KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:19 2014 Check: 00 .. Name: ENSP00000354874/1-570 Len: 706 Check: 5703 Weight: 1.00 Name: ENSBTAP00000056296/1-554 Len: 706 Check: 4561 Weight: 1.00 Name: bmy_03545T0/1-682 Len: 706 Check: 1258 Weight: 1.00 Name: ENSTTRP00000016287/1-545 Len: 706 Check: 315 Weight: 1.00 // 1 50 ENSP00000354874/1-570 ---------- -MVKTNKPGA KVAVSAQRGS EVTTNTSPQQ GHGYVLASSH ENSBTAP00000056296/1-554 ---------- -VVKTNKTGS RVAVSTQKGA EV-TSMTPQR GQGYLISSSQ bmy_03545T0/1-682 MGSTHRGTIY HMVKTNKVGS KVAVSAQKGA EV-TNTTPQR GHAYDLASSQ ENSTTRP00000016287/1-545 ---------- -MVKTNKGGS KVAVSAQKGA EV-TNTTPQR GHEYDLASSQ 51 100 ENSP00000354874/1-570 RSAAVSLNPS -HRRSEAAHP TTPHSASDYP RSVSLQSGPG HYAVPTPRGP ENSBTAP00000056296/1-554 RSGPASTIPI GHRRSEAGHA TALHLSSDYL RSSSPQSGPG PSGAPNPR-T bmy_03545T0/1-682 RSGTASMIXS AHRRSEAGHS TIPHLASEYP RSSSPHSGPG VSGAPSCR-T ENSTTRP00000016287/1-545 RRGTASMIPS AHRRSEAGHS TIPHLASEYP GSITPHSGPG LSGAPSCR-T 101 150 ENSP00000354874/1-570 ETGPRTESSR HSSPHLKSQK TQTLASHASS RQWKVSPPRE EAARRGSESK ENSBTAP00000056296/1-554 ETRSRTDTSR QASPSRKLTQ GESMLYTGQV QQ-NVSPSRE EATRRGVEIR bmy_03545T0/1-682 ETRSKSEAYR HA-------- -------VQM QR-NVSTSRE EATRRGGESK ENSTTRP00000016287/1-545 EIRSKSEAYR HA-------- -------VQI QQ-NVSTSRE QAARRWGESK 151 200 ENSP00000354874/1-570 SGREVGHHAS SIPDAKSTHQ LSFQDQKNNL QSQILEDDPP SKVQNPQGVR ENSBTAP00000056296/1-554 PGRDISNRFS LIPEAKSSRR LSFVDQKDDF --TLLEDEPP SKVQYPQGVR bmy_03545T0/1-682 PGRDINNRYS LIPDAKSSRR LSFVDQKDNF --TILEEDPP SKVQYPQGVR ENSTTRP00000016287/1-545 PGRDINNRYS LIPEAKSSRR LSFVNQKDN- ---QLEEDPP SKVQYPQGVR 201 250 ENSP00000354874/1-570 VPRRILSYPK DEAVQTEPIQ RITTTSEIRS PRSPSLLEHG SSCVSADYQT ENSBTAP00000056296/1-554 VPRRPLICPK DEAVQTEPIR KNMTAGDIRL PRRPPSPERG GNRIYPDSRS bmy_03545T0/1-682 VPHRPLVYPK DEAVQTEPTR KSLTAADIRS PRRPSSPERS DSRICTDSRP ENSTTRP00000016287/1-545 VPHRSLGYPK DEAVQTEPTR KSLTAANIRS PRRPSSPERS GSRICTVSRP 251 300 ENSP00000354874/1-570 AQRRVPVEES ETGPYGPIPS KPKALYRNMN LDSLLKLSVL KDSDGVHRVS ENSBTAP00000056296/1-554 TQRRIPGPES DTGRQNSIYA EPKALRRSVN LESSLTLSVL KDLNSGHKAS bmy_03545T0/1-682 TQRRIPGQES EMGCQNSIYT EPKALHRSMN LESSLRLSFL KDLDGGHKVS ENSTTRP00000016287/1-545 TQRRTPGQES EMGCQNSIYT DPKALHTSMN LESSLRLSFL KDLDGGRKVS 301 350 ENSP00000354874/1-570 ARVDPESLHK YSAYPETKPS AKVLVSSQVE SNVRTPIRGN SEVGRRVTIS ENSBTAP00000056296/1-554 MRPEPEPGHR PSVYNEIKFS PKVLIPSEVE PSTKPSARGE SEGGRRVTIS bmy_03545T0/1-682 MRPEPESICK HSVYTETKSF PKVLISSEVE PNVKSSIRGD SEGGRRVTIS ENSTTRP00000016287/1-545 MLPEPESIRK HSVYTETKSF PKVLISSEVE PNVKSSIRGD SEGGHKVTIS 351 400 ENSP00000354874/1-570 PGVQSVEPTH HVTVPSVSEG SHKSSMFVTP EPIYKQQTQK PPEITYMSQG ENSBTAP00000056296/1-554 PGAQS---AS RRTSRAASES PRKSSVLATP EPEYKQYIAK PSDSIYEFPR bmy_03545T0/1-682 PGGQS---AS RVTSRAVSES PRKSSTFVSP EPIYKQHTTR PSKSTYVSSG ENSTTRP00000016287/1-545 PGGQS---AS RVTSRAMSES PCKSSTFVTP EPIYKQHTTR PSKSNYVSSG 401 450 ENSP00000354874/1-570 PTPRYPELSQ -KPSIHAELE LTPRPLPPRS LPRYGPDSSW WPLLNPEVET ENSBTAP00000056296/1-554 PTLRPPEPSS RKHSVRVELE LTPRPLPPRC LPRYGPDSTW WALLSPDGEM bmy_03545T0/1-682 PTLRHPEPSG -KPSVHAELE LTPRPLPPRS LPRYGPDSSW WALLNPEVEM ENSTTRP00000016287/1-545 PTLRHPEPSG -KPSVHAELE LTPRPLPPRS LPRYGPDSSW WALLNPEVEM 451 500 ENSP00000354874/1-570 PQSQLTTPDF EPKCSPSLDL LLSGFKIDSS PFCEDLKFQR EKASLSPPSP ENSBTAP00000056296/1-554 PNSRPTTPDI EPKSPPPPDP SLPFFEMETS PFCEDLMFQR EKASPSPLSS bmy_03545T0/1-682 PQSRPITLDS EPKCPSPIDP SMPFFEMESS PFCEDLMFQR RKASPSPPPP ENSTTRP00000016287/1-545 PQSQPITLDS EPKSPSPVDP SMSFFEMESS PFCEDLMSPR GKPSPSPPPS 501 550 ENSP00000354874/1-570 PKEFPSWAPL SEVPQTPKHT CKQPIQRFTA FFLDVSEEMY NRVIWWLKGL ENSBTAP00000056296/1-554 PKESPSPSPL REVLQAPKHT SRHPTQRFSV FFMDVSEEMY NRVFWWLKGL bmy_03545T0/1-682 PKESPSPEPR REVPQVPKHT SKQPIQRFSA FFLDVSEEMY NRVIWWLKGL ENSTTRP00000016287/1-545 PKESPSPEPL REVSQVRKHT SKQPIQRFSA FFLDVSEEMY NRVI-WLKGL 551 600 ENSP00000354874/1-570 CFSLLWAHCG SLGDGRTGE- ---------- ---------- ---------- ENSBTAP00000056296/1-554 CFPSRGSSLG GWGAGGQVG- ---------- ---------- ---------- bmy_03545T0/1-682 CFSLLWVHSG GLGGRRTVGR VASLSSLFSS RAAPQKLGRE DSQAAGPAGL ENSTTRP00000016287/1-545 CFSLLWVHSG GLGGRRTVG- ---------- ---------- ---------- 601 650 ENSP00000354874/1-570 ------EWH- ---------- -------LCI YRAGSFRR-- ---------- ENSBTAP00000056296/1-554 ------GWP- ---------- -------L-- ---------- ---------- bmy_03545T0/1-682 LWISGSGWHG GGPGTLLTGC ARARPSSDCS LGCMAHRQSQ DEDSVVLVSK ENSTTRP00000016287/1-545 ------GW-- ---------- -------LCI RRARSVRRP- ---------- 651 700 ENSP00000354874/1-570 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056296/1-554 ---------- ---------- ---------- ---------- ---------- bmy_03545T0/1-682 ASGSSHLGMV DCGVWSRFHS RQEFSGGPAT APGSWMAACL SLSFTSPSGS ENSTTRP00000016287/1-545 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000354874/1-570 ------ ENSBTAP00000056296/1-554 ------ bmy_03545T0/1-682 TAGDRA ENSTTRP00000016287/1-545 ------