KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:17 2014 Check: 00 .. Name: bmy_00838T0/1-835 Len: 961 Check: 2817 Weight: 1.00 Name: ENSP00000360120/1-937 Len: 961 Check: 2863 Weight: 1.00 Name: ENSBTAP00000056273/1-791 Len: 961 Check: 1292 Weight: 1.00 Name: BACU000195/1-335 Len: 961 Check: 5537 Weight: 1.00 Name: ENSTTRP00000013429/1-937 Len: 961 Check: 2674 Weight: 1.00 // 1 50 bmy_00838T0/1-835 ---------- ---------- ---------- ---------- ---------- ENSP00000360120/1-937 MHRPRRRGTR PPLLALLAAL LLAARGAAAQ ETELSVSAEL VPTSSWNISS ENSBTAP00000056273/1-791 ---------- ---------- ---------- ---------- ---------- BACU000195/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013429/1-937 MHRPRRRGAR PLLLALLAAL LLAARGAAAQ ETELSVTADL VPTSSWNISS 51 100 bmy_00838T0/1-835 ---------- MDGTEEKAQS LG-------- ---------- ---------- ENSP00000360120/1-937 ELNKDSYLTL DEPMNNITTS LGQTAELHCK VSGNPPPTIR WFKNDAPVVQ ENSBTAP00000056273/1-791 ---------- ---------- ---------- ----PPP--- ---------- BACU000195/1-335 ---------- ---MNNITTS LGQTAELHCK VSGNPPPTIR WFKNDAPVVQ ENSTTRP00000013429/1-937 ELDRESYLAL DEPMNNITTS LGQTAELHCK VSGNPPPTIR WFKNDAPVVQ 101 150 bmy_00838T0/1-835 ---------- -YCARLRP-- ---------- ---------- -----LVTVW ENSP00000360120/1-937 EPRRLSFRST IYGSRLRIRN LDTTDTGYFQ CVATNGKEVV SSTGVLFVKF ENSBTAP00000056273/1-791 ---------- --AAKIKV-- ---------- ---------- ---------- BACU000195/1-335 EPRRISFRAT NYGSRLRIRN LDTTDTGYFQ CVATNGKKVV STTGVLFVKF ENSTTRP00000013429/1-937 EPRRISFRAT NYGSRLRIRN LDTTDTGYFQ CVATNGKKVV STTGVLFVKF 151 200 bmy_00838T0/1-835 GIAQSEPTAS VDEYEEDGFC QPYRGIACAR FIGNRTVYME SLHMQGEIEN ENSP00000360120/1-937 GPPPTASPGY SDEYEEDGFC QPYRGIACAR FIGNRTVYME SLHMQGEIEN ENSBTAP00000056273/1-791 -----FSPTF KDEYEEDGFC QPYRGIACAR FIGNRTVYME SLHMQGEIEN BACU000195/1-335 GPPPTASPGS SDEYEEDGFC QPYRGIACAR FIGNRTVYME SLHMQGEIEN ENSTTRP00000013429/1-937 GPPPTASPGS SDEYEEDGFC QPYRGIACAR FIGNRTVYME SLHMQGEIEN 201 250 bmy_00838T0/1-835 QITAAFTMIG TSSHLSDKCS QFAIPSLCHY AFPYCDETSS VPKPRDLCRD ENSP00000360120/1-937 QITAAFTMIG TSSHLSDKCS QFAIPSLCHY AFPYCDETSS VPKPRDLCRD ENSBTAP00000056273/1-791 QITAAFTMIG TSSHLSDKCS QFAIPSLCHY AFPYCDETSS VPKPRDLCRD BACU000195/1-335 QITAAFTMIG TSSHLSDKCS QFAIPSLCHY AFPYCDETSS VPKPRDLCRD ENSTTRP00000013429/1-937 QITAAFTMIG TSSHLSDKCS QFAIPSLCHY AFPYCDETSS VPKPRDLCRD 251 300 bmy_00838T0/1-835 ECEILENVLC QTEYIFARSN PMILMRLKLP NCEDLPQPES PEAANCIRIG ENSP00000360120/1-937 ECEILENVLC QTEYIFARSN PMILMRLKLP NCEDLPQPES PEAANCIRIG ENSBTAP00000056273/1-791 ECEILENVLC QTEYIFARSN PMILMRLKLP NCEDLPQPES PEAANCIRIG BACU000195/1-335 ECEILENVLC QTEYIFARSN PMILMRLKLP NCEDLPQPES PEAANCIRIG ENSTTRP00000013429/1-937 ECEILENVLC QTEYIFARSN PMILMRLKLP NCEDLPQPES PEAANCIRIG 301 350 bmy_00838T0/1-835 IPMADPINKN HKCYNSTGVD YRGTVSVTKS GRQCQPWNSQ YPHTHTFTAL ENSP00000360120/1-937 IPMADPINKN HKCYNSTGVD YRGTVSVTKS GRQCQPWNSQ YPHTHTFTAL ENSBTAP00000056273/1-791 IPMADPINKN HKCYNSTGVD YRGTVSVTKS GRQCQPWNSQ YPHTHTFTAL BACU000195/1-335 IPMADPINKN HKCYNSTGVD YRGTVSVTKS GRQCQPWNSQ YPHTHTFTAL ENSTTRP00000013429/1-937 IPMADPINKN HKCYNSTGVD YRGTVSVTKS GRQCQPWNSQ YPHTHTFTAL 351 400 bmy_00838T0/1-835 RFPELNGGHS YCRNPGNQKE APWCFTLDEN YKSDLCDIPA CENVWKNRPE ENSP00000360120/1-937 RFPELNGGHS YCRNPGNQKE APWCFTLDEN FKSDLCDIPA C--------- ENSBTAP00000056273/1-791 RFPELNGGHS YCRNPGNQKE APWCFTLDEN YKFDLCDIPA C--------- BACU000195/1-335 RFPELNGGHS YCRNPGNQKE APWCFTLDEN YKSDLCDIPA C--------- ENSTTRP00000013429/1-937 RFPELNGGHS YCRNPGNQKE APWCFTLDEN YKSDLCDIPA C--------- 401 450 bmy_00838T0/1-835 EDHDVLDHDS VLPMKDSKDS KEKNKMEILY ILVPSVAIPL AIALLFFFIC ENSP00000360120/1-937 ---------- -----DSKDS KEKNKMEILY ILVPSVAIPL AIALLFFFIC ENSBTAP00000056273/1-791 ---------- -----DSKDS KEKNKMEILY ILVPSVAIPL AIALLFFFIC BACU000195/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013429/1-937 ---------- -----DSKDS KEKNKMEILY ILVPSVAIPL AIALLFFFIC 451 500 bmy_00838T0/1-835 VCRNNQKSSS PPVQRQPKHV RGQNVEMSML NAYKPKSKAK ELPLSAVRFM ENSP00000360120/1-937 VCRNNQKSSS APVQRQPKHV RGQNVEMSML NAYKPKSKAK ELPLSAVRFM ENSBTAP00000056273/1-791 VCRNNQKSSS PPVQRQPKHV RGQNVEMSML NAYKPKSKAK ELPLSAVRFM BACU000195/1-335 ---------- ---------- -GK------- --YRP----- ---------- ENSTTRP00000013429/1-937 VCRNNQKSSS PPVQRQPKHV RGQNVEMSML NAYKPKSKAK ELPLSAVRFM 501 550 bmy_00838T0/1-835 EELGECAFGK IYKGHLYLPG MDHAQLVAIK TLKEYNNPQQ WTEFQQEASL ENSP00000360120/1-937 EELGECAFGK IYKGHLYLPG MDHAQLVAIK TLKDYNNPQQ WTEFQQEASL ENSBTAP00000056273/1-791 EELGECAFGK IYKGHLYLPG MDHAQLVAIK TLKDYNNPQQ WTEFQQEASL BACU000195/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013429/1-937 EELGECAFGK IYKGHLYLPG MDHAQLVAIK TLKDYNNPQQ WTEFQQEASL 551 600 bmy_00838T0/1-835 MAELHHPNIV CLLGAVTQEQ PVCMLFEYMN QGDLHEFLIM RSPHSDVGCS ENSP00000360120/1-937 MAELHHPNIV CLLGAVTQEQ PVCMLFEYIN QGDLHEFLIM RSPHSDVGCS ENSBTAP00000056273/1-791 MAELHHPNIV CLLGAVTQEQ PVCMLFEYMN QGDLHEFLIM RSPHSDVGCS BACU000195/1-335 ---------- CL-------- ---------- ---------- ---------- ENSTTRP00000013429/1-937 MAELHHPNIV CLLGAVTQEQ PVCMLFEYMN QGDLHEFLIM RSPHSDVGCS 601 650 bmy_00838T0/1-835 SDEDGTVKSS LDHGDFLHIA IQIAAGMEYL SSHFFVHKDL AARNILIGEQ ENSP00000360120/1-937 SDEDGTVKSS LDHGDFLHIA IQIAAGMEYL SSHFFVHKDL AARNILIGEQ ENSBTAP00000056273/1-791 SDEDGTVKSS LDHGDFLHIA IQIAAGMEYL SSHFFVHKDL AARNILIGEQ BACU000195/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013429/1-937 SDEDGTVKSS LDHGDFLHIA IQIAAGMEYL SSHFFVHKDL AARNILIGEQ 651 700 bmy_00838T0/1-835 LHVKISDLGL SREIYSADYY RVQSKSLLPI RWMPPEAIMY GKFSSDSDIW ENSP00000360120/1-937 LHVKISDLGL SREIYSADYY RVQSKSLLPI RWMPPEAIMY GKFSSDSDIW ENSBTAP00000056273/1-791 LHVKISDLGL SREIYSADYY RVQSKSLLPI RWMPPEAIMY GKFSSDSDIW BACU000195/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013429/1-937 LHVKISDLGL SREIYSADYY RVQSKSLLPI RWMPPEAIMY GKFSSDSDIW 701 750 bmy_00838T0/1-835 SFGVVLWEIF SFGLQPYYGF SNQEVIEMVR KRQLLPCSED CPPRMYNLMT ENSP00000360120/1-937 SFGVVLWEIF SFGLQPYYGF SNQEVIEMVR KRQLLPCSED CPPRMYSLMT ENSBTAP00000056273/1-791 SFGVVLWEIF SFGLQPYYGF SNQEVIEMVR KRQLLPCSED CPPRMYSLMT BACU000195/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013429/1-937 SFGVVLWEIF SFGLQPYYGF SNQEVIEMVR KRQLLPCSED CPPRMYSLMT 751 800 bmy_00838T0/1-835 ECWNEIPSRR PRFKDIHVRL RSWEGLSSHT SSTTPSGGNA TTQTTSLSAS ENSP00000360120/1-937 ECWNEIPSRR PRFKDIHVRL RSWEGLSSHT SSTTPSGGNA TTQTTSLSAS ENSBTAP00000056273/1-791 ECWNEIPSRR PRFKDIHVRL RSWEGLSSHT SSTTPSGGNA TTQTTSLSAS BACU000195/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013429/1-937 ECWNEIPSRR PRFKDIHVRL RSWEGLSSHT SSTTPSGGNA TTQTTSLSAS 801 850 bmy_00838T0/1-835 PVSNLSNPRY PNYMFPSQGI TPQGQIAGFI SPPIPQNQRF IPINGYPIPP ENSP00000360120/1-937 PVSNLSNPRY PNYMFPSQGI TPQGQIAGFI GPPIPQNQRF IPINGYPIPP ENSBTAP00000056273/1-791 PVSNLSNPRY PNYMFPSQGI TPQGQIAGFI SPPIPQNQRF IPINGYPIPP BACU000195/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013429/1-937 PVSNLSNPRY PNYMFPSQGI TPQGQIAGFI SPPIPQNQRF IPINGYPIPP 851 900 bmy_00838T0/1-835 GYAAFPAAHY QPAGPPRVIQ HCPPPKSRSP SSASGSTSTG HVTSLPSSGS ENSP00000360120/1-937 GYAAFPAAHY QPTGPPRVIQ HCPPPKSRSP SSASGSTSTG HVTSLPSSGS ENSBTAP00000056273/1-791 GYAAFPAAHY QPAGPPRVIQ HCPPPKSRSP SSASGSTSTG HVTSLPSSGS BACU000195/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013429/1-937 GYAAFPAAHY QPAGPPRVIQ HCPPPKSRSP SSASGSTSTG HVTSLPSSGS 901 950 bmy_00838T0/1-835 NQEANIPLLP HMSIPNHPGG MGITVFGNKS QKPYKIDSKQ PSLLGDSNIH ENSP00000360120/1-937 NQEANIPLLP HMSIPNHPGG MGITVFGNKS QKPYKIDSKQ ASLLGDANIH ENSBTAP00000056273/1-791 NQEANIPLLP HMSIPNHPSG MGITVFGNKS QKPYKIDSKQ PSLLGDPNIH BACU000195/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013429/1-937 NQEANIPLLP HMSIPNHPGG MGITVFGNKS QKPYKIDSKQ PSLLGDSNIH 951 1000 bmy_00838T0/1-835 GHTESMISAE L ENSP00000360120/1-937 GHTESMISAE L ENSBTAP00000056273/1-791 GHTESMISAE L BACU000195/1-335 ---------- - ENSTTRP00000013429/1-937 GHTESMISAE L