KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:31 2014 Check: 00 .. Name: ENSBTAP00000056429/1-1009 Len: 1044 Check: 7458 Weight: 1.00 Name: BACU004098/1-741 Len: 1044 Check: 2921 Weight: 1.00 Name: bmy_18918T0/1-567 Len: 1044 Check: 7015 Weight: 1.00 Name: ENSTTRP00000009028/1-911 Len: 1044 Check: 5664 Weight: 1.00 // 1 50 ENSBTAP00000056429/1-1009 IGSHGMALEK TALISGCKKD MRKSSSPSLS NCNSVLANKI FGIPLDELQQ BACU004098/1-741 ---------- ---------- MRKSSSPSLN NCNSVLAHKI FGIPLDELQQ bmy_18918T0/1-567 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009028/1-911 ---------- ---------- MRKSSSPSLN NCNSVLANKI FGIPLDELQQ 51 100 ENSBTAP00000056429/1-1009 GGHPDNEVPF IVRHVVDYIE EHGGLEQQGL FQVNGNAETV EWLRQRYDSG BACU004098/1-741 GGHPDNEVPF IVRHVVDYIE EHGGLEQQGL FQVNGNAETV EWLRQRYDSG bmy_18918T0/1-567 ---------- -IGNFLSYVS D--------- ---------- ---------G ENSTTRP00000009028/1-911 GGHPDNEVPF IVRHVVDYIE EHGGLEQQGL FQVNGNAETV EWLRQRYDSG 101 150 ENSBTAP00000056429/1-1009 EEVDLVKEAD VPSAISLLRF FLQELPEPVI PGSLHIHLMQ LSQDYNNEDE BACU004098/1-741 EEVDLVKEAD VPSAISLLRF FLQELPEPVI PGSLHIHLMQ LSQDYNNEDE bmy_18918T0/1-567 NSINTV---- ---------- ---------- ---------- ---------- ENSTTRP00000009028/1-911 EEVDLVKEAD VPSAISLLRF FLQELPEPVI PGSLHIHLMQ LSQDYNNEDE 151 200 ENSBTAP00000056429/1-1009 FGRKLRFLLQ QLPPVNYSLL KFLCRFLANV ASHHEEIWSA NSLAAVFGPD BACU004098/1-741 FGRKLRFLLQ QLPPVNYSLL KFLCRFLANV ASHHEEIWSA NSLAAVFGPD bmy_18918T0/1-567 ---------- ---------- --LCSF---- ---------- ---------- ENSTTRP00000009028/1-911 FGRKLRFLLQ QLPPVNYSLL KFLCRFLANV ASHHEEIWSA NSLAAVFGPD 201 250 ENSBTAP00000056429/1-1009 VFHIYTDVED LKEQEIVSRI MAGLLENYYE FFENEEKEND KKRTIQISEI BACU004098/1-741 VFHIYTDVED LKEQEIVSRI MAGLLENYYD FFENEEEDFS SNDLSSITEQ bmy_18918T0/1-567 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009028/1-911 VFHIYTDVED LKEQEIVSRI MAGLLENYYE FFENEEEDFS SNDLSSITEQ 251 300 ENSBTAP00000056429/1-1009 SFLSTLYFQS FIPLMFRITY EQNIDKQKVK LIRGSRRTFE AKQSSNLVLK BACU004098/1-741 AGSSVLHKLE SGEQAFHEAL EKGITAVKER RDVNELSEEE EEDEKLEHIE bmy_18918T0/1-567 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009028/1-911 XXXXXXXXXX XXXXXXXX-- ---------- ---------- ---------- 301 350 ENSBTAP00000056429/1-1009 PKNSIFLPVF FLGLSTLKFC LFEFSSENSQ LSAKKITLSL QMDVSPRSQF BACU004098/1-741 ---------- ---------E LPEEGAEKSD DMPEVVQLRM TENILEPNSV bmy_18918T0/1-567 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009028/1-911 ---------- ---------X XXXXXXXXXX XXPEVVQLRM TENILEPNST 351 400 ENSBTAP00000056429/1-1009 --YYSAHTSP ISMLPASADI LERTIRAAVE QHLFDLQSSI DHDLKNLQQQ BACU004098/1-741 TASTSAHISP IGILPASADI LERTIRAAVE QHLFDLQSSI DHDLKNLQQQ bmy_18918T0/1-567 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009028/1-911 --ATSAHISP ISILPASVDI LERTIRAAVE QHLFDLQSSI DHDLKNLQQQ 401 450 ENSBTAP00000056429/1-1009 SLVKPSQTS- -KNHKEKNQV KVGTNEGMRI KRDNNINSIN KLPNCSTNQQ BACU004098/1-741 SLVCNNEAGS VNCDGEGSNN QVDIADGIIN ASECNRDCSE PVASTNLDNE bmy_18918T0/1-567 ---------- ---------- ---------- -------C-- ---------- ENSTTRP00000009028/1-911 SLVCNNEAGS VNCDGEGSNN QVDIADGIIN ASECNRDCSE PVASTNLDNE 451 500 ENSBTAP00000056429/1-1009 RIR------S EHRHRFSGSL AKPKGQTPRN QSSEIHLKRN YLQRYLLFRM BACU004098/1-741 VMQQDFVFED EENNQTVGIL LEPCSD--SG DGEDGCLER- --KEYLSF-- bmy_18918T0/1-567 ---------- ----QTVGXL LEPCSD--RG DGEDGCLER- --KEYLSF-- ENSTTRP00000009028/1-911 VMQQDFVFED EENNQTVGIL LEPCGD--HG DGEDGCLER- --KECLSF-- 501 550 ENSBTAP00000056429/1-1009 FGIYEDAPPG DFKTMHLQRD GEEQEISHKM FITSYLFSGK QHLAQLNSQY BACU004098/1-741 ---------- ---------- -DSDKLSH-- ----VILDSS SKICDLNANT bmy_18918T0/1-567 ---------- ---------- -DSDKLSH-- ----FILDSS SKICDLNANT ENSTTRP00000009028/1-911 ---------- ---------- -DSDKLSH-- ----FILDSS SKICDLNANT 551 600 ENSBTAP00000056429/1-1009 NFE------- ELDSVPSCFV TGFRNLKCNS LCEIRTEVCF ---------- BACU004098/1-741 ESEVPGGQSV GVQGEAACVQ IPHLDLKNVS DGDKW----- ---------- bmy_18918T0/1-567 ESEVPGGQSV GVQGEAACVQ IPHLDLKNVS DGDKWEASCP ITFPLIDFKT ENSTTRP00000009028/1-911 ESEVPGGQSV GVQGEAACVQ IPHLDLKNVS DGDKW----- ---------- 601 650 ENSBTAP00000056429/1-1009 -------PEP FPAFKSWQED SESGEAQLSP QAGRMNHHPL EEDCPPVLSH BACU004098/1-741 -------EEP FPAFKSWQED SESGEAQLSP QAGRMNHHPL EEDCPPVLSH bmy_18918T0/1-567 MHLQRDGEEP FPAFKSWQED SESGEAQLSP QAGRMNHHPL EEDCPPVLSH ENSTTRP00000009028/1-911 -------EEP FPAFKSWQED SESGEAQLSP QAGR-NHHPL EEDCPPVLSH 651 700 ENSBTAP00000056429/1-1009 RSLDFGQSQR FLHDPEMLDS SSKALSFARI RRSSFSSKDE KREDRTPYQL BACU004098/1-741 RSLDFGQSQR FLLDPETLDS SSKALSFARI RRSSFSSKDE KREDRTPYQL bmy_18918T0/1-567 RSLDFGQSQR FLHDPETLDS SSKALSFARI RRSSFSSKDE KREDRTPYQL ENSTTRP00000009028/1-911 RSLDFGQSQR FLHDPETLDS SSKALSFART RRSSFSSKDE KREDRTPYHL 701 750 ENSBTAP00000056429/1-1009 VKKLQKKIRQ FEEQFERERN GKPSYSDIAA NPKVLKWMTE LTKLRKQIKD BACU004098/1-741 VKKLQKKIRQ FEEQFERERN SKPSYSDIAA NPKVLKWMTE LTKLRKQIKD bmy_18918T0/1-567 VKKLQKKIRQ FEEQFERERN SKPSYSDIAA NPKVLKWMTE LTKLRKQIKD ENSTTRP00000009028/1-911 VKKLQKKIRQ FEEQFERERN SKP-YSDIAA NPKVLKWMTE LT--LKQIKD 751 800 ENSBTAP00000056429/1-1009 AKHKTSDGEF VPQTRPRSNT LPKSFGSSLD HEDEENEDDS KVIHKEKKPS BACU004098/1-741 AKHKTSDGEF VPQTRPRSNT LPKSFGSSLD HEDEENEDES RVIQKEKKPS bmy_18918T0/1-567 AKHKTSDGEF VPQTRPRSNT LPKSFGSSLD HEDEENEDES RVIQKEKKPS ENSTTRP00000009028/1-911 AKHKTSDGEF VPQTRPRSNT LPKSFGSSLD HEDEENEDES RVIQKEKKPS 801 850 ENSBTAP00000056429/1-1009 KEATLELILK RLKEKRVERC LPEDIKKMTK DHLVEEKTSL QKSLLYYESQ BACU004098/1-741 KEATLELILK RLKEKRVERC LPEDI----- ---------- -KVILSY--- bmy_18918T0/1-567 KEATLELILK RLKEKRVERC LPEDIKKMTK DHLVEEKTSL QKSLLYYESQ ENSTTRP00000009028/1-911 KEATLELILK RLKEKRVERC LPEDIKKMTK DHLVEEKTSL QKSLLYYESQ 851 900 ENSBTAP00000056429/1-1009 HGRPVTREER HIVKPLYDRY RLVKQMLTRA SITPVLGSPS TKRRGQMLQP BACU004098/1-741 ---------- ---------- ---------- ---------- ---------- bmy_18918T0/1-567 HGRPVTREER HIVKPLYDRY RLVKQMLTRA SITPVLGSPS TKRRGQMLQP ENSTTRP00000009028/1-911 HGRPVTREER HIVKPLYDRY RLVKQMLTRA SITPVLGSPS TKRRGQMLQP 901 950 ENSBTAP00000056429/1-1009 IIEGETAHFF EEIK-EEEED GVCLSSELND ILKTAVQAQS SLENSESDVE BACU004098/1-741 ---------- ---------- GFC------- ---------- ---------- bmy_18918T0/1-567 IIEGETAHFF EEIK-EEEED GVSLSSELTD ILKTAVQAQS SLENSESDME ENSTTRP00000009028/1-911 IIEGETAHFF EEIKEEEEED GVSLSSELTD ILKTAVQAQS SLENSESDME 951 1000 ENSBTAP00000056429/1-1009 ENQEKLALDL RLSSTRAASM PELLEQLWKA RAEKKKLRKT LRDFEEAFYQ BACU004098/1-741 ---------- ---------- PD-------- ---------- ---------- bmy_18918T0/1-567 ENQEKLALDL RLSSTRAASM PELLEQLWKA RAEKKKLRKT LREFEEAFYQ ENSTTRP00000009028/1-911 ENQEKLALDL RLSSTRAASM PELLEQLWKA RAEKKKLRKT LREFEEAFYQ 1001 1050 ENSBTAP00000056429/1-1009 QNGRNAQKED RVPVLEEYRE YKKIKAKLRL LEVLISKQDS SKSI BACU004098/1-741 ---------- ---------- ---------- ---------- ---- bmy_18918T0/1-567 QNGRNVQKED RVPVLEEYRE YKKIKAKLRL LEVLISKQDS SKSI ENSTTRP00000009028/1-911 QNGRNAQKED RVPVLEEYRE YKKIKAKLRL LEVLISKQDS SKSI