KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:18 2014 Check: 00 .. Name: ENSP00000297440/1-855 Len: 909 Check: 1198 Weight: 1.00 Name: ENSTTRP00000010853/1-680 Len: 909 Check: 7779 Weight: 1.00 Name: ENSBTAP00000056286/1-843 Len: 909 Check: 3124 Weight: 1.00 Name: bmy_08935T0/1-708 Len: 909 Check: 6838 Weight: 1.00 Name: BACU005476/1-695 Len: 909 Check: 8611 Weight: 1.00 // 1 50 ENSP00000297440/1-855 MAALGVAEAV AAPHPAEGAE TAEAVELSRA LSRLLPGLEA DSKPGRRRAL ENSTTRP00000010853/1-680 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056286/1-843 ---------- ----PTEAGE TTEAAELNRS LSRLLPGLEA DSTLGRRRAL bmy_08935T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU005476/1-695 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000297440/1-855 EALRRALE-- -----EPGPA ADPTAFQGPW ARLLLPRLLR CLSDPAEGCR ENSTTRP00000010853/1-680 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056286/1-843 EALHRLLEAA QPDAPDADPV AAAAAFQGPW VHLLLPRLLR RLTDPAEGCR bmy_08935T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU005476/1-695 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000297440/1-855 ALAVHLLDLG LRRAARPRDA LPRLLPALAA RLAGPVPARR PPEACEELRL ENSTTRP00000010853/1-680 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056286/1-843 ALAVHLLGLV LRRAARPRDA LLCLLPALAR AVGQP----R AREACEELRL bmy_08935T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU005476/1-695 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000297440/1-855 ALVQLLGLAV DLCGAALAPH LDDALRALRC SLLDPFAAVR RESCSCAAAL ENSTTRP00000010853/1-680 ---------- ------LAPH LDDAVRVLRC TLLDP-AAVR RESCECAADL ENSBTAP00000056286/1-843 ALVQLLGL-V RLTGAAFAPH LDDAVRALRC TLLDPFAAVR RESCECAAGL bmy_08935T0/1-708 ----LLHLAV RLSGAALAPH LDDAVRVLRC TLLDPFAAVR RESCECAAGL BACU005476/1-695 ---------- ------LAPH LDDAVRVLRC TLLDPFAAVR RESCECAAGL 201 250 ENSP00000297440/1-855 AQATPDHFHM QSESLIGPLM QTISHQHWKV RVAAIEATGA VIHFGNGKSV ENSTTRP00000010853/1-680 ARATPDHFHM QSESLIGPLM QSISHQHWKV RVAVIEATGT VIQFGSGKSV ENSBTAP00000056286/1-843 ARATPDHFHM QSESLIGPLM QSISHQHWKV RVAVIEATGA AIQFGSGKSV bmy_08935T0/1-708 ARATPDHFHM QSESLIGPLM QSISHQHWKV RVAVIEATGA VIQFGSGKSV BACU005476/1-695 ARATPDHFHM QSESLIGPLM QSISHQHWKV RVAVIEATGT VIQFGSGKSV 251 300 ENSP00000297440/1-855 DDVLSHFAQR LFDDVPQVRR AVASVVGGWL LCLRDRYSFF HKLIPLLLSS ENSTTRP00000010853/1-680 DDVLPHFAQR LFDDVPQVRQ AVARVVGGWL LHLRDRYSFL HRLIPLLLSS ENSBTAP00000056286/1-843 DDVLPHFAQR LFDDVPQVRQ AVMRVVGGWL LSLRDRYSFF HKLIPLLLSG bmy_08935T0/1-708 DDVLPHFAQR LFDDVPQVRQ AVTRVAGAWL LSLRDRYSFF HKLIPLLLSS BACU005476/1-695 DDVLPHFAQR LFDDVPQVRQ AVTRVAGAWL LSLRDRCSFF HKLLPLLLSS 301 350 ENSP00000297440/1-855 LNDEVPEVRQ LAASLWEDVG LQWQKENEED LKDKLDFAPP TPPHYPPHER ENSTTRP00000010853/1-680 LDDEIPEIAC EAAGLWEQVG LRWQMENEED LKDKLDFAGP PPAHHPSPGS ENSBTAP00000056286/1-843 FHDEIPEIAS EASSLWERVG LQWQTENEED LKDKLDFASP PPAHHPSPGS bmy_08935T0/1-708 LDDEIPEIAC GAAGLWEQVG LRWQMENEED LKDKLDFAGP PPTHHPSPGS BACU005476/1-695 LDDEIPEIAC GAAGLWEQVG LRWQMENEEE LKDKLDFAGP PPAHHPSPGS 351 400 ENSP00000297440/1-855 RPVLGCRELV FRNLSKILPA LCHDITDWVV GTRVKSAQLL PVLLLHAEDH ENSTTRP00000010853/1-680 RPGLGCRELV FRNLSKILPA ICHDITDWVV ATRVKSAQLL AVLLLHAEGH ENSBTAP00000056286/1-843 RPGLGCRELV FRNLSKILPA VCHDIDDWVA GTRVKSAQLL AVLLLHAEDH bmy_08935T0/1-708 RPGLGCRELV FRNLSKILPA ICHDITDWVV GTRVKSAQLL AVLLLHAEAH BACU005476/1-695 RPGLGCRELV VRNLSKILPA ICHDITDWVV GTRVKSAQLL AVLLLHAEAH 401 450 ENSP00000297440/1-855 ATQHLEVVLR TLFQACTDEE AAVVQSCTRS AELVGTFVSP EVFLKLILST ENSTTRP00000010853/1-680 ITQHLEPVLR TLLHACADEE KAVVRSCTRS AELIGTFVSP EVFLKLILSM ENSBTAP00000056286/1-843 VTQHLEPVLR ALLRACADEE AAVVSSCTRS AELVGTFVSP EVFLKLILST bmy_08935T0/1-708 ITQHLEPVLR TLLRACADEE TAVVRSCARS AELIGTFVSP EVFLKLILSS BACU005476/1-695 ITQHLEPVLR TLLRACADEE TAVVRSCARS AELIGTFVSP EVFLKLILST 451 500 ENSP00000297440/1-855 LKKTPSASGL LVLASAMRGC PREALQPHLA AIATELAQAH ICQASENDLY ENSTTRP00000010853/1-680 LRKSPSPSGL LVFASVIRGC PREALRPHVK VIAMELAHAH ICQGSENRLY ENSBTAP00000056286/1-843 LRKSPSPSGL LVLASLIQGC PREALRPHVK VIATELAQAH ICQGSENRLY bmy_08935T0/1-708 LRKSPSPSGL LVLASVIRGC PREALRPHVK VIAVELAHAH ICQGSENRLY BACU005476/1-695 LRKSPSPSGL LVLASVIRGC PREALQPHVK VIAVELAHAH ICQGSEKRTW 501 550 ENSP00000297440/1-855 ---------- ---------L ERLLLCVQAL VSVCHEDCGV ASLQLLDVLL ENSTTRP00000010853/1-680 ---------- ---------G ERLLQCVQAV VSVSREDCRG AGVPLMEVLV ENSBTAP00000056286/1-843 ---------- ---------G ERLLQCVQAV VSAGREDCRG AGEPLLEVLV bmy_08935T0/1-708 ---------- ---------G ERLLQCVRAV VSVSREDCRG AGVPLVEVLV BACU005476/1-695 ESTRPVCWSM SDTVSPRPCG ERLLQCVQAV VSVSREDCRG AGVPLVEVLV 551 600 ENSP00000297440/1-855 TIVALAGATG LRDKAQETMD SLAMVEGVSS CQDLYRKHIG PLLERVTASH ENSTTRP00000010853/1-680 TVLALWGPAG LGAKVQEALA ELAAVESVDG SQDLFRAHVG ALLERLAASH ENSBTAP00000056286/1-843 TVLALWGPAG LSDKVQETLA ALAAVEGMDG SQDLFRARVS PLLEWLAASH bmy_08935T0/1-708 TVLALWGPAG LGAKVQETLA ELAAVEGMDG SQDLFRVHVG ALLERLAASH BACU005476/1-695 TVLALWGPAG LGAK------ ---------- ---------- ---------- 601 650 ENSP00000297440/1-855 LDWTAHSPEL LQFSVIVAQS GPALGEALPH VVPTLRACLQ PSQDPQMRLK ENSTTRP00000010853/1-680 RDWTGRSTGF LQFDVVLAHS GPALGEALPQ LVPILRSCLQ PARDPPMRLK ENSBTAP00000056286/1-843 RDWTGHSVEL LQLDVVLSHS GPALGEALPQ LVPILRSCLQ PARDPAMRLK bmy_08935T0/1-708 QDWSSHSKEL LQFDVVLTHS GPALGEALPQ LVPILRSCLQ PARDPPMRLK BACU005476/1-695 ---------- --FDVVLTHS GPALGEALPQ LVPILRSCLQ PARDPPMRLK 651 700 ENSP00000297440/1-855 LFSILSTVLL RATDTINSQG QFPSYLETVT KDILAPNLQW HAGRTAAAIR ENSTTRP00000010853/1-680 LFSTLSGLLL GARETVDSQG QFHGYLDTLI KDIFVPNLQC HAGRTAAAIR ENSBTAP00000056286/1-843 LFSTLTGVLL GAPETVDSQG QLHGYLDTLV QDIFVPNLQW HAGRTAAAIR bmy_08935T0/1-708 LFSTLTGLLL GARETVDSQG QFHGYLDTLI KDIFVPNLQW HAGRTAAAIR BACU005476/1-695 LFSTQTGLLL GARETVDSQG QFHGYLDTLI KDIFVPNLQW HAGRTAAAIR 701 750 ENSP00000297440/1-855 TAAVSCLWAL TSSEVLSAEQ IRDVQETLMP QVLTTLEEDS KMTRLISCRI ENSTTRP00000010853/1-680 TAAVS----- ---------- IQEVQEMLMP QILTTLEEDS QMTRLISCRI ENSBTAP00000056286/1-843 TAAVSCLWAL VSSGGLSDGQ IQDMQETLMP QILTTLEEDS QMTRLISCQI bmy_08935T0/1-708 TAAVSCLWAL VSSGVLSDEQ IREVQEMLMP QILTTLEEDS QMTRLISCRI BACU005476/1-695 TAAVSCLWAL VSSGVLSDEQ IQEVQEMLMP QILTTLEEDS QMTRLISCRI 751 800 ENSP00000297440/1-855 INTFLKTSGG MTDPEKLIRI YP-------- ---------- ---------- ENSTTRP00000010853/1-680 INVFLKTSDG VIDADKFIKI YP-------- ---------- ---------- ENSBTAP00000056286/1-843 INLFLKTSNG VIDPDKFIKI YP-------- ---------- ---------- bmy_08935T0/1-708 INVFLKTSDG VIDPDKFIKI YP-------- ---------- ---------- BACU005476/1-695 INVFLKTSDG VIDPDKFIKI YPVVSSVGKI ENATLTSGQV GAMSLNVDVT 801 850 ENSP00000297440/1-855 ELLKRLDDVS NDVRMAAAST LVTWLQCVKG ANAKSYYQSS VQYLYRELLV ENSTTRP00000010853/1-680 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000056286/1-843 ELLKRLDDVS DDVRLAATSA LVTWLQRVQS EASKCCYQSS VRHLYRELLV bmy_08935T0/1-708 ELLKRLDDVS NEVRLAATST LVTWLERVRS EAGRCYYQSS IQHLYRELLV BACU005476/1-695 ELLKRLDDVS NEVRLAATST LVTWLERVRN EAGKCYYQSN IQHLYRELLV 851 900 ENSP00000297440/1-855 HLDDPERAIQ DAILEVLKEG SGLFPDLLVR ETEAVIHKHR SATYCEQLLQ ENSTTRP00000010853/1-680 XXXXXXXXXX XXXXXALKAG SVLFPDLLVR EMEAVLHKHR SPTHCEQLLQ ENSBTAP00000056286/1-843 YLDDPEHAVQ DAVLEALKAG SVLFPDLLVK ETEAVLHKHR SPTYCEQLLQ bmy_08935T0/1-708 YLDDPESAVQ DAVLEALKAG SVLFPDLLVR EMEAVLHKHR SPTHCEQLLQ BACU005476/1-695 YLDDPESAIQ DAVLEALKAG SVLFPDLLVR EMEAILHKHR SPTHCEQLLQ 901 950 ENSP00000297440/1-855 HVQAVPATQ ENSTTRP00000010853/1-680 HLQALPPAP ENSBTAP00000056286/1-843 HLQALPPAQ bmy_08935T0/1-708 HLQALPPAP BACU005476/1-695 HLQALPPAP