KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:26 2014 Check: 00 .. Name: ENSP00000286067/1-1247 Len: 1484 Check: 7165 Weight: 1.00 Name: ENSBTAP00000056362/1-1247 Len: 1484 Check: 4917 Weight: 1.00 Name: BACU012441/1-1481 Len: 1484 Check: 3160 Weight: 1.00 Name: bmy_11412T0/1-1418 Len: 1484 Check: 2 Weight: 1.00 Name: ENSTTRP00000009340/1-1246 Len: 1484 Check: 6183 Weight: 1.00 // 1 50 ENSP00000286067/1-1247 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056362/1-1247 ---------- ---------- ---------- ---------- ---------- BACU012441/1-1481 MDTSENSAEA IAVDSNNQSK SPLEKFMVKL CTHHQKQFIR VLNDLYTESQ bmy_11412T0/1-1418 ---------- ---------- ------MVKL CTHHQKQFIR VLNDLYTESQ ENSTTRP00000009340/1-1246 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000286067/1-1247 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056362/1-1247 ---------- ---------- ---------- ---------- ---------- BACU012441/1-1481 PGTEDLPPSD SGTMDASTCN AGCAQLGTKH KEKDAMCLNM KSSTSVELFV bmy_11412T0/1-1418 PGTEDLPPSD SGTMDASTCN AGCAQLGTKH KEKDAMCLNM KSSTSVELFV ENSTTRP00000009340/1-1246 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000286067/1-1247 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056362/1-1247 ---------- ---------- ---------- ---------- ---------- BACU012441/1-1481 DSSGSHSPQH LTEQALKEPP PETNSVDGRE NTLTVVQKDS SELPTTKPNS bmy_11412T0/1-1418 DSSGSHSPQH LTEQALKEPP PETNSVDGRE NTLTVVQKDS SELPTTKPNS ENSTTRP00000009340/1-1246 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000286067/1-1247 ---------- ---------- ---------- ---------- --------MQ ENSBTAP00000056362/1-1247 ---------- ---------- ---------- ---------- --------VQ BACU012441/1-1481 MDSSTLGYLT ASNSSSVNFH HISKSLEGQT TGQEQDTDVK ICKDGKDHVQ bmy_11412T0/1-1418 MDSSTLGYLT ASNSSSVNFH HISKSLEGQT TGQEQDTDVK ICKDGKDHVQ ENSTTRP00000009340/1-1246 ---------- ---------- ---------- ---------- --------VQ 201 250 ENSP00000286067/1-1247 SSALVESLIT VKMAAENSEE GNTCIIPQRN LFKALSEEAW NSGFMGNSSR ENSBTAP00000056362/1-1247 SAALVENLIA VKAAAENNEE SNSCIVSQRN SFKALSEEAW DSGFMGNSPR BACU012441/1-1481 SSALVENLIA VKVATENSEE SNSCIVSQRN SFKALSEEAW DSGFMGNSPR bmy_11412T0/1-1418 SSALVENLIA VKVATENSEE SNSCIVSQRN SFKALSEEAW DSGFMGNSPR ENSTTRP00000009340/1-1246 SSALVENLIA VKVATENSEE SNSCIVSQRN SFRALSEEAW DSGFMGNSPR 251 300 ENSP00000286067/1-1247 TADKENTLQC -PKTPLRQDL EANEQDARPK QENHLHSLGR NKVGYHLHPS ENSBTAP00000056362/1-1247 TADKENALQC SSKTPLRQDL EACEQDSRPK QENHLHSLGR NKMGYHLQPS BACU012441/1-1481 TADKENALQC SSKTPLRQDL EASEQDSRPK QENHLHSLGR NKMGYHLQPS bmy_11412T0/1-1418 TADKENALQC SSKTPLRQDL EASEQDSRPK QENHLHSLGR NKMGYHLQPS ENSTTRP00000009340/1-1246 TADKENALQC SSKTPLRQDL EASEQDSRPK QENHLHSLGR NKMGYHLQPS 301 350 ENSP00000286067/1-1247 DKGQFDHSKD GWLGPGPMPA VHKAANGHSR TKMISTSIKT ARKSKRASGL ENSBTAP00000056362/1-1247 DKSQFDHSKD GWLAPSPMPP VHKASNGHSR TKMIPTSIKT ARKSKRASGL BACU012441/1-1481 DKSQFDHSKD GWLAPSPMPP VHKASNGHSR TKMLSTSIKT ARKSKRASGL bmy_11412T0/1-1418 DKSQFDHSKD GWLAPSPMPP VXKASNGHSR TKMLSTSIKT ARKSKRASGL ENSTTRP00000009340/1-1246 DKGQFDHSKD GWLAPSPMPP VHKASNGHSR TRMLSASIKT ARKSKRASGL 351 400 ENSP00000286067/1-1247 RINDYDNQCD VVYISQPITE CHFENQKSIL SSRKTARKST RGYFFNGDCC ENSBTAP00000056362/1-1247 RINDYDNQCD VVYISQPITE CHFENQRSIL SSRKTARKST RGYFFNGDCC BACU012441/1-1481 RINDYDNQCD VVYISQPITE CHFENQRSIL SSRKTARKST RGYFFNGDCC bmy_11412T0/1-1418 RINDYDNQCD VVYISQPITE CHFENQRSIL SSRKTARKST RGYFFNGDCC ENSTTRP00000009340/1-1246 RINDYDNQCD VVYISQPITE CHFENQRSVL SSRKTARKST RGYFFNGDCC 401 450 ENSP00000286067/1-1247 ELPTVRTLAR NLHSQEKASC SALASEAVFT PKQTLTIPAP RHTVDVQLPR ENSBTAP00000056362/1-1247 ELPTVRTLAK NLHSQEKASC STVASEAVVT PKQTLVTSAP QPTVEVEHPR BACU012441/1-1481 ELPTVRTLAR NLHSQEKASC STLASEAVVT PKQTLIISAP QPTIDVQHPR bmy_11412T0/1-1418 ELPTVRTLAR NLHSQEKASC STLASEAVVT PKQTLIISAP QPTIDVQHPR ENSTTRP00000009340/1-1246 ELPTVRTLAR NLHSQEKASC STLASEAVVT PKQTLIISSP QPTVAVQHPR 451 500 ENSP00000286067/1-1247 EDNPEEPSKE ITSHEEGGGD VSPRKEPQEP EVCPTKIKPN LSSSPRSEET ENSBTAP00000056362/1-1247 EDKPEEPSKE TTPLTEGDRD ASPEKESQEP EVCLVTNNAN PSGSPTSKET BACU012441/1-1481 EDNPEEPSKE ITSLKEGDRD ASSEKESQEP EVCPVTNNAN PSSSSRSKET bmy_11412T0/1-1418 EDNPEEPSKE ITSLKEGDRD ASSEKESQEP EVCPVTNNAN PSSSSRSKET ENSTTRP00000009340/1-1246 EDSPEEPSKE ITSLKEGDRD ASSEKESQEP EVFPVTNNTN PSSSSRSKET 501 550 ENSP00000286067/1-1247 TASSLVWPLP AHLPEEDLPE GGSTVSAPTA SGMSSPEHNQ PPVALLDTEE ENSBTAP00000056362/1-1247 AASSPVWPLP AHLPEEDPPE GSSMVSAPTG SEMSSPERDQ QPAEVLSTEE BACU012441/1-1481 AASSPVWSLP AHLPEEDLPE GSSAVSAPTG SGISSPERDQ QPVELLDTKE bmy_11412T0/1-1418 AASSPVWPLP AHLPEEDLPE GSSAVSAPTG SGISSLERDQ QPVELLDTKE ENSTTRP00000009340/1-1246 AASNPVWPLP AHLPEEDLPE GSSAVSAPTG SGISSPERDQ PPVELLDTKE 551 600 ENSP00000286067/1-1247 MSVPQDCHLL PSTESFSGGV SEDVISRPHS PPEIVSREES PQCSENQSSP ENSBTAP00000056362/1-1247 MSVPRDCPLL PSADSISEGG SDDVAPRPVS PPETAEREES PLCSESQSAS BACU012441/1-1481 MSVPQDCPLL PSTESLSEGG SEDVVPRPCS PPETVSREES PLCSENQSPP bmy_11412T0/1-1418 MSVPQDCPLL PSTESLSEGG SEDVVPRPCS PPETVSREES PLCSENQSPP ENSTTRP00000009340/1-1246 MSVPQDCPLL PSTESLSEGG SEDVVPRPCS PPETVSREES PLCSENQSPP 601 650 ENSP00000286067/1-1247 MGLEPPMSLG KAEDNQSISA EVESGDTQEL NVDPLLKESS TFTDENPSET ENSBTAP00000056362/1-1247 AGLDPPMSPG KAEEEPSVAT EAETEDAQEL DTDPLSKESS TLTNENPSEI BACU012441/1-1481 VGLEPPTSLG KAEEDQSIGT EAETEDTQEL DTDPLLKESS TLTNENPSEI bmy_11412T0/1-1418 VGLEPPMSLG KAEEDQSIGT EAETEDTQEL DTDPLLKESS TLTNENPSEI ENSTTRP00000009340/1-1246 VGLEPPTSLG KAEEDQSIGT EAETEDTQEL DTDPLLKESS TLTNENPSEI 651 700 ENSP00000286067/1-1247 EESEAAGGIG KLEGEDGDVK CLSEKDTYDT SIDSLEENLD KKKKGKKFPE ENSBTAP00000056362/1-1247 EESEAAGGTE KLEGEDGDVK HPSEKDACDQ NTESPEENLD KKKKGRKFPE BACU012441/1-1481 EEREAPGGTG KFEGEDGDVK HPPEKDMCGQ NIDSPEENLD KKKKGKKFPE bmy_11412T0/1-1418 EESEAPGGTG KFEGEDGDVK HPTEKDMCGQ NIDSPEENLD KKKKGKKFPE ENSTTRP00000009340/1-1246 EESEAPGGTG KFEGEDGDVK HPTEKEMCDQ NIDSPEENLD KKKKGKKFPE 701 750 ENSP00000286067/1-1247 ASDRCLRSQL SDSSSADRCL RNQSSDSSSA CLEIKVPKNP SAKRSKKEGH ENSBTAP00000056362/1-1247 ASDRCLRSQL ADSSSAERCL KNQSSDSSSP SADVKVSKSS GAKRSKKEGY BACU012441/1-1481 ASDRCLRSQL SDSSSADRCL RNQSSDSSSA CAEIKVSKNP GAKRSKKEGY bmy_11412T0/1-1418 ASDRCLRSQL SDSSSADRCL RNQSSDSSSA CAEIKVSKNP GAKRSKKEGY ENSTTRP00000009340/1-1246 ASDRCLRSQL SDPSSADRCL RNQSSDSSSA CAEIKVSKNP GAKRSKKEGY 751 800 ENSP00000286067/1-1247 PGGTTPKGLL PDSFHTETLE DTEKPSVNER PSEKDAEQEG EGGGIITRQT ENSBTAP00000056362/1-1247 PVGTIPESFP TEGCHTKALE DTENPVVNEK TPEKDAEQEV EVGGVITRQT BACU012441/1-1481 PGGTAPESFL TEGFHTKALE DTENPNVKEN PSEKDAEQEG EGGGMITRQT bmy_11412T0/1-1418 PGGTAPESFL TEGFHTKALE DTENPNVKEN PSEKDAEQEG EGGGMITRQT ENSTTRP00000009340/1-1246 PGGAAPESFL TEGFHTKALE DTENPNVNEN PSGKDAEQEG EGGGMITRQA 801 850 ENSP00000286067/1-1247 LKNMLDKEVK ELRGEIFPSR DPITTAGQPL PGERLEIYVQ SKMDEKNAHI ENSBTAP00000056362/1-1247 LKNMLVKEVK GEEGSIFPSS DPLATVGQTL PGEKLEIYVQ SKLGENSTQE BACU012441/1-1481 FKNMLAKEVK GEEEGIFPSS DPLATVGQPL PGEKLEIYVQ SKLGENSTQD bmy_11412T0/1-1418 FKNMLAKEVK GEEEGIFPSS DPLATVGQPL PGEKLEIYVQ SKLGGNSTQD ENSTTRP00000009340/1-1246 FKNMLAKEVK GEEEGVFPSS DPLATVGQPL PGEKLEIYVQ SKLGENSTQD 851 900 ENSP00000286067/1-1247 PSESIACKRD PEQAKEEPGH IPTQHVEEAV NEVDNENTQQ KDDES-DAPC ENSBTAP00000056362/1-1247 PSESIPCTF- PEQSQGKPGP VPAKETEEAV NETDSADSQH KDGDSDDVPS BACU012441/1-1481 PSESIPCTF- PEQSKEKPGP IPAQETEEVV NNIDSADSPH KDDDS-DVLS bmy_11412T0/1-1418 PSESIPCTF- PEQSKEKPGP IPAQEMEEVV NDIDSADSPH KEDDS-DVLS ENSTTRP00000009340/1-1246 PSESIPCTF- PEQSKEKPGP IPAQETEEVV NDIDSADSPR KDDDS-DVLS 901 950 ENSP00000286067/1-1247 SSLGLSSSGS GDAARAPKSV PRPKRLTSST YNLRHAHSLG SLDASKVTSE ENSBTAP00000056362/1-1247 STLGSSSSGN DDTAVPPKWA PRLTRLTSST YNLRHTHSLD SLDTIKVTSE BACU012441/1-1481 STVGLSSSRS DDAAGPPKWV PRLTRLTSST YNLRHAHALD SLDTMKVTSE bmy_11412T0/1-1418 STVGLSSSRS DDAAGPPKWV PRLTRLTSST YNLRHAHALD SLDTMKVTSE ENSTTRP00000009340/1-1246 STVGLSSSRS DDAAGPPKWV PRLTRLTSST YNLRHAHSLD SLDTIKVTSE 951 1000 ENSP00000286067/1-1247 KEAAQVNPIM PKENGASESG DPLDEDDVDT VVDEQPKFME WCAEEENQEL ENSBTAP00000056362/1-1247 KEAAQGSPI- PKENAASESG DPIDEGDVDT VMDEQPKFVE WCAEEENQEL BACU012441/1-1481 KEAAQGNTI- PKENETSESG DPVDEDEVDT MVDDQPKFVE WCAEEENQEL bmy_11412T0/1-1418 KEAAQGNTI- PKENETSESG DPVDEDDVDT MVDDQPKFVE WCAEEENQEL ENSTTRP00000009340/1-1246 KEAAQGNTM- PKENEASESG DPLDEDDVDT VADDQPKFVE WCAEEENQEL 1001 1050 ENSP00000286067/1-1247 IANFNAQYMK VQKGWIQLEK EGQPTPRARN KSDKLKEIWK SKKRSRKCRS ENSBTAP00000056362/1-1247 IANFNAQYMK VQKGWIQLEK EAQPTPRARN KSDKLKEIWK SKKRSRKCRG BACU012441/1-1481 IANFNAQYMK VQKGWIQLEK EAQPTPRARN KSDKLKEIWK SKKRSRKCRG bmy_11412T0/1-1418 IANFNAQYMK VQKGWIQLEK EAQPTPRARN KSDKLKEIWK SKKRSRKCRG ENSTTRP00000009340/1-1246 IANFNAQYMK VQKGWIQLEK EAQPTPRARN KSDKLKEIWK SKKRSRKCRG 1051 1100 ENSP00000286067/1-1247 SLESQKCSPV QMLFMTNFKL SNVCKWFLET TETRSLVIVK KLNTRLPGDV ENSBTAP00000056362/1-1247 SLEVQKFSPV QMLFMTNFKL SNVCKWFLET TETRSLVIVK KVNTRLPGDI BACU012441/1-1481 SLEVQKFSPV QMLFMTNFKL SNVCKWFLET TETRSLVIVK KLNTRLPGDI bmy_11412T0/1-1418 SLEVQKFSPV QMLFMTNFKL SNVCKWFLET TETRSLVIVK KLNTRLPGDI ENSTTRP00000009340/1-1246 SLEVQKFSPV QMLFMTNFKL SNVCKWFLET TETRSLVIVK KLNTRLPGDI 1101 1150 ENSP00000286067/1-1247 PPVKHPLQKY APSSLYPSSL QAERLKKHLK KFPGATPAKN NWKMQKLWAK ENSBTAP00000056362/1-1247 PPVKHPLQKY PPSSLYPSSL QAERLKKHLK KFPGATPAKN NWKTQKLWAK BACU012441/1-1481 PPVKHPLQKY SPSSLYPSSL QAERLKKHLK KFPGATPARN NWKTQKLWAK bmy_11412T0/1-1418 PPVKHPLQKY SPSSLYPSSV QAERLKKHLK KFPGATPARN NWKTQKLWAK ENSTTRP00000009340/1-1246 PPVKHPLQKY SPSSLYPSSL QAERLKKHLK KFPGATPARN NWKTQKLWAK 1151 1200 ENSP00000286067/1-1247 FRENPDQVEP EDGSDVSPGP NSEDSIEEVK EDRNSHPPAN LPTPASTRIL ENSBTAP00000056362/1-1247 FRENPDQVEP EDGSDVSLSS SPEESVEEAK EGRSSHPPTS SPTPASTRIL BACU012441/1-1481 FREDPDQVAP EDDSDVSLSP NPEDSIEEVK DGRNSHPPTN SPTPASTRIL bmy_11412T0/1-1418 FREDPDQVDP EDDSDVSLSP NPEDXIEEVK EGRNSHPPTN SPTPASTRIL ENSTTRP00000009340/1-1246 FREDPDQVEP EDDSDVSLSP NPEDSIEEVK EGRNSHPPTN SPTPASTRIL 1201 1250 ENSP00000286067/1-1247 RKYSNIRGKL RAQQRLIKNE KMECPDALAV ESKPSRKSVC INPLMSPKLA ENSBTAP00000056362/1-1247 RKYSNIRGKL RAQQRLIRNE KLESPVGPAV ESKQSCKSVC INPLMSPKLA BACU012441/1-1481 RKYSNIRGKL RAQQRLIKNE KAESPFDPAV ESKQSCKSVC INPLMSPKLA bmy_11412T0/1-1418 RKYSNIRGKL RAQQRLIKNE KVESPFGPAV ESKQSCKSVC INPLMSPKLA ENSTTRP00000009340/1-1246 RKYSNIRGKL RAQQRLIKNE KAESPFGPAV ESKQSCKSVC INPLMSPKLA 1251 1300 ENSP00000286067/1-1247 LQVDADGFPV KPKSTEGMKG RKGKQVSEIL PKAEVQSKRK RTEGSSPPDS ENSBTAP00000056362/1-1247 LQVGADGFPI KPKSPDATKA RKGKQVPEVL PKAEVQNKRR RTEGGSTQDR BACU012441/1-1481 LQVGADGFPV KPKSTDGMKG RKGKQMSEIS PKAEVQNKRK RTEGGSTQDR bmy_11412T0/1-1418 LQVGADGFPV KPKSTDGMKG RKGKQMSEIS PKAEVQNKRK RTEGGSTQDR ENSTTRP00000009340/1-1246 LQVGADGFPV KPKSTDGMKG RKGKQTSEIS PKAEVQNKRK RTEGGSTQDR 1301 1350 ENSP00000286067/1-1247 KNKGPTVKAS KEKHADGATK TPAAKRPAAR DRSSQPPKKT SLKENKVKIP ENSBTAP00000056362/1-1247 KDKGPAVRAS RERHVDGSTR ISAAKKPAAR DRSSQLPKKT SSKENKVKIP BACU012441/1-1481 KDKGAAMKAS KEKHVDGSTR APAAKKPAAR DRISQLPKKT TLKERKVKIP bmy_11412T0/1-1418 KDKGAVMKAS KEKHVDGSTR APAAKKPAAR DRISQLPKKT TLKEKKVKIP ENSTTRP00000009340/1-1246 KDKGAAMKAS KEKHVDGSTR TPAAKKPAAR DRVSQLPKKT TLKEKKGKIP 1351 1400 ENSP00000286067/1-1247 KKSAGKSCPP SRKEKENTNK RPSQSIASET LTKPAKQKGA GESS----SR ENSBTAP00000056362/1-1247 KKSPGKSCPP SRKEKENANK RPTQPSASDP VTKSAKQKGA GESS----SR BACU012441/1-1481 KKSPGKSCPP SRKEKENTNK RPTQPSPSEM VTKPAKQKGA AVVTVWLATR bmy_11412T0/1-1418 KKSPGKSCPP SRKEKENTNK RPTQPSPSEM VTKPAKQKGA GESS----SR ENSTTRP00000009340/1-1246 KKSPGKSCPP SRKEKENTNK RPTQPSPSEM VTKPAKQKGA GESS----SR 1401 1450 ENSP00000286067/1-1247 PQKATNRKQS SGKTRARPS- ---TKTPESS AAQRKRKL-- ---------- ENSBTAP00000056362/1-1247 PQKATNRKQS SGKTRARPS- ---TKTPENS AAQRKRKR-- ---------- BACU012441/1-1481 CKGSLSHLLD SKCERNSPPG PVLSEVTVGA DVDDQRTLVF PLSFWRSWKT bmy_11412T0/1-1418 PQKATNRKQS SGKTRARPS- ---TKTPENS AAQRKRKL-- ---------- ENSTTRP00000009340/1-1246 PQKATNRKQS SGKTRARPS- ---TKTPENS AAQRKRKL-- ---------- 1451 1500 ENSP00000286067/1-1247 --KAKLDCSH SKRRRLDAK- ---------- ---- ENSBTAP00000056362/1-1247 --KAKLDSSH SKRRRLDAK- ---------- ---- BACU012441/1-1481 PGKQSLKLYH SSPESEEVLP DIAPQARGTV SAGQ bmy_11412T0/1-1418 --KAKLDSSH SKRRRMDTK- ---------- ---- ENSTTRP00000009340/1-1246 --KAKLDSSH SKRRRMDTK- ---------- ----