KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:15 2014 Check: 00 .. Name: ENSTTRP00000002448/1-497 Len: 600 Check: 3572 Weight: 1.00 Name: bmy_15318T0/1-594 Len: 600 Check: 7067 Weight: 1.00 Name: ENSBTAP00000056258/1-498 Len: 600 Check: 1395 Weight: 1.00 Name: BACU011497/1-498 Len: 600 Check: 4535 Weight: 1.00 // 1 50 ENSTTRP00000002448/1-497 ---------- ---------M APRCWRWWPW AAWPRTRPPP SESTQ----- bmy_15318T0/1-594 MRALDGDTAF GNSDEVRDPA NAKALRKKRR RAQMRVKPGK LRFLLDTEVG ENSBTAP00000056258/1-498 ---------- ---------M APRCWRWWPW SSWTRTRLPP SRSIQN---- BACU011497/1-498 ---------- ---------M APRCWRWWPW LAWPRTRPPP SESIQS---- 51 100 ENSTTRP00000002448/1-497 ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXHSRA HVDIYEKQLV bmy_15318T0/1-594 VWGFRQQFST QEQTPQICVV GSGPAGFYTA QHLLKHHSRA HVDIYEKQLV ENSBTAP00000056258/1-498 ---FGQHFST QEQTPQICVV GSGPAGFYTA QHLLKHHSRA HVDIYEKQLV BACU011497/1-498 ---FRQQFST QEQTPQICVV GSGPAGFYTA QHLLKHHSRA HVDIYEKQLV 101 150 ENSTTRP00000002448/1-497 PFGLVRFGVA PDHPEVKNVI NTFTRTAHSD RCAFHGNVVV GRDVTVQELR bmy_15318T0/1-594 PFGLVRFGVA PDHPEVKNVI NSFTRTAHSD RCAFHGNVVV GRDVTVQELR ENSBTAP00000056258/1-498 PFGLVRFGVA PDHPEVKNVI NTFTQTARSD RCAFYGNVEV GRDVTVQELR BACU011497/1-498 PFGLVRFGVA PDHPEVKNVI NTFTRTAHSD RCAFHGNVVV GRDVTVQELR 151 200 ENSTTRP00000002448/1-497 DAYHAVVLSY GAEDHRGLEI PGEELLGVLS ARAFVGWYNG LPENRKLAPD bmy_15318T0/1-594 DAYHAVVLSY GAEDHQALEI PGEELPGVFS ARAFVGWYNG LPENRELAPD ENSBTAP00000056258/1-498 DAYHAVVLSY GAEDHQALDI PGEELPGVFS ARAFVGWYNG LPENRELAPD BACU011497/1-498 DAYHAVVLSY GAEDHQALEI PGEELPGVFS ARAFVGWYNG LPENRELAPD 201 250 ENSTTRP00000002448/1-497 LSCDTAVVLG QGNVALDVAR ILLTPPEYLE VLLLCQKTDI TEAALGALRQ bmy_15318T0/1-594 LSCDTAVVLG QGNVALDVAR ILLTPPEHLE ------KTDI TEAALGALRQ ENSBTAP00000056258/1-498 LSCDTAVILG QGNVALDVAR ILLTPPDHLE VLLLCQKTDI TEAALGALRQ BACU011497/1-498 LSCDTAVVLG QGNVALDVAR ILLTPPEHLE VLLLCQKTDI TEAALGALRQ 251 300 ENSTTRP00000002448/1-497 SQVKTVWIVG RRGPLQVAFT IKELRE---- ---------- ----MIQLPG bmy_15318T0/1-594 SQVKTVWIVG RRGALQVAFT IKVLGPEGEG PGSQVDGLPL GRCGRAELPG ENSBTAP00000056258/1-498 SRVKTVWIVG RRGPLQVAFT IKELRE---- ---------- ----MIQLPG BACU011497/1-498 SQVKTVWIVG RRGALQVAFT IKELRE---- ---------- ----MIQLPG 301 350 ENSTTRP00000002448/1-497 T------RPI LDPADFL--- ---------- --GLQDRIKE ------VPRP bmy_15318T0/1-594 VEEGEPGRPP WGPVPAFWQE LVVSPTWAGF WGGLKSGQRS GPDSSPTPRP ENSBTAP00000056258/1-498 T------RPM LDPADFL--- ---------- --GLQDRIKE ------AARP BACU011497/1-498 T------RPI LDPADFL--- ---------- --GLQDRIKE ------VPRP 351 400 ENSTTRP00000002448/1-497 R--------- ---------- ---------- --KRLVELLL RAATEKPGVA bmy_15318T0/1-594 HLQGASGDDS VTRNSAHFGS CGFLGPSGQN QGKRLMELLL RAATEKPGVA ENSBTAP00000056258/1-498 R--------- ---------- ---------- --KRLMELLL RTATEKPGVE BACU011497/1-498 R--------- ---------- ---------- --KRLMELLL RAATEKPGVA 401 450 ENSTTRP00000002448/1-497 EAARRASASR AWGLRFFRSP QQVLPSPDGR RAAGIRLAVT RLEGVGEATR bmy_15318T0/1-594 EAARWTSASR AWGLRFFRSP QQVLPSPDGR RAAGIRLAVT RLEGVGEATR ENSBTAP00000056258/1-498 EAARRASASR AWGLRFFRSP QQVLPSPDGR RAAGIRLAVT RLEGIGEATR BACU011497/1-498 EAARWASAPR AWGLRFLRSP QQVLPSPDGR RAAGIRLAVT RLEGVGEATR 451 500 ENSTTRP00000002448/1-497 AVPTGAVEDL PCGLVLITIG YKSCPIDPNV PFDPKLGVIP NMEGRVVDVP bmy_15318T0/1-594 AVPTGDVEDL PCGLVLSSIG YKSRPIDPSV PFDPKLGVIP NTEGRVVDVP ENSBTAP00000056258/1-498 AVPTGDVEDL PCGLVLSSIG YKSRPIDPSV PFDPKLGVVP NMEGRVVDVP BACU011497/1-498 AVATGDVEDL PCGLVLSSIG YKSRPIDPSV PFDPKLGVIP NMEGRVVDMP 501 550 ENSTTRP00000002448/1-497 GLYCSGWVKR GPTGVITTTM TDSFVTGQIL LQDLKAGLLP SGPRPGYAAI bmy_15318T0/1-594 GLYCSGWVKR GPTGVITTTM TDSFVTGQIL LQDLKAGLLP SGPRPGYAAV ENSBTAP00000056258/1-498 GLYCSGWVKR GPTGVITTTM TDSFLTGQIL LQDLKAGHLP SGPRPGSAFI BACU011497/1-498 GLYCSGWVKR GPTGVITTTM TDSFVTGQIL LQDLKAGLLP SGPRPGYAAV 551 600 ENSTTRP00000002448/1-497 KALLGRRGVW PVSFSDWEKL DAEEVSRGQG AGKPREKLLD PQEMLRLLGR bmy_15318T0/1-594 KALLSSRGVW PVSFSDWEKL DAEEVSRGQG VGKPREKLLD PQEMLRLLGR ENSBTAP00000056258/1-498 KALLDSRGVW PVSFSDWEKL DAEEVSRGQA SGKPREKLLD PQEMLRLLGH BACU011497/1-498 RALLSSRGVW PVSFSDWEKL DAEEVSRGQG VGKPREKLLD PQEMLRLLGR