KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:28 2014 Check: 00 .. Name: bmy_02009T0/1-253 Len: 625 Check: 6217 Weight: 1.00 Name: BACU003232/1-569 Len: 625 Check: 5611 Weight: 1.00 Name: ENSP00000363257/1-388 Len: 625 Check: 6664 Weight: 1.00 Name: ENSTTRP00000015807/1-260 Len: 625 Check: 8066 Weight: 1.00 Name: ENSBTAP00000056378/1-381 Len: 625 Check: 3611 Weight: 1.00 // 1 50 bmy_02009T0/1-253 ---------- ---------- ---------- ---------- ---------- BACU003232/1-569 ---------- ---------- ---------- ---------- ---------- ENSP00000363257/1-388 MKDCEYQQIS PGAAPLPASP GARRPGPAAS PTPGPGPAPP AAPAPPRWSS ENSTTRP00000015807/1-260 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056378/1-381 SDCKRAESVL ERASAAASSC NSDRTGPGWG PGPAAGRDPA AA--RPQRHP 51 100 bmy_02009T0/1-253 ---------- ----NSFPKA SLVPARQHWL ---------- ---------- BACU003232/1-569 ----SGSGSG SIGRRPRRKW EGFPGRNRFY CGGRLMLSGH GGVFALTLLL ENSP00000363257/1-388 SGSGSGSGSG SLGRRPRRKW EVFPGRNRFY CGGRLMLAGH GGVFALTLLL ENSTTRP00000015807/1-260 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056378/1-381 EPGRRGRGSG SLGRRPRRKW EVFPGRNRFY CGGRLMLAGH GGVFALTLLL 101 150 bmy_02009T0/1-253 ---------- ---PPVLRLL ALGLAI---- ---------- ----PHLSLL BACU003232/1-569 ILTTTVLFFV FDCPFLARQL TLAIPIIAAI LFFFVMSCLL QTSFTDPGIL ENSP00000363257/1-388 ILTTTGLFFV FDCPYLARKL TLAIPIIAAI LFFFVMSCLL QTSFTDPGIL ENSTTRP00000015807/1-260 ---------- --CPFLARQL TLAIPIIAAI LFFFVMSCLL QTSFTDPGIL ENSBTAP00000056378/1-381 ILTTTVLFFV FDCPFLARHL TLAIPIIAAI LFFFVMSCLL QTSFTDPGIL 151 200 bmy_02009T0/1-253 PVS------- -----DNTGS STYRPPPRTR EVMINGQVVK LKYCFTCKMF BACU003232/1-569 PRATVCEAAA LEKQIDNTGS STYRPPPRTR EVMINGQVVK LKYCFTCKMF ENSP00000363257/1-388 PRATVCEAAA LEKQIDNTGS STYRPPPRTR EVLINGQMVK LKYCFTCKMF ENSTTRP00000015807/1-260 PRATVCEAAA LEKQIDNTGS STYRPPPRTR EVMINGQVVK LKYCFTCKMF ENSBTAP00000056378/1-381 PRATVCEAAA LEKQIDNTGS STYRPPPRTR EVMINGQVVK LKYCFTCKMF 201 250 bmy_02009T0/1-253 RPPRTSHCSV CDNCVERFDH HCPWVGNCVG KRNYRFFYAF ILSLSFLTAF BACU003232/1-569 RPPRTSHCSV CDNCVERFDH HCPWVGNCVG KRNYRFFYAF ILSLSFLTAF ENSP00000363257/1-388 RPPRTSHCSV CDNCVERFDH HCPWVGNCVG RRNYRFFYAF ILSLSFLTAF ENSTTRP00000015807/1-260 RPPRTSHCSV CDNCVERFDH HCPWVGNCVG KRNYRFFYAF ILSLSFLTAF ENSBTAP00000056378/1-381 RPPRTSHCSV CDNCVERFDH HCPWVGNCVG KRNYRFFYAF ILSLSFLTAF 251 300 bmy_02009T0/1-253 IFACVVTHLT LR-------- ---------- ---------- ---------- BACU003232/1-569 IFACVVTHLT LRSQGSNFLS TLKETPARYP FFQAQGGSRP QCPCASLTAL ENSP00000363257/1-388 IFACVVTHLT LRAQGSNFLS TLKETPA--- ---------- ---------- ENSTTRP00000015807/1-260 IFACVVTHLT LRSQGSNFLS TLKETPA--- ---------- ---------- ENSBTAP00000056378/1-381 IFACVVTHLT LRSQGSNFLS TLKETPA--- ---------- ---------- 301 350 bmy_02009T0/1-253 ---------- ---------- -FHTYLVASN LTTNEDIKGS WSNKRGGEAS BACU003232/1-569 LTVLELVICF FSIWSILGLS GFHTYLVASN LTTNEDIKGS WSNKRGGEAS ENSP00000363257/1-388 -SVLELVICF FSIWSILGLS GFHTYLVASN LTTNEDIKGS WSSKRGGEAS ENSTTRP00000015807/1-260 -SVLELVICF FSIWSILGLS GFHTYLVASN LTTNEDIKGS WSNKRSGEAS ENSBTAP00000056378/1-381 -SVLELVICF FSIWSILGLS GFHTYLVASN LTTNEDIKGS WSNKRGGEAS 351 400 bmy_02009T0/1-253 VNPYSHKSVI TNCCAVLCGP LPPSLIDRRG FVQSDTVLPS PIRSDEPA-- BACU003232/1-569 VNPYSHKSVI TNCCAVLCGP LPPRAMERAS LIQKSKLAEQ AERYEDMAAF ENSP00000363257/1-388 VNPYSHKSII TNCCAVLCGP LPPSLIDRRG FVQSDTVLPS PIRSDEPA-- ENSTTRP00000015807/1-260 VNPYSHKSVI TNCCAVLCGP LPPR------ ---------- PIRSDEPA-- ENSBTAP00000056378/1-381 VNPYSHKSVI TNCCAVLCGP LPPSLIDRRG FVQSDTVLPS PVRSDEPA-- 401 450 bmy_02009T0/1-253 ---------- --CRAK---- ---------- ---------- ---------- BACU003232/1-569 MKRAVEKGEE LSCEERNLLS VAYKNVVGGQ RAAWRVLSSI EQKSNEEGSE ENSP00000363257/1-388 ---------- --CRAK---- ---------- ---------- ---------- ENSTTRP00000015807/1-260 ---------- --CRAK---- ---------- ---------- ---------- ENSBTAP00000056378/1-381 ---------- --CRAK---- ---------- ---------- ---------- 451 500 bmy_02009T0/1-253 ---------- ---------- ---------- ---------- ---------- BACU003232/1-569 EKGPEVREYR EKVETELRGV CDTVLGLLNT HLIKEAGDAE SRVFYLKMKG ENSP00000363257/1-388 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015807/1-260 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056378/1-381 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_02009T0/1-253 ---------- ---------- ---------- ---------- ---------- BACU003232/1-569 DYYRYLAEVA TGDDKKRIID SARSAYQQAM DISKKEMPPT NPIRLGLALN ENSP00000363257/1-388 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015807/1-260 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000056378/1-381 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_02009T0/1-253 ---------- ---------- ---------- --------PD ASMCVRGLKD BACU003232/1-569 FSVFHYEIAN SPEEAISLAK TTFDEAMADL HTLSEDSYKD STLIMQLLRD ENSP00000363257/1-388 ---------- ---------- ---------- --------PD ASMV------ ENSTTRP00000015807/1-260 ---------- ---------- ---------- --------PD ASMV------ ENSBTAP00000056378/1-381 ---------- ---------- ---------- --------PD ASM------- 601 650 bmy_02009T0/1-253 LLRTAALCLS RSGLGGARRP APPPA BACU003232/1-569 NL--TLWTAD NAGEEGCEAP EEPQS ENSP00000363257/1-388 ---------- ----GGHP-- ----- ENSTTRP00000015807/1-260 ---------- ----GGHP-- ----- ENSBTAP00000056378/1-381 ---------- ---------- -----