KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:12 2014 Check: 00 .. Name: ENSTTRP00000007544/1-545 Len: 619 Check: 1944 Weight: 1.00 Name: bmy_05349T0/1-280 Len: 619 Check: 9390 Weight: 1.00 Name: ENSBTAP00000056222/1-448 Len: 619 Check: 602 Weight: 1.00 Name: ENSP00000312631/1-510 Len: 619 Check: 5956 Weight: 1.00 // 1 50 ENSTTRP00000007544/1-545 ---------- -KRTGGSYRM RLAE---RVF PLLGPQGAPP FPEEASSAPQ bmy_05349T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056222/1-448 MPRGFLVKRS KKSTPVSYRI RGGEDGDRAL LLLPGCGG-- -ARAS----- ENSP00000312631/1-510 MPRGFLVKRS KKSTPVSYRV RGGEDGDRAL LLSPSCGG-- -ARAEPPAPS 51 100 ENSTTRP00000007544/1-545 PGAERAGPPT PEEEAARELS GSSCREAGVS PAVGGREGAE WRADGREGPG bmy_05349T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056222/1-448 ---------- ---------- ---------- ---------- ---------- ENSP00000312631/1-510 PVPGPLPPPP PAERAHAALA AALACAPGPQ PPPQGPRAAH FGNPEAAHPA 101 150 ENSTTRP00000007544/1-545 PSPSPTKPAG AEL-RRAFLE RC--LSSPVS AESFP----- ---------- bmy_05349T0/1-280 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056222/1-448 ---------- -------XFE RSFNLGSPVS AESFPTPAAL LVGGGGGGGG ENSP00000312631/1-510 PLYSPTRPVS REHEKHKYFE RSFNLGSPVS AESFPTPAAL L----GGGGG 151 200 ENSTTRP00000007544/1-545 --------GG TATVAAFSCS VAPTAAPTSR EQFLLPLRAP FPDPALHPDP bmy_05349T0/1-280 ---------- ---------- ---------- ---------- ------MPVV ENSBTAP00000056222/1-448 GGANGAGGGG TCSGDPLLFA PAELKMGTAF SAAAEAARGP GPGPPLPPAA ENSP00000312631/1-510 GGASGAGGGG TCGGDPLLFA PAELKMGTAF SAGAEAARGP GPGPPLPPAA 201 250 ENSTTRP00000007544/1-545 APLSASLHGL KRATGGERCA KAPPGCTSGP AAAGVKKPKA MRKLSFTDEV bmy_05349T0/1-280 SYRPSR---- WRTA------ ---------- ---------- ---------- ENSBTAP00000056222/1-448 ALRPPG---- KRPSPPASAA AAAEPPAKVA KAPGSKKPKA IRKLHFEDEV ENSP00000312631/1-510 ALRPPG---- KRPPPP---- TAAEPPAKAV KAPGAKKPKA IRKLHFEDEV 251 300 ENSTTRP00000007544/1-545 TTSPVLGLKI KEEEPGAPSR GLGGSRTPLG EFICQLCKEQ YADPFALAQH bmy_05349T0/1-280 ---------I KEGPVEAPRG RAGSAARPLG EFICQLCKEE YADPFALAQH ENSBTAP00000056222/1-448 TTSPVLGLKI KEGPVEAPRG RAGGAARPLG EFICQLCKEE YADPFALAQH ENSP00000312631/1-510 TTSPVLGLKI KEGPVEAPRG RAGGAARPLG EFICQLCKEE YADPFALAQH 301 350 ENSTTRP00000007544/1-545 RCSRIVRVEY RCPECDKVFS CPANLASHRR WHKPRPAAAN AATVSSADGK bmy_05349T0/1-280 KCSRIVRVEY RCPECAKVFS CPANLASHRR WHKPRPA--- ---------- ENSBTAP00000056222/1-448 KCSRIVRVEY RCPECAKVFS CPANLASHRR WHKPRPA--- ---------- ENSP00000312631/1-510 KCSRIVRVEY RCPECAKVFS CPANLASHRR WHKPRPA--- ---------- 351 400 ENSTTRP00000007544/1-545 LPPSSTSSSP DSGAVASFLA EGKENNRAER TADQHPQAGD SS-GAEQHRD bmy_05349T0/1-280 -PAAARASEP ETAA------ ---------- ----RAEARE AT-GGGSDRD ENSBTAP00000056222/1-448 -PAAARACEP ETPA------ ---------- ----RAEARE ATGGGGSDRD ENSP00000312631/1-510 -PAAARAPEP EAAA------ ---------- ----RAEARE AP-GGGSDRD 401 450 ENSTTRP00000007544/1-545 SAPSQGLQVL SHPEPSLPQV PYTAGVLGRR VPEPGGVSAA GGPE-IFVCP bmy_05349T0/1-280 T--------- ---------- ---------- -PSPGGVSES GSEDGLYECH ENSBTAP00000056222/1-448 T--------- ---------- ---------- -PSPGGVSES GSEDGLYECH ENSP00000312631/1-510 T--------- ---------- ---------- -PSPGGVSES GSEDGLYECH 451 500 ENSTTRP00000007544/1-545 YCHKKFRRQA YLRKHLATH- ---EAGSARA LAPGF----- ---GSERAAP bmy_05349T0/1-280 HCAKKFRRQA YLRKHLLAHH QALQAKGA-P PAPPAEDLLA LYPGPDEKAP ENSBTAP00000056222/1-448 HCAKKFRRQA YLRKHLLAHH QALQAKGAPP PAPPAEDLLA LYPGPDEKVP ENSP00000312631/1-510 HCAKKFRRQA YLRKHLLAHH QALQAKGA-P LAPPAEDLLA LYPGPDEKAP 501 550 ENSTTRP00000007544/1-545 LAFA------ ---------- ---CPLCGAH FPSADIRDKH -RLWHAVREE bmy_05349T0/1-280 QEVAGDGEAA GVLGLSASAE CHLCPVCGET FPSKGAQERH LRLLHAA--- ENSBTAP00000056222/1-448 QEAAGDGEAA GVLGLSASAE CHLCPVCGET FPSKGAQERH LRLLHAA--- ENSP00000312631/1-510 QEAAGDGEGA GVLGLSASAE CHLCPVCGES FASKGAQERH LRLLHAA--- 551 600 ENSTTRP00000007544/1-545 LLLPALAGAP PAAPGPGGAS DGSAQQIFSC KHCPSTFFSS PGLTRHINKC bmy_05349T0/1-280 ---------- ---------- -----QVFPC KYCPATFYSS PGLTRHINKC ENSBTAP00000056222/1-448 ---------- ---------- -----QVFPC KYCPATFYSS PGLTRHINKC ENSP00000312631/1-510 ---------- ---------- -----QVFPC KYCPATFYSS PGLTRHINKC 601 650 ENSTTRP00000007544/1-545 HPSESRQVLL LQMPLRPGC bmy_05349T0/1-280 HPSENRQVIL LQVPVRPAC ENSBTAP00000056222/1-448 HPSENRQVIL LQVPVRPAC ENSP00000312631/1-510 HPSENRQVIL LQVPVRPAC