KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:23 2014 Check: 00 .. Name: ENSP00000442699/1-755 Len: 780 Check: 8955 Weight: 1.00 Name: ENSBTAP00000056344/1-756 Len: 780 Check: 8933 Weight: 1.00 Name: ENSTTRP00000002125/1-587 Len: 780 Check: 8977 Weight: 1.00 Name: bmy_09193T0/1-765 Len: 780 Check: 5636 Weight: 1.00 Name: BACU005419/1-765 Len: 780 Check: 6109 Weight: 1.00 // 1 50 ENSP00000442699/1-755 MSGTNLDGND EFDEQLRMQE LYGDGKDGDT QTDAGGEPDS LGQQPTDTPY ENSBTAP00000056344/1-756 MSGNNLDVND KFDEQLRVQE WYRDTKDNGT EKDPGAETDS FRQQPTDTPY ENSTTRP00000002125/1-587 ---------- -----LRMQK LYGGFEDGDT EKDPGGENDS FQQQPTDTPY bmy_09193T0/1-765 MSGNNLDEND EFDEQLRMQE LYGGTEDGDT EKDPGGENDS FRQQSTDTPY BACU005419/1-765 MSCNNLDEND EFDEQLRMQE LYGGTEDGDT EKDPGGENDS FQQQSTDTPY 51 100 ENSP00000442699/1-755 EWDLDKKAWF PKITEDFIAT YQANYGFSND GASSSTANVE DVHARTAEEP ENSBTAP00000056344/1-756 EWDLDKKAWF PKITEDFIAT YQANYGFSND GASNSTASVQ DVSARTAEEP ENSTTRP00000002125/1-587 EWDLDKKAWF PKITEDFIAT YQANYGFSND GASSSTANVQ DVSARTAEEP bmy_09193T0/1-765 EWDLDKKAWF PKITEDFIAT YQANYGFPND GASSSTANVQ DVSARTAEDP BACU005419/1-765 EWDLDKKAWF PKITEDFIAT YQANYGFPND GASSSTANVQ DVSARTAEEP 101 150 ENSP00000442699/1-755 PQEKAPEPTD ARKKGEKRKA ESGWFHVEED RNTNVYVSGL PPDITVDEFI ENSBTAP00000056344/1-756 PQRQPPDPSD LKKKGEKRKT ESGWFHVEDD RNTNVYVSGL PPDITVDEFI ENSTTRP00000002125/1-587 PQRKSPEPSD TKKRGEKRKS ESGWFHVEEG RNTNVYVSGL PPDITVDEFI bmy_09193T0/1-765 PQRKSPEPSD TKKRGEKRK- --GWFHVEED RNTNVYVSGL PPDITVDEFI BACU005419/1-765 PQRKSPEPSD TKKRGEKRK- --GWFHVEED RNTNVYVSGL PPDITVDEFI 151 200 ENSP00000442699/1-755 QLMSKFGIIM RDPQTEEFKV KLYKDNQGNL KGDGLCCYLK RESVELALKL ENSBTAP00000056344/1-756 QLMSKFGIIM RDPQTGDFKV KLYKDDQGNL KGDGLCCYLK RESVDLALKL ENSTTRP00000002125/1-587 QLMSKFGIIM RDPQTEEFKV KLYKDNQGNL KGDGLCCYLK RESVDLALKL bmy_09193T0/1-765 QLMSKFGIIM RDPHTEEFKV KLYKDNQGNL KGDGLCCYLK RESVDLALKL BACU005419/1-765 QLMSKFGIIM RDPHTEEFKV KLYKDNQGNL KGDGLCCYLK RESVDLALKL 201 250 ENSP00000442699/1-755 LDEDEIRGYK LHVEVAKFQL KGEYDASKKK KKCKDYKKKL SMQQKQLDWR ENSBTAP00000056344/1-756 LDEGEIRGYR LHVEVAKFQL KGEYDASKKK KKCKDYKKKL SMQQKQLDWR ENSTTRP00000002125/1-587 LDDDEIRGYK LHVEVAKFQL KGEYDASKKK KKCKDYKKKL SMQQKQLDWR bmy_09193T0/1-765 LDDDEIRGYK LHVEVAKFQL KGEYDASKKR KKCKDYKKKL SMQQKQLDWR BACU005419/1-765 LDDDEIRGYK LHVEVAKFQL KGEYDASKKR KKCKDYKKKL SMQQKQLDWR 251 300 ENSP00000442699/1-755 PERRAGPSRM RHERVVIIKN MFHPMDFEDD PLVLNEIRED LRVECSKFGQ ENSBTAP00000056344/1-756 PERQAGSSRM YHERVVIIKN MFHPVDFEDD PLVLNEIRED LRVECSKFGQ ENSTTRP00000002125/1-587 PEKRAGPSRL RHERVVIIRN MFHPIDFEDD PLVLNEIRED LRVECSKFGQ bmy_09193T0/1-765 PERRAGSARM RHERVVIIRN MFHPMDFEDD PLVLNEIRED LRVECSKFGQ BACU005419/1-765 PERRAGPSRM RHERVVIIRN MFHPMDFEDD PLVLNEIRED LRVECSKFGQ 301 350 ENSP00000442699/1-755 IRKLLLFDRH PDGVASVSFR DPEEADYCIQ TLDGRWFGGR QITAQAWDGT ENSBTAP00000056344/1-756 IRKLLLFDRH PDGVASVSFR SPEEADYCIQ TLNGRWFGGR QITAQAWDGT ENSTTRP00000002125/1-587 VRRLLLFDRH PDGVASVSFR DPEEADYCIQ TLNGRWFGGR QITAQVWDGT bmy_09193T0/1-765 VRKLLLFDRH PDGVASVSFR DPEEADYCIQ TLNGRWFGGR QITAQVWDGT BACU005419/1-765 VRKLLLFDRH PDGVASVSFR DPEEADYCIQ TLNGRWFGGR QITAQAWDGT 351 400 ENSP00000442699/1-755 TDYQVEETSR EREERLRGWE AFLNAPEANR GLRRSDSVSA SERAGPSRAR ENSBTAP00000056344/1-756 TDCQVEETTS EREERLRGWE AFLNAPEANR GLQRSDSIRA PERAGSSRVR ENSTTRP00000002125/1-587 TDYQ------ ---------- ---------- ---------- ---------- bmy_09193T0/1-765 TDYQVEETTR EREERLRGWE VFLNTPEANR GLQRSDSVWA PERAGPSRVR BACU005419/1-765 TDYQVEETTR EREERLRGWE VFLNTPEANR GLQRSDSVWA PERAGPSRVR 401 450 ENSP00000442699/1-755 HFSEHPSTSK MNAQETATGM AFEEPIDEKK FEKTEDGGEF EEGASENNAK ENSBTAP00000056344/1-756 HFSEHPGTSQ TNVQAAATEM AFEEPIDEKK FEKMEDGGEV EEAASEKDAK ENSTTRP00000002125/1-587 ----HPCISQ TNVQEAATEM EFEEPIDEKK FEKTEDGGEV EEAASEKDAK bmy_09193T0/1-765 HFSEHPCTSQ TNVQEAATEM AFEEPIDEKK FEKTEDGGEV EEAASEKDAK BACU005419/1-765 HFSEHPCTSQ TNVQEAATEM AFEEPIDEKK FEKTEDGGEV EEAASEKDAK 451 500 ENSP00000442699/1-755 ESSPEKEAEE GCPEKESEEG CPKRGFEGSC ---------- --------SQ ENSBTAP00000056344/1-756 ESGPEKEAEG --SREESEES CLERESKAAC PKK------- -RESGEGSPE ENSTTRP00000002125/1-587 ESGPEKEAEK GCPQKESEES CLKREFEEGC ---------- --------PE bmy_09193T0/1-765 ESGPEKEAEE GCPQKQSEES CLEREFEDGC PKREREEDFP DRESGERSPE BACU005419/1-765 ESGPEKEAEE GCPQKESEES CLEREFEEGC PKREREEDFP DRESGERSPK 501 550 ENSP00000442699/1-755 KESEEGNPVR GSEEDSPKKE SKKKTLKNDC EENGLAKESE DD-LNKESEE ENSBTAP00000056344/1-756 KEHEEGNPNK ESKETVPEKE SKKKKLKTDP DKNGHEKESE EEGPGKESEG ENSTTRP00000002125/1-587 KEHEEGSPKK ESKENGAERE PKKKRLKTDP DENSLEQEPE E--------- bmy_09193T0/1-765 KEHEEGSPKK ESKENGAERE SKKKRLKTDP DENGLEQEPE E--------- BACU005419/1-765 KEHEEGSPKK ESKENGAERE SKKKRLKTDP DENGLEQEPE E--------- 551 600 ENSP00000442699/1-755 EVGPTKESEE DDSEKESDED CSEKQSEDGS EREFEENGLE KDLDEEGSEK ENSBTAP00000056344/1-756 EASPQKVASE DDDSEQESKD CSEKQFENGS EKELEENGLE KGFEEDASDK ENSTTRP00000002125/1-587 EASPQK-AAE DGSSEQGSEE CSEKQFEDDS EKELEENGLE KGFEEEGSEK bmy_09193T0/1-765 EASPQK-AAE DGSSEQGSEE CSEKQFEDDS EKELEENGLE KGFEEEGSEK BACU005419/1-765 EASPQK-AAE DGSSEQGSEE CSEKQFEDDS EKELEENGLE KGFEEEGSEK 601 650 ENSP00000442699/1-755 ELHENVLDKE LEENDSENSE FEDDGSEKVL DEEGSEREFD EDSDEKEEEE ENSBTAP00000056344/1-756 EFNENILEKE LEENESEKSE FEDDSSEKVF DEEGSEKEFD EESDEKEEEE ENSTTRP00000002125/1-587 ELNENILEKE VEENNSEKSE FEDDSSGKMF DEEGSEKEFD EESDEK-EEE bmy_09193T0/1-765 EFNENVLEKE IEENDSEKSE FEDDSSGKMF DEEGSEKEFD EESDEKEEEE BACU005419/1-765 EFNENVLEKE IGENDSEKSE FEDDSSGKMF DEEGSEKEFD EESDEKEEEE 651 700 ENSP00000442699/1-755 DTYEKVFDDE SDEKEDEEYA DEKGLEAADK KAEEGDADEK LFEESDDKED ENSBTAP00000056344/1-756 DAYGKVFDDE SEE-EDEEDA DKKECEDADE KDEE---DEK VFEDSDGKED ENSTTRP00000002125/1-587 DVYEKVFDDE SDEKEDKEVA DEKG--DVVE KDK------- ---------- bmy_09193T0/1-765 DVYEKVFDDE SDEKEDEEDA EEKGLEDADE KDEEDDADEK VFEDSDGKED BACU005419/1-765 DVYEKVFDDE SDEKEDEEDA EEKGLEDADE KDEEDDADEK VFEDSDGKED 701 750 ENSP00000442699/1-755 -EDADGKEVE DADEKLFEDD DSNEKLFDEE EDSSEKLFDD SDERGTLGGF ENSBTAP00000056344/1-756 EEDGDVKEDE DIDEKVFE-D DSSEKFFD-- DDSSDKL--- SDERGTVGGL ENSTTRP00000002125/1-587 ---------- ---------- ---------- ---------- ---------- bmy_09193T0/1-765 EEEVDVKEIE AIDEKMFEDD DSNEKLFD-- DDASDKLFED SDERGTVGDL BACU005419/1-765 EEDVDGKEIE AIDEKMFEDD DSNEKLFD-- DDASDKLFED SDERGTVGDL 751 800 ENSP00000442699/1-755 GSV-EEGPLS TGSSFILSSD DDDDDI---- ENSBTAP00000056344/1-756 GDVKEEGPLS TGSSFVLGSN DDDEND---- ENSTTRP00000002125/1-587 ---------- ---------- ---------- bmy_09193T0/1-765 GNVKEEGPLS TGSSFVLSSD DDDEDDDDDV BACU005419/1-765 GNVKEEGPLS TGSSFVLSSD DDDEDDDDDV