KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:20 2014 Check: 00 .. Name: ENSTTRP00000001965/1-371 Len: 551 Check: 4357 Weight: 1.00 Name: ENSP00000386935/1-507 Len: 551 Check: 2208 Weight: 1.00 Name: ENSBTAP00000056310/1-510 Len: 551 Check: 7800 Weight: 1.00 Name: bmy_14837T0/1-397 Len: 551 Check: 65 Weight: 1.00 Name: BACU009832/1-414 Len: 551 Check: 7379 Weight: 1.00 // 1 50 ENSTTRP00000001965/1-371 ---------- ---------- ---------- ---------- ---------- ENSP00000386935/1-507 ------MASE QDVRARLQRA GQEHLLRFWA ELAPEPRAAL LAELALLEPE ENSBTAP00000056310/1-510 AAGGGNMASE ADLRARLQRA SQEHLLRFCA ELAPEPRAAL LAQLEALEPE bmy_14837T0/1-397 ---------- ---------- ---------- ---------- ---------- BACU009832/1-414 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001965/1-371 ---------- ----RRPDRC P--------- ---------- ---------- ENSP00000386935/1-507 ALREHCRRAA EACARPHGPP PDLAARLRPL PPERVGRASR SDPETRRRWE ENSBTAP00000056310/1-510 ALRQHCQRAA AACARRPGPP PDLAARLQPL PLERVGSASE GDPQTRRLWE bmy_14837T0/1-397 ---------- ----RPPAPA PDLAARLRPL PPERVGSASG VSPQTRRLWE BACU009832/1-414 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000001965/1-371 ---------- ---------- ---------- ---------- -------KAA ENSP00000386935/1-507 EEGFRQISLN KVAVLLLAGG QGTRLGVTYP KGMYRVGLPS RKTLYQLQAE ENSBTAP00000056310/1-510 EEGFHQIALN KVAVLLLAGG QGTRLGVTYP KGMYQVGLPS QKTLYQLQAE bmy_14837T0/1-397 EEGFHQIALN KVAVLLLAGG QGTRLGVTYP KGMYQVGLPS QKTLYQLQAE BACU009832/1-414 ---------- ---------- ---------- --MYQVGLPS QKTLYQLQAE 151 200 ENSTTRP00000001965/1-371 PCQRLPEGPG PPKAGSACLP CRYIMTSEFT LGPTAKFFKE HDFFHLDPNN ENSP00000386935/1-507 RIRRVEQLAG -ERHGTRCTV PWYVMTSEFT LGPTAEFFRE HNFFHLDPAN ENSBTAP00000056310/1-510 RIRRVEQLAG -ERYGTRCTV PWYIMTSEFT LEPTAKFFKE HDFFHLDPNN bmy_14837T0/1-397 RIRRVEQLAG -ERYGTRCTV PWYIMTSEFT LGPTAKFFKE HDFFHLDPNN BACU009832/1-414 RIRRVEQLAG -ERYGTRCTV PWYIMTSEFT LGPTAKFFKE HDFFHLDPNN 201 250 ENSTTRP00000001965/1-371 VVMFEQRMLP AVTFDGRAIL EQKDKVAMAP DGNGGLYCAL ADHQVLEDME ENSP00000386935/1-507 VVMFEQRLLP AVTFDGKVIL ERKDKVAMAP DGNGGLYCAL EDHKILEDME ENSBTAP00000056310/1-510 VIMFEQRMLP AVSFDGRAIL ERKDKVAMAP DGNGGLYSAL EDHQILEDME bmy_14837T0/1-397 VVMFEQRMLP AVTFDGRAIL ERKDKVAMAP DGNGGLYCAL ADHQVLEDME BACU009832/1-414 VVMFEQRMLP AVTFDGRAIL ERKDKVAMAP DGNGGLYCAL ADHQVLEDME 251 300 ENSTTRP00000001965/1-371 RRGVEFVHVY CVDNILVRLA DPVFIGFCVL RGADCGAKVV EKASPEEPVG ENSP00000386935/1-507 RRGVEFVHVY CVDNILVRLA DPVFIGFCVL QGADCGAKVV EKAYPEEPVG ENSBTAP00000056310/1-510 RRGVEFVHVY CVDNILVRLA DPLFIGFCVL RGADCGAKVV EKAYPEEPVG bmy_14837T0/1-397 RRGVEFVHVY CVDNILVRLA DPVFIGFCVL RGADCGAKVV EKASPEEPVG BACU009832/1-414 RRGVEFVHVY CVDNILVRLA DPVFIGFCVL RGADCGAKVV EKASPEEPVG 301 350 ENSTTRP00000001965/1-371 VVCQVDGVPQ VVEYSEISPE TARLRAPGGG LLYNAGNICN HFFTRDFLQM ENSP00000386935/1-507 VVCQVDGVPQ VVEYSEISPE TAQLRASDGS LLYNAGNICN HFFTRGFLKA ENSBTAP00000056310/1-510 VVCQVDGVPQ VVEYSEISPE VAQLRAPGGG LLYNAGNICN HFFTRDFLRT bmy_14837T0/1-397 VVCQVDGVPQ VVEYSEISPE TARLRAPGGG LLYNAGNICN HFFTREFLQM BACU009832/1-414 VVCQVDGVPQ VVEYSEISPQ TARLRAPGGG LLYNAGNICN HFFTRDFLQM 351 400 ENSTTRP00000001965/1-371 ATREFEPLLK PHVAVKKVPY VDDQGNPVKP LEPNGIKMEK FVFDVLPFAK ENSP00000386935/1-507 VTREFEPLLK PHVAVKKVPY VDEEGNLVKP LKPNGIKMEK FVFDVFRFAK ENSBTAP00000056310/1-510 VTRELEPLLQ PHVAVKKVPC VDEHGNPVKP LQPNGIKMEK FVFDVLPFAK bmy_14837T0/1-397 VTREFEPLLK PHVAVKKVPY VDEEGNPVKP LEPNGIKMEK FVFDVLPFAK BACU009832/1-414 VTREFEPLLK PHVAVKKVPY VDEEGNPVKP LEPNGIKMEK FVFDVLPFAK 401 450 ENSTTRP00000001965/1-371 NFVAFQVLRG EEFSPLKNAX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000386935/1-507 NFAALEVLRE EEFSPLKNAE PADRDSPRTA RQALLTQHYR WALRAGARFL ENSBTAP00000056310/1-510 NFMAFQVLRE EEFSPLKNAD SADRDNPSTS RRALLAQHCR WALRAGARFL bmy_14837T0/1-397 NFVAFQVLRG EEFSPLKNAD SAERDNPSTA RRALLAQHHR WALQAGAHFL BACU009832/1-414 NFVAFQVLRG EEFSPLKNAD SAE----STA RRSLLAQHHQ WALQAGAHFL 451 500 ENSTTRP00000001965/1-371 XXXXXXXXXX XX------PP GSGEP----- ---PAICEIS PLVSYSGEGL ENSP00000386935/1-507 DAHGAWLPEL PS------LP PNGDP----- ---PAICEIS PLVSYSGEGL ENSBTAP00000056310/1-510 DVHGAQLPEQ LS------LP GSAEP----- ---PAICEIS PLVSYAGEGL bmy_14837T0/1-397 DAHGARLPEQ PR-------- ---------- ---------- ---------- BACU009832/1-414 DAHGARLPEQ PRDWRCTCKA GSSSPRSSWT WTWPGHCRPD SLLDLPAPGS 501 550 ENSTTRP00000001965/1-371 EVYLR----- ---GREFGSP LILDVDTART LQA------- ---------- ENSP00000386935/1-507 EVYLQ----- ---GREFQSP LILDEDQARE PQLQES---- ---------- ENSBTAP00000056310/1-510 EKYLR----- ---GREFRPP LILDEAMARE LRP------- ---------- bmy_14837T0/1-397 ---------- ---------- ---------- ---------- ---------- BACU009832/1-414 PRLRTQPRPG LQGGKQAALS FWLQNMDHRS KHAGSLHEGG NCPATRSPGP 551 600 ENSTTRP00000001965/1-371 - ENSP00000386935/1-507 - ENSBTAP00000056310/1-510 - bmy_14837T0/1-397 - BACU009832/1-414 K