QGSQDIGSDV ILLCSSEEGI PRPTYLWEKL DNTLKLPPTA ENSBTAP00000056206/1-437 VPPSAPHCQI QGSQDIGSDV ILLCSSEEGI PRPTYLWEKL DNTLKLPPTA 351 400 bmy_17390T0/1-397 T--------- ---------- ---------- ---------- ---------- BACU009310/1-631 TQALEEKIER EKELSEDTLS VEEKANTHLL LGMCLDTYVR YLLFSKQPSQ ENSTTRP00000014622/1-480 T--------- ---------- ---------- ---------- ---------- ENSP00000377370/1-431 T--------- ---------- ---------- ---------- ---------- ENSBTAP00000056206/1-437 T--------- ---------- ---------- ---------- ---------- 401 450 bmy_17390T0/1-397 ---------- ---------- ---------- ---------- ---------- BACU009310/1-631 AQRMYEEALQ ISEEILGGRH PQTIVLLSDL ATTLYAQGSS DEARVHAQRA ENSTTRP00000014622/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000377370/1-431 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056206/1-437 ---------- ---------- ---------- ---------- ---------- 451 500 bmy_17390T0/1-397 ---------- ---------- ---------- ---------- ---------- BACU009310/1-631 SDLVRQVEHP ELHVLLSNLA AALTHRERYA QAEEIYQEAL KCSVESFPVA ENSTTRP00000014622/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000377370/1-431 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056206/1-437 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_17390T0/1-397 ---------- ---------- ---------- ---------- ---------- BACU009310/1-631 LMCPTGAVEE PVPWTLALAF GVWVSVSSCV VRFSLSPGRM HSVDVLTWIG ENSTTRP00000014622/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000377370/1-431 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056206/1-437 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_17390T0/1-397 ---------- ---------- ---------- ---------- ---------- BACU009310/1-631 CCVESFITLP QNQVQGTVTI RNISALSSGL YQCVASNAIG TSTCLLDLQV ENSTTRP00000014622/1-480 ---------- QDQVQGTVTI RNISALSSGL YQCVASNAIG TSTCLLDLQV ENSP00000377370/1-431 ---------- QDQVQGTVTI RNISALSSGL YQCVASNAIG TSTCLLDLQV ENSBTAP00000056206/1-437 ---------- QDQVQGTVTI RNISALSSGL YQCVASNAIG TSTCLLDLQV 601 650 bmy_17390T0/1-397 ---------- ---------- ---------- ---------- -QEEKIEREK BACU009310/1-631 ISPQPRSIGL IAGTIGTGAV IIIFCIALIL GAFFYWRSKN KEEEEEEIPN ENSTTRP00000014622/1-480 ISPQPRSIGL IAGAIGTGAV IIIFCIALIL GAFFYWRSKN KAEEEEEIPN ENSP00000377370/1-431 ISPQPRNIGL IAGAIGTGAV IIIFCIALIL GAFFYWRSKN KEEEEEEIPN ENSBTAP00000056206/1-437 ISPQPRSIGL IAGAIGTGAV IIIFCIALIL GAFFYWRSKN KEEEEEEIPN 651 700 bmy_17390T0/1-397 ELSEDTLSVE EKANTHLL-- ---------- ---------- ---------- BACU009310/1-631 EIREDDLPPK CPSSAKAFHT EVSFSESNTF TSSNTYNSRC WSNNPKVHRN ENSTTRP00000014622/1-480 EIREDDLPPK CPSSAKAFHT EVSSSESNTF TSSNTYNSRC WSNNPKVHRN ENSP00000377370/1-431 EIREDDLPPK C-SSAKAFHT EISSSDNNTL TSSNAYNSRY WSNNPKVHRN ENSBTAP00000056206/1-437 EIREDDLPPK CSSSAKAFHM EISSSENNTL TSSNTYNSRY WSSNPKAHRN 701 750 bmy_17390T0/1-397 ---LGMCVDT YARYLLFSKQ PS-------- ---------- ---------- BACU009310/1-631 TESLDHFSDL RQSFSLHSGH ANVPTVYANG SHLAPAPQKT LVVTANRGSS ENSTTRP00000014622/1-480 TQSLDHFSDL RQSFSLHSGH ANIPSVYANG SHLAPAPPKT LAVTANRGSS ENSP00000377370/1-431 TESVSHFSDL GQSFSFHSGN ANIPSIYANG THLVPGQHKT LVVTANRGSS ENSBTAP00000056206/1-437 TESFGHFGDL RQSFSLHSGN ASVPAIYANG SHLAPAPHKT LVVTANRGSS 751 800 bmy_17390T0/1-397 ---------- ---------- ---------- ---------- ---------- BACU009310/1-631 PQAVPRSNGS VSRTPRAQ-- ---YTHSYTI SQAGLERIGA VPVMVPAQSR ENSTTRP00000014622/1-480 PQAVSRSNGS VSRKPRAQ-- ---YTHSYTI SQASLERIGA VPVMVPAQSR ENSP00000377370/1-431 PQVMSRSNGS VSRKPRPP-- ---HTHSYTI SHATLERIGA VPVMVPAQSR ENSBTAP00000056206/1-437 PPAVSRSNGS VSRKARPPPV PSLHTHSYTV SQATLERIGA VPVMVPAQSR 801 850 bmy_17390T0/1-397 ----- BACU009310/1-631 AGSLV ENSTTRP00000014622/1-480 AGSLV ENSP00000377370/1-431 AGSLV ENSBTAP00000056206/1-437 AGSLV