KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 18:28:16 2014 Check: 00 ..
Name: BACU012264/1-339 Len: 340 Check: 2662 Weight: 1.00
Name: ENSP00000313324/1-247 Len: 340 Check: 6410 Weight: 1.00
Name: bmy_07620T0/1-246 Len: 340 Check: 4066 Weight: 1.00
Name: ENSBTAP00000056270/1-201 Len: 340 Check: 3762 Weight: 1.00
//
1 50
BACU012264/1-339 MXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000313324/1-247 ---------- ---------- ---------- ---------- ----------
bmy_07620T0/1-246 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000056270/1-201 ---------- ---------- ---------- ---------- ----------
51 100
BACU012264/1-339 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000313324/1-247 ---------- ---------- ---------- ---------M WGPGVTAEGL
bmy_07620T0/1-246 ---------- ---------- ---------- ---------M WGPGVTAEGL
ENSBTAP00000056270/1-201 ---------- ---------- ---------- ---------- ----------
101 150
BACU012264/1-339 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000313324/1-247 SVAPAPPPLL PLLLLLALAL VAPSRGGGGC AELACGERER CCDATNATAV
bmy_07620T0/1-246 SVAPAPPPLL PLLLLLALAL VAPSRGGGGC AELACGERER CCDAANATAV
ENSBTAP00000056270/1-201 ---------- ---------- ---------- ----CGERER CCDAANATAV
151 200
BACU012264/1-339 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000313324/1-247 RCCKLPLHAF LDNVGWFVRK LSGLLILLVL FAIGYFLQRI ICPSPRRYPR
bmy_07620T0/1-246 RCCKLPLHAF LDNVGWFVRK LSGLLILLVL FAIGYFLQRI ICPSPRRYPR
ENSBTAP00000056270/1-201 RCCKLPLHAF LDNVGWFVRK LSGLLILLVL FAIGYFLQRI ICPSPRRYPR
201 250
BACU012264/1-339 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXDSLLD
ENSP00000313324/1-247 GQARPGQRPG PPGGAGPLGG AGPPDD--DD DSPALLRDEA AAGSQDSLLD
bmy_07620T0/1-246 GQA----RPG PPGGAGQPGA PRPPDDNDDD DSPALLRDEA AAGSQDSLLD
ENSBTAP00000056270/1-201 GQA----RPG PPGGAGQPGA AGPPDD-EDD DSPELLRDEV AAGSQDSLLD
251 300
BACU012264/1-339 S-GGGGRGRA GGGRSAPSCA SEHELRVVSP VFLQLPSYEE VKYLPTYEES
ENSP00000313324/1-247 S-GGGGRGRG GGGRSDPSCA SEHEMRVVSP VFLQLPSYEE VKYLPTYEES
bmy_07620T0/1-246 S-GGGGRGRA GGGRSAPSCA SEHELRVVSP VFLQLPSYEE VKYLPTYEES
ENSBTAP00000056270/1-201 SGGGGGRGRA GGGRSAPSCA SEHELRVVSP VFLQLPSYEE VKYLPTYEES
301 350
BACU012264/1-339 MRLQQLSPGE VVLPVSVLGH PRGGGAGESD GGGEVRFPLI
ENSP00000313324/1-247 MRLQQLSPGE VVLPVSVLGR PRGGVAAEPD -GGEGRYPLI
bmy_07620T0/1-246 MRLQQLSPGE VVLPVSVLGR PRGGGAGESD GGGEGRFPLI
ENSBTAP00000056270/1-201 MRLQQLSPGE VVLPVSVLGR PRGGGAGESD GGGEGRFPLI