KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:30 2014 Check: 00 .. Name: ENSTTRP00000003596/1-1159 Len: 1278 Check: 1008 Weight: 1.00 Name: ENSBTAP00000056421/1-1162 Len: 1278 Check: 3899 Weight: 1.00 Name: bmy_17834T0/1-1228 Len: 1278 Check: 7673 Weight: 1.00 Name: BACU002551/1-959 Len: 1278 Check: 9002 Weight: 1.00 // 1 50 ENSTTRP00000003596/1-1159 TVTAGTNFLL SIPEASANTI REAAFLSRRI P-PGHKNGKA RPGLGAPSVT ENSBTAP00000056421/1-1162 TVTVGTHFLP SRPTASANTV REPACRFPPL PAPGYKNSTE QPSLSAQSVT bmy_17834T0/1-1228 ---------- ---------- ---------- ---------- ---------- BACU002551/1-959 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000003596/1-1159 MGNAHSKSSD GASSLHSRPE LSFYSSFPRK WSENVFLDNE LLXXXXXXXX ENSBTAP00000056421/1-1162 MGNGHSKSGD REGAPRSRPE LSFYGSLPRK WSESIFLDNE LLTSKILSAL bmy_17834T0/1-1228 MGNPHSKSSD GASSLRGRPE LSFYSSFPRK WSENVFLDNE LLTSKILSVL BACU002551/1-959 MGNAHSKSSD GASSLRGRPE LLFYSSFPRK WSENVFLDNE LLTSKILSVL 101 150 ENSTTRP00000003596/1-1159 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000056421/1-1162 RPQSEQGLPT GHLRYPAHFL STHSVFASVA ASLKEHPRAT LLSDGSPRPT bmy_17834T0/1-1228 RPQSERGLRT GHLRYPAHFL STSSVFASVA ASLKEHPRAT LLSDGSPGLA BACU002551/1-959 RPQSERGLRT GHLRYPAHFL STSSVFASVA ASLKEHPRAT LLSDGSPGLA 151 200 ENSTTRP00000003596/1-1159 XXXXXXXXXX XXXXXXXXXX XXXXXXXPVT GEMDDTDTVS -EFKQ-ADDS ENSBTAP00000056421/1-1162 RNVGMTVSQK GGPQPAPSPA GTGTRLGPLT GEMDETDTLF PKLKQVADDS bmy_17834T0/1-1228 RNVGMTVSQK GGPQPAPSPA GTGTRLGPVT GEMDETDTLS LKFKQAADDS BACU002551/1-959 RNVGMTVSQK GGPQPAPSPA GTGTRLGPVT GEMDETDTLS LKFKQAADDS 201 250 ENSTTRP00000003596/1-1159 LSLTSXXXXX XXXX------ ---------- ---------- ---------- ENSBTAP00000056421/1-1162 LFLTSSSTEP IFIE------ ---------- ---------- ---------- bmy_17834T0/1-1228 LSLTSLNADS IFIEGTVTSI LSRVSGGLHS LGGARTHIRA SRGHGQGQPQ BACU002551/1-959 LSLTSLNADP ILIE------ ---------- ---------- ---------- 251 300 ENSTTRP00000003596/1-1159 ---------- -------XPY TASLRREIEA DAHEFEAESW SLSVDPAYVK ENSBTAP00000056421/1-1162 ---------- -------DPY TASLRGEVEA DTHEFEAESW SLSVDPEYVK bmy_17834T0/1-1228 ACHRPRAPEQ QPPILPSDPY TASLKREIEA DAHEFEAESW SLSVDPAYVK BACU002551/1-959 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000003596/1-1159 KQKREVVKRQ DVLYELMQTE AHHVRTLKIM LKVYSRALRE ELQFSSKTVS ENSBTAP00000056421/1-1162 KQKREVVKRQ DVLYELMQTE AHHVRTLKIM LKVYSRALRE ELQFSPKAVS bmy_17834T0/1-1228 KQKREVVKRQ DVLYELMQTE AHHVRTLKIM LKVYSRALRE ELQFSPKAIS BACU002551/1-959 ---------- ----ELMQTE AHHVRTLKIM LKVYSRALRE ELQFSPKAIS 351 400 ENSTTRP00000003596/1-1159 LLFPGADDLL EVHGHFLSRL KERRQESLEE GSDRNYIIQK IGDLLVQQFS ENSBTAP00000056421/1-1162 RLFPGADDLL EVHSHFLCRL KERRLESLEE GSAHNYIIRK IGDLLLQQFS bmy_17834T0/1-1228 LLFPGADDLL EVHGHFLSRL KERRQESLEE GSDRNYIVQK IGDLLVQQFS BACU002551/1-959 LLFPGADDLL EVHGHFLSRL KERRQESLEE GSDRNYIVQK IGDLLVQQFS 401 450 ENSTTRP00000003596/1-1159 GENGERMKEK YGVFCSGHNE AVSHYKLLLQ QNKKFQNLIK ---------- ENSBTAP00000056421/1-1162 GENGERMKEK YSVFCSGHND AVSHYKLLLQ QNKKFQNLIK ---------- bmy_17834T0/1-1228 GENGERMKEK YGVFCSGHNE AVSHYKLLLQ QNKKFQNLIK QVRLPLPLRP BACU002551/1-959 GENGERMKEK YGVFCSGHNE AVSHYKLLLQ QNKKFQNLIK ---------- 451 500 ENSTTRP00000003596/1-1159 ---------- ---------- -RIGNFSIVR RLGVQECILL VTQRITKYPV ENSBTAP00000056421/1-1162 ---------- ---------- -RIGNFSIVR RLGVQECILL VTQRITKYPV bmy_17834T0/1-1228 FCMQQAVPAF KYLQSGKDKV PRIGNFSIVR RLGVQECILL VTQRITKYPV BACU002551/1-959 ---------- ---------- -RIGNFSIVR RLGVQECILL VTQRITKYPV 501 550 ENSTTRP00000003596/1-1159 LVERIIQNTE ADPEDHKDLT QALNLIKGII SQVDARVSEC EKGQRLREIA ENSBTAP00000056421/1-1162 LVERIIQNTE AGSEDHRDLT QALNLIKDII SQVDARVSEC EKGQRLREIA bmy_17834T0/1-1228 LVERIIQNTE ADSEDHRDLT QALNLIKGVI SQVDARVSEC ERGQRLREIA BACU002551/1-959 LVERIIQNTE ADSEDHRDLT QALSLIKGVI SQVDARVSEC EKGQRLREIA 551 600 ENSTTRP00000003596/1-1159 GKMDLKSSSK LKNGLTFRKE DMLQRQLHLE GTLCWKTTSG RLKXXXXXXX ENSBTAP00000056421/1-1162 GKMDLKSSSK LKNGLTFRKE DMLQRQLHLE GTLCWKTTSG RLKDVLAVLL bmy_17834T0/1-1228 GKMDLKSSSK LKNGLTFRKE DMLQRQLHLE GTLCWKTTSG RLKDVLAVLL BACU002551/1-959 GKMDLKSSSR LKNGLTFRKE DMLQRQLHLE GTLCWKTTSG RLKDVLAVLL 601 650 ENSTTRP00000003596/1-1159 XXXXXXXXXX XXXXXXXXXD SKRPIISLQK LIVREVANEE KAMFLISASL ENSBTAP00000056421/1-1162 TDVLLLLQEK DQKYVFASVD SKRPVISLQK LIVREVANEE KAMFLISASL bmy_17834T0/1-1228 TDVLLLLQEK DQKYVFASVD SKRPIISLQK LIVREVANEE KAMFLISASL BACU002551/1-959 TDVLLLLQEK DQKYVFASVD SKRPIISLQK LIVREVANEE KAMFLISASL 651 700 ENSTTRP00000003596/1-1159 HGPEMYEIYT SSKEDRNTWM AHIRRAVESC PDEEEGPYSE AEEERKMVEA ENSBTAP00000056421/1-1162 HGPEMYEIYT SSKEDRNTWM AHIRRAVESC PDEEEGPFSE AEEEKKVVET bmy_17834T0/1-1228 HGPEMYEIYT SSKEDRNTWM AHIRRAVESC PDEEEGPYSE AEEERKVLEA BACU002551/1-959 HGPEMYEIYT SSKEDRNTWM AHIRRAVESC PDEEEGPYSE AEEERKVLEA 701 750 ENSTTRP00000003596/1-1159 RAVRLRDFQE RLNMKDQQIA QSLSEKQHIY LEMAEMSGLE DLAPARLLFR ENSBTAP00000056421/1-1162 RAVRLRDFQE RLNRKDQQIA QSLSEKQQIY LEMAEMSGLE DLALSRLLFR bmy_17834T0/1-1228 RAVRLRDFQE RLNIKDQQIA QSLSEKQHIY LEMAEMSGLE DLAPARLLFR BACU002551/1-959 RALRLRDFQE RLNIKDQQIA QSLSEKQHIY LAMAEMSGLE DLAPARLLFR 751 800 ENSTTRP00000003596/1-1159 GGDPPENLQG ELILKSAMSE IEDIQSLICR RLGSTNGQVD DGGGSLSPAR ENSBTAP00000056421/1-1162 GGDPPENLQG ELILKSAMSE IEDIQSFICR RLGNAYCQAE DGGSAGSPGS bmy_17834T0/1-1228 GGDAPENLQG ELILKSAMSE IEDIQSLICR RLGSANGQVD DGGGSSAPAR BACU002551/1-959 GGDAPENLQG ELILKSAMSE IEDIQSLICR RLGSANGQVD DGGGSSAPAR 801 850 ENSTTRP00000003596/1-1159 RVEASGGYDS AGSPGKNGSF -KNVCXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000056421/1-1162 RAGGTRGISR TWLGVSDGSL QKNMCSSDLS PRDWQGLVSS LDSRPGDTQG bmy_17834T0/1-1228 RVEASGGYDS AGSPSKNGSF QKNVCSSNPS LRDWQGPAGS PDSRLGDTPG BACU002551/1-959 RVEASGGYDS ---PGKNGSF QKNVCSSNPS LRDWQGPAGS PDSRLGDTPG 851 900 ENSTTRP00000003596/1-1159 XXXXXXXX-- ---------- ---------X XAEAPGAEPS PRLPALLESE ENSBTAP00000056421/1-1162 APEEASKV-- ---------- ---------- -AESPGADPG PHPPAVLELE bmy_17834T0/1-1228 ASEEAPQAVR CLLGMFPSSI QSRPQCFQLS SAEAPGAEPS PRLPALLESE BACU002551/1-959 ASEEAPQA-- ---------- ---------- -AEAAGAEPS PRLPALLESE 901 950 ENSTTRP00000003596/1-1159 -LVRRIQTLS QLLLSLQAVI AQQDSYVETQ RAALQEREKQ FRLQSTRGNL ENSBTAP00000056421/1-1162 -LVQRIQTLS QLLLSLQVVI AQQDSYVEIQ KAAIQEREKQ FRLQSTRGNL bmy_17834T0/1-1228 QLVRRIQTLS QLLLSLQAVI AQQDSYVETQ RAAIQEREKQ FRLQSTRGNL BACU002551/1-959 QLVRRIQTLS QLLLSLQAVI AQQDSYVETQ RAAIQEREKQ FRLQSTRGNL 951 1000 ENSTTRP00000003596/1-1159 LLEQERQRNF EKQREELAGV QKLQGQLRLE QQRWERERER ERQELGLASA ENSBTAP00000056421/1-1162 LLEQERQRNF EKQREELAGV QKLQGQLRLE QQRWEREREQ QRRELDQASA bmy_17834T0/1-1228 LLEQERQRNF EKQREELAGV QKLQGQLRLE QQRWACERGR QRQELDVAAA BACU002551/1-959 LLEQERQRNF EKQREELAGV QKLQGQLRLE QQRWECERGR QRQELDVAAA 1001 1050 ENSTTRP00000003596/1-1159 RLQQRETEAL RLQEQLSQER EELERQRQAY QHDLERLREA QRAVERERER ENSBTAP00000056421/1-1162 RLQQRESELL RLQERLNQER EELERQRQAY QHDLERLREA QRAVERERER bmy_17834T0/1-1228 RLRQRESESL RVQEQLSQER EELERQRQAY QHDLERLREA QRAVERERER BACU002551/1-959 RLRQRESESL R--------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000003596/1-1159 LELLRRVKKQ NMVPGAAGAL PPEVLAEAQP PSHTPSFNGE GLE------- ENSBTAP00000056421/1-1162 LEVLRRLKKQ NTAPGA---L PPEALAETQP LSHTPSFNGN GLDGSMTLTK bmy_17834T0/1-1228 LELLRRVKKQ STVPGAAGAL PPEVLAEAQP PSHTPSFNGE GLEGPAALAK BACU002551/1-959 ---------- ---DGARG-- ---------- --------GR GAAARGA-CR 1101 1150 ENSTTRP00000003596/1-1159 --GPRVSSLL SGAGPEYAER PEVSRRDSTP AEGRPAKSDV PIQLLSATNQ ENSBTAP00000056421/1-1162 APGPRPTSLV SSAGSEYAER PEVARRDSA- ----PAKSEV PIQLLSATNQ bmy_17834T0/1-1228 APGPRVSSLL SGAGPEYAER PEVTRRDSAL AEGRPAKSDV PIQLLSATNQ BACU002551/1-959 APGPRVSSLL SGAGPEYAER PEVTRRDSAL AEGRPAKSDV PIQLLSATNQ 1151 1200 ENSTTRP00000003596/1-1159 IQRQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS FDLKQPLLLN ENSBTAP00000056421/1-1162 IQRQAAVQQQ IPTKLAASTK GGKDKGGKNR GSQRWDSSAS FDLRQPLLLN bmy_17834T0/1-1228 IQRQAAVQQQ IPTKLAASTK GGKDKGGKSR GSHRSESSAS FDLKQPLLLN BACU002551/1-959 IQRQAAVQQQ IPTKLAASTK GGKDKGGKSR GSHRSESS-- ---------- 1201 1250 ENSTTRP00000003596/1-1159 KFMGKEENAS RGRRSQSPVL RSSTPPPDSC LPAPCPVPAD VPNEYFTLKA ENSBTAP00000056421/1-1162 KLMGKEENTS RNRRSLSPVL PSSTPHQDPS LPAPTPGPAD VPTESLPLKT bmy_17834T0/1-1228 KFMGKEENAS RSRRSLSPVL RSSTPPPDCC LPAPTPVPAD VPNEFFTLKA BACU002551/1-959 ---------- ---------- -------DSC LPASTPVPAD VPSEYFTFKA 1251 1300 ENSTTRP00000003596/1-1159 WGASFPPVAL FSTPLDKEEA SKEDVIFF ENSBTAP00000056421/1-1162 WGPSFPPGAP SSTPVNKEET GKEDVIFF bmy_17834T0/1-1228 WGASFPPVAL PSTPLDKEEA SKEDVIFF BACU002551/1-959 WGASSPPVAL SSTPLDKEEA SKEDVIFF