KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:29 2014 Check: 00 .. Name: bmy_09440T0/1-222 Len: 477 Check: 8514 Weight: 1.00 Name: ENSP00000356236/1-419 Len: 477 Check: 374 Weight: 1.00 Name: ENSBTAP00000056405/1-417 Len: 477 Check: 5413 Weight: 1.00 Name: ENSTTRP00000010658/1-417 Len: 477 Check: 5778 Weight: 1.00 Name: BACU009785/1-473 Len: 477 Check: 9556 Weight: 1.00 // 1 50 bmy_09440T0/1-222 -RSPGLQGRA ALRPP----- -------AVH GPPSSGRPVT PRRPSPLSYS ENSP00000356236/1-419 MRNIFKRNQE PIVAP--ATT TATMPIGPVD NSTESGGAGE SQEDMFAKLK ENSBTAP00000056405/1-417 MRSIFKRNQE PVVAP----A TTTMPAGPVD NSTESGGAGE GKEDMFAMFK ENSTTRP00000010658/1-417 MRNIFKRNQE PMVAPTTTTT TTTMPAEPLD NSTKSGGARE GKGDLFATLK BACU009785/1-473 MRNIFKRNQE PMVAP----A TTTMPAGPVD NSTESGGARE GKGYGFATVK 51 100 bmy_09440T0/1-222 DSLGREVETD RLPVW----- ---------- ---------- ---------- ENSP00000356236/1-419 EKLFNEINKI PLPPWALIAI AVVAGLLLLT CCFCICKKCC CKKKKNKKEK ENSBTAP00000056405/1-417 ERFFNEIVKL PLPPWALIAI AVVTGLLLLT CCFCICKKCC CKKKKNKKEK ENSTTRP00000010658/1-417 DQFFNEMVKL PLPPWALGAI AVLLGLLLLA CCFCICKTCC ---KKNKKEK BACU009785/1-473 DRFFNEMVKF PLPRWALVAI AVLLGLLLLT CCFCICKKCC CKKKKNKKEK 101 150 bmy_09440T0/1-222 ---------- --------HP PAPSGLT--- ------RRP- ---------- ENSP00000356236/1-419 GKGMKNAMNM KDMKGGQDDD DAETGLTEGE GEGEEEKEPE NLGKLQFSLD ENSBTAP00000056405/1-417 GKGAKNAMNM KDMRGGQDDD DAETGLTEGE GEGEEEKEPE NLGKLQFSLD ENSTTRP00000010658/1-417 GKGAKNAMNM KDMKGGQDDD DAETGLTEGE GEGEA-EEPE NLGKLQFSLD BACU009785/1-473 GKGAKNAMNM KDMKGGQDED DAETGLTEGE GEGEEEKEPE NLGKLQFSLD 151 200 bmy_09440T0/1-222 ---LSPQLTV GILQAAELPA LDMGGTSDPY VKVFLLPDKK KKYETKVHRK ENSP00000356236/1-419 YDFQANQLTV GVLQAAELPA LDMGGTSDPY VKVFLLPDKK KKYETKVHRK ENSBTAP00000056405/1-417 YDFQANQLTV GVLQAAELPA LDMGGTSDPY VKVFLLPDKK KKYETKVHRK ENSTTRP00000010658/1-417 YDFQANQLTV GVLQAAELPA LDMGGTSDPY VKVFLLPDKK KKYETKVHRK BACU009785/1-473 YDFQANQLTV GILQAAELPA LDMGGTSDPY VKVFLLPDKK KKYETKVHRK 201 250 bmy_09440T0/1-222 TLNPAFNETF TFKVPYQELG GKTLVMAIYD FDRFSKHDII GEVKVPMNTV ENSP00000356236/1-419 TLNPAFNETF TFKVPYQELG GKTLVMAIYD FDRFSKHDII GEVKVPMNTV ENSBTAP00000056405/1-417 TLNPAFNETF TFKVPYQELG GKTLVMAIYD FDRFSKHDII GEVKVPMNTV ENSTTRP00000010658/1-417 TLNPAFNETF TFKVPYQELG GKTLVMAIYD FDRFSKHDII GEVKVPMNTV BACU009785/1-473 TLNPAFNETF TFKVPYQELG GKTLVMAIYD FDRFSKHDII GEVKVPMNTV 251 300 bmy_09440T0/1-222 DLGQPIEEWR DLQGGEKEE- ---------- ---------- --------VR ENSP00000356236/1-419 DLGQPIEEWR DLQGGEKEEP EKLGDICTSL RYVPTAGKLT VCILEAKNLK ENSBTAP00000056405/1-417 DLGQPIEEWR DLQGGEKEEP EKLGDICTSL RYVPTAGKLT VCILEAKNLK ENSTTRP00000010658/1-417 DLGQPIEEWR DLQGGEKEEP EKLGDICTSL RYVPTAGKLT VCILEAKNLK BACU009785/1-473 DLGQPIEEWR DLQGGEKEEP EKLGDICTSL RYVPTAGKLT VCILEAKNLK 301 350 bmy_09440T0/1-222 AGELGG-SAP HPRLCLCRRG S--------- ---------- ---------- ENSP00000356236/1-419 KMDVGGLSDP YVKIHLMQNG KRLKKKKTTV KKKTLNPYFN ESFSFEIPFE ENSBTAP00000056405/1-417 KMDVGGLSDP YVKIHLMQNG KRLKKKKTTV KKKTLNPYFN ESFSFEIPFE ENSTTRP00000010658/1-417 KMDVGGLSDP YVKIHLMQNG KRLKKKKTTV KKKTLNPYFN ESFSFEIPFE BACU009785/1-473 KMDVGGLSDP YVKIHLMQNG KRLKKKKTTV KKKTLNPYFN ESFSFEIPFE 351 400 bmy_09440T0/1-222 ---------- ---------- ---------- ---------- ---------- ENSP00000356236/1-419 QIQKVQVVVT VLDYDKLGKN EAIGKIFVGS NATGTELRHW SDMLANPRRP ENSBTAP00000056405/1-417 QIQKVQVVVT VLDYDKLGKN EAIGKIFVGS SATGTELRHW SDMLANPRRP ENSTTRP00000010658/1-417 QIQKVQVVVT VLDYDKLGKN EAIGKIFVGS SATGTELRHW SDMLANPRRP BACU009785/1-473 QIQRVQVVVT VLDYDKLGKN EAIGKIFMGS NATGTELRHW SDMLANPRRP 401 450 bmy_09440T0/1-222 -ATWRGTSGG QDTSLLFLPR L--------- ---------- ---------- ENSP00000356236/1-419 IAQWHSLKPE EEVDALLGKN K--------- ---------- ---------- ENSBTAP00000056405/1-417 IAQWHSLKPE EEVDALLGKS K--------- ---------- ---------- ENSTTRP00000010658/1-417 IAQWHSLKPE EEVDALLGKN K--------- ---------- ---------- BACU009785/1-473 IAQWHSLKPE EEVDALLGKN KRLHGWSGQA LAPGPDARSF QRPRSAATAA 451 500 bmy_09440T0/1-222 ---------- ---------- ------- ENSP00000356236/1-419 ---------- ---------- ------- ENSBTAP00000056405/1-417 ---------- ---------- ------- ENSTTRP00000010658/1-417 ---------- ---------- ------- BACU009785/1-473 FLQGQQTPSE VLKPALKFSN GDHALYL