KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:13 2014 Check: 00 .. Name: ENSP00000351118/1-845 Len: 1251 Check: 5097 Weight: 1.00 Name: ENSBTAP00000056230/1-805 Len: 1251 Check: 7494 Weight: 1.00 Name: ENSTTRP00000010573/1-755 Len: 1251 Check: 126 Weight: 1.00 Name: bmy_04980T0/1-864 Len: 1251 Check: 4133 Weight: 1.00 Name: BACU003633/1-1003 Len: 1251 Check: 9058 Weight: 1.00 // 1 50 ENSP00000351118/1-845 ---------- ---------- ---------- -----MGSWA LLWPPLLFTG ENSBTAP00000056230/1-805 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010573/1-755 ---------- ---------- ---------- -----MVTWA LLLPLLV--- bmy_04980T0/1-864 GEGRPGRDCA SNTAAQRVPD ASRARTLPRG RPPAEMGARA LLLPLLV--- BACU003633/1-1003 ---------- ---------- ---------- -----MGTWA LLLPLLV--- 51 100 ENSP00000351118/1-845 LLVRPPGTMA QAQYCSVNKD IFEVEENTNV ---TEPLVDI HVPEGQEVTL ENSBTAP00000056230/1-805 ---------- ---VCSVDKT SLTVKENTNP ---GEPLLDI YVPQGQQVTL ENSTTRP00000010573/1-755 -------AVA QAQVCSVEKN FFEVXXXXXX XXHGQLLLNI TVPEGQQVTL bmy_04980T0/1-864 -------AAA QAQVCSVNKT FFQVKENTSP ---GQLLLDI YVPEGQQVTL BACU003633/1-1003 -------AAA QAQVCSVNKT FFEVKENTSP ---GQHLLDI YVPEGQQVTL 101 150 ENSP00000351118/1-845 GALSTPFAFR IQGNQLFLNV TPDYEEKSLL EAQLLCQSGG TLVTQLRVFV ENSBTAP00000056230/1-805 GPSSTLFAFR IQGNQLFLNV TPDYEANTML LAHLECRSGD SVVTQLRVFV ENSTTRP00000010573/1-755 GPSPTRFAFR IQGTQLFLNV TPDYEENSML EAVLECKRDD TVVTSLRVFV bmy_04980T0/1-864 GPSSTRFAFR IQGTQLFLNV TPDY------ ---------- ---------- BACU003633/1-1003 GPSSTRFAFR IQGTQLFLNV TPDYEENSRL QAVLECKRDD TVVTQLRVFV 151 200 ENSP00000351118/1-845 SVLDVNDNAP EFPFKTKEIR VEEDTKVNST VIPETQLQAE DRDKDDILFY ENSBTAP00000056230/1-805 SVLDVNDNPP RFPYETKLWE VPEDTRVNTT VISETELEAQ DQDKDDVLFY ENSTTRP00000010573/1-755 SVLDVNDNPP RFPFVVKVQR VPEDTKVNAV VIPETELKAQ DLDKDDVLFY bmy_04980T0/1-864 ---------- ---------- --EDAKVNAV VIPETELKAQ DLDRNDILFY BACU003633/1-1003 SVLDANDNAP RFPFIVKVQR VPEDTKVKAV VIPETELKAQ DLDRNDILFY 201 250 ENSP00000351118/1-845 TLQEMTAGAS DYFSLVSVNR PALRLDRPLD FYERPNMTFW LLVRDTPGEN ENSBTAP00000056230/1-805 TLQEVTLGAS SFFSLVGANR PALRLDQSLD LERWPNMTFR LLARDTQEET ENSTTRP00000010573/1-755 TLQEVTPGAS GFFSLVGANR PELRLDRSLD FDRWPNMTFQ LLVR-TREEN bmy_04980T0/1-864 TLQEVTPGAS GFFSLVGANR PELRLDRSLD FDRLPNMTFQ LLVRDTREEN BACU003633/1-1003 TLQEVTPGAS GFFSLVGANR PELRLDRSLD FDRWPNMTFQ LLVRDTREEN 251 300 ENSP00000351118/1-845 VEPSHTATAT LVLNVVPADL RPPWFLPCTF SDGYVCIQAQ YHGAVPTGHI ENSBTAP00000056230/1-805 TEPSHTATAT LVLEVQPVDL RPPWFLPCSY SDGFVCIHAE YHGAVPTGHR ENSTTRP00000010573/1-755 VEPSHTATAT LVLECGPADL RAPWFLPCTY SD-VVCVEVQ YHGAVPTGHT bmy_04980T0/1-864 VEPSHTATAT LVLEVQPANL RPPWFLPCTY SDGFVCIHAQ YHGAVPTGHT BACU003633/1-1003 VEPSHTATAT LVLEVQPADL RPPWFLPCTY SDGFVCIHAQ YHSAVPTGHT 301 350 ENSP00000351118/1-845 LPSPLVLRPG PIYAEDGDRG INQPIIYSIF RGNVNGTFII HPDSGNLTVA ENSBTAP00000056230/1-805 LPDPLILHPG PVYAMDGDQG INQPIKYSII SGNEDSTFSI SVDSGNLTMT ENSTTRP00000010573/1-755 LSGPLILHPG PIYAVDGDRG IHQPIVYSII RGNEDGSFSI DANTGNLTMT bmy_04980T0/1-864 LSGPLILHPG PIYAVDGDRG INQPIVYSII RGNEDGSFSI DANTGNLTVT BACU003633/1-1003 LSGPLILHPG PIYAVDGDRG INQPIVYSII RGNEDGSFSI DANTGNLTVT 351 400 ENSP00000351118/1-845 RSVPSPMTFL LLVKGQQADL ARYSVTQVTV EAVAAAGSPP RFPQRLYRGT ENSBTAP00000056230/1-805 KSIPNAKTFL LVVKGEQADN ARYSVTQVTV EARNASGSMP HFTQSLYRGT ENSTTRP00000010573/1-755 KSIPSPKTFL LLVKGEQADH ARYSVTQVTV EAQAASGSPP RFPQSLYRGT bmy_04980T0/1-864 KSIPSPKTFF LLVKGEQADR ASYSVTQVTV EARAASGSPP RFPQSLYRGT BACU003633/1-1003 KSIPSPKTFF LLVKAEQADH ARYSVTQVTV EARAAGGSPP RFPQSLYRGT 401 450 ENSP00000351118/1-845 VARGAGAGVV VKDAAAPSQP LRIQAQDPEF S--------- ---------- ENSBTAP00000056230/1-805 VGLGSGAGVV VKDAADPSQP LRIRAQDPEF P--------- ---------- ENSTTRP00000010573/1-755 VALGSGVGVA IKDAAAPSQA LRIRAQDPEF P--------- ---------- bmy_04980T0/1-864 VALGSGVGVA VRDAAAPSQP LRIRAQDPEF PVGTAWSLGL PGLLL----- BACU003633/1-1003 VALGSGVGVA IRDAAAPSQP LRIRAQDPEF PVGTAWSLGL PGLLPWGLER 451 500 ENSP00000351118/1-845 ---------- -----DLNSA ITYRITNHSH FRMEGEVVLT TTTLAQAGAF ENSBTAP00000056230/1-805 ---------- -----DLNSA ITYRITNNSD FRMDGEAVLT ATSLEHAGVF ENSTTRP00000010573/1-755 ---------- -----DLNSA ITYRVTNNSN FRMDGEAMLT DASLVHAGVF bmy_04980T0/1-864 --------TH WGHVQDLNSA ITYRITNDSN FTMDGEAVLT GASPVQAGVF BACU003633/1-1003 SGEQPGLRTH WGHVQDLNSA ITYRITNNSD FRMDGEAVLT GASLVHAGVF 501 550 ENSP00000351118/1-845 YAEVEAHNTV TSGTATTVIE IQVSEQEPPS TDVPPSPEAG GTTGPWTSTT ENSBTAP00000056230/1-805 YAEVEANNTV TSGTATTVVE IQIQPSPTGP PGPPTSPETA GTTRPSSGTT ENSTTRP00000010573/1-755 YAEVEARNTV TSGTATTVVE VQVSEQEPAP TGPPPSPETA GTTRASSGTT bmy_04980T0/1-864 YAEVEAKNTV TSGTATTVVE VRVSEQEPTP AGEPPRDPGS ARGGLLARGS BACU003633/1-1003 YAEVEANNTV TSGTATTVVE VRVSEQEPTP TGTP------ ---------- 551 600 ENSP00000351118/1-845 SEVPRPPEPS QGPSTTSSGG GTGPHPPSGT TLRPPTSSTP GGPPGAENST ENSBTAP00000056230/1-805 LEVPRPPEPS QGSSTTSSGG DTGLQPSPGT TLTSPASSMP SGPPSV-GTS ENSTTRP00000010573/1-755 SEAPRPPEPS WGSSTTSSGG DSSPRPSSGT TLRPPASSTP GGPPSA-GTS bmy_04980T0/1-864 GEPEPWPWPQ APPRPQRQQE QPEPRAAPRR KPPGPLSPLR GPPRPALGET BACU003633/1-1003 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000351118/1-845 SHQPATPGGD TAQTPKPGTS QPM---PPGV GTSTSHQPAT P--------S ENSBTAP00000056230/1-805 PSPPAASPSG GSATRPSSSP TSEAPQPPEP SQGSSTTSS- ---------G ENSTTRP00000010573/1-755 PSSPSASSGG SAQTSKPGTS LPM---SPGP SRTT------ ---------- bmy_04980T0/1-864 AAHTPPQPHP AEAQHRPRSQ EPLCQRPLGP AAPSHPQVAQ PFTLLTLMLS BACU003633/1-1003 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000351118/1-845 GGTAQTPEPG TSQPMPPSMG TSTSHQPATP G-----GGTA QTPEAGTSQP ENSBTAP00000056230/1-805 GDTGPHPSSG TTLRPPA--- SSTPAPAGPP S-----VGTS PSPTTASPS- ENSTTRP00000010573/1-755 ---------- ---------- ---------- ---------- -PPTGSSP-- bmy_04980T0/1-864 DSGLWAVAVG AIQPTGPVLP SAPCLACWPP ASHLELAGTD PLPAPSSPAY BACU003633/1-1003 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000351118/1-845 MPPGMGTSTS HQPTTPGGG- TAQTPEPGTS QPMPLSKSTP SSGGGPSEDK ENSBTAP00000056230/1-805 -GASAQTSTP TSPASSRNTW TPGTPE---- ----TDGTEG RPVGGQAGDR ENSTTRP00000010573/1-755 ---------- ---------- ---------- ---------- -PAGGSSDAS bmy_04980T0/1-864 WGSLAGVSGA HSCKPHLREW AVALPAGTSG TGGGSTTVDG SPPVSRAEDR BACU003633/1-1003 ---------- ---------W ---------- TGGGSTTVGS RPSGGPAEDR 751 800 ENSP00000351118/1-845 RFSVVDMAAL GGVLGALLLL ALLGLAVLVH KHYGPRLKCC CGKAPEPQPQ ENSBTAP00000056230/1-805 RFSEAEMAVL GGVLGALLLL ALIALAVLVY KNYGHRLTCG SGRALEPQPQ ENSTTRP00000010573/1-755 RFSVVDMAAL GGVLSALLLL ALIALIVLVH KHYGHRLKCC CGKALEPQPQ bmy_04980T0/1-864 HFSVVDMAAL GGTLGALLLL ALIALTVLVH KHYGHRLKCC CGKALE--PQ BACU003633/1-1003 RFSVVEMGAL GGVLGALLLL ALIALTVLVH KHYGHQLKCC CGKALEPQPQ 801 850 ENSP00000351118/1-845 GFDNQAFLPD -HKANWAPVP SPTHDPKPAE A--PMPAEPA PPGPASPGGA ENSBTAP00000056230/1-805 GFDNQAFLND SDDANWAPAP SPSPSHALPA PREPEPPEPA PPSPETPRRL ENSTTRP00000010573/1-755 GFDNQAFLNN PDEASWAPAP SPSSSPVPPA PPEPAPPEPK PPSPETLRRV bmy_04980T0/1-864 GFDNQVFLNN PDEANWAPAP SPSSSPAPPA PPEPAPPEPK PPSPETLRRV BACU003633/1-1003 GFDNQAFLNN PDEANWAPAP SPSSSPAP-- ---PAPPEPK PPSPETLRRV 851 900 ENSP00000351118/1-845 PEPPAAARAG GSPTAVRSIL TKERRPEGGY KAVWFGEDIG TEADVVVLNA ENSBTAP00000056230/1-805 PEAPAKAADG GSPAAVRSIL TKERRPEGGY KAVWFGEDIG AEADVVVLNT ENSTTRP00000010573/1-755 AESPTVALDG DGPAAVRSIL TKERRPEGGY KAVWFGEDIG AEADVVVLNM bmy_04980T0/1-864 PESPAVALDE DGPAAVRSIL TKERRPEGGY KAVWFGEDIG AEADVVVLNT BACU003633/1-1003 PESPAVALDG DGPAAVRSIL TKERRPEGGY KAVWFGEDIG AEADVVVLNT 901 950 ENSP00000351118/1-845 PTLDVDGASD SGS---GDEG EGAGRGG--- ---------- ---------- ENSBTAP00000056230/1-805 PASEAGGAGD SGSEGSGDEA A--------- ---------- ---------- ENSTTRP00000010573/1-755 PASEVDGAGD EGSEGSGDEG AEAGLRG--- ---------- ---------- bmy_04980T0/1-864 PASEVDGAGD EGSEGSGDEG AEAGLRG--- ---------- ---------- BACU003633/1-1003 PASEVDGAGS EGSEGSGDEG AEDGLLGPYL AADAGERLGH GLAGLSPEPC 951 1000 ENSP00000351118/1-845 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056230/1-805 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010573/1-755 ---------- ---------- ---------- ---------- ---------- bmy_04980T0/1-864 ---------- ---------- ---------- ---------- ---------- BACU003633/1-1003 APSPAGDAGD LLLQALQQSC LEEHLLKAAC GVEPIAPEAP DTGPPPASWQ 1001 1050 ENSP00000351118/1-845 ---------- ---------G PYDAPGGD-- ---------- ---------- ENSBTAP00000056230/1-805 ---------- ---------D AQDAPGTY-- ---------- ---------- ENSTTRP00000010573/1-755 ---------- ---------G AQDAPRSD-- ---------- ---------- bmy_04980T0/1-864 ---------- ---------G AQHAPGSD-- ---------- ---------- BACU003633/1-1003 PREAEPCTTA SPSACTLMAG HLHVAGPTCS HLGLHTLPSL GALDLTITYK 1051 1100 ENSP00000351118/1-845 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056230/1-805 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010573/1-755 ---------- ---------- ---------- ---------- ---------- bmy_04980T0/1-864 ---------- ---------- ---------- ---------- ---------- BACU003633/1-1003 GRTVLQEVVG RPSCVLLYGP PGVGGGALEP QRVAFPSPAE LPDQKQLHYT 1101 1150 ENSP00000351118/1-845 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056230/1-805 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010573/1-755 ---------- ---------- ---------- ---------- ---------- bmy_04980T0/1-864 ---------- ---------- ---------- ---------- ---------- BACU003633/1-1003 EKLLQHVAPG LQLELRGLRL WAQRLGKCKV YWEVGGPLGS ASPSTPARLL 1151 1200 ENSP00000351118/1-845 ---------- ---------- --DSYI---- ---------- ---------- ENSBTAP00000056230/1-805 ---------- ---------- --SIHF---- ---------- ---------- ENSTTRP00000010573/1-755 ---------- ---------- --PVYL---- ---------- ---------- bmy_04980T0/1-864 ---------- ---------- --SIYL---- ---------- ---------- BACU003633/1-1003 PRNCDTPIFD FGTFFQXGSP HYTIYLSFGQ DLSVGRPKEK SLVLVKLEPW 1201 1250 ENSP00000351118/1-845 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056230/1-805 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010573/1-755 ---------- ---------- ---------- ---------- ---------- bmy_04980T0/1-864 ---------- ---------- ---------- ---------- ---------- BACU003633/1-1003 LCRAYLEGVQ REGASSLDSG SLSLCLSSSN SLYDDLEHFL EHFLMEVEQP 1251 1300 ENSP00000351118/1-845 - ENSBTAP00000056230/1-805 - ENSTTRP00000010573/1-755 - bmy_04980T0/1-864 - BACU003633/1-1003 G