KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:32 2014 Check: 00 .. Name: ENSBTAP00000056439/1-1676 Len: 1695 Check: 2981 Weight: 1.00 Name: ENSTTRP00000014027/1-1690 Len: 1695 Check: 699 Weight: 1.00 Name: bmy_21139T0/1-1226 Len: 1695 Check: 5816 Weight: 1.00 Name: BACU000437/1-984 Len: 1695 Check: 1218 Weight: 1.00 // 1 50 ENSBTAP00000056439/1-1676 ---------- ----VERCMS VMQSGTQMIK LKRGTKGLVR LFYLDEHRTR ENSTTRP00000014027/1-1690 MADLEVYKNL SPEKVERCMS VMQSGTQMIK LKRGTKGLVR LFYLDEHRTR bmy_21139T0/1-1226 ---------- ---------- ---------- ---------- ---------- BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000056439/1-1676 LRWRPSRKSE KAKILIDSIY KVTEGRQSEI FHRQAEGNFD PSCCFTIYHG ENSTTRP00000014027/1-1690 LRWRPSRKSE KAKILIDSIY KVTEGRQSEI FHRQAEGNFD PSCCFTIYHG bmy_21139T0/1-1226 ---------- ---------- ---------- ---------- ---------- BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000056439/1-1676 NHMESLDLIT SNPEEARTWI TGLKYLMAGI SDEDSLAKRQ RTHDQWVKQT ENSTTRP00000014027/1-1690 NHMESLDLIT SNPEEAR-WI TGLKYLMAGI SDEDSLAKRQ RTHDQWVKQT bmy_21139T0/1-1226 ---------- ---------- ---------- ---------- ---------- BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000056439/1-1676 FEEADKNGDG LLNIEEIHQL MHKLNVNLPR RKVRQMFQEA DTDENQGTLT ENSTTRP00000014027/1-1690 FEEADKNGDG LLNIEEIHQL MHKLNVNLPR RKVRQMFHEA DTDENQGTLT bmy_21139T0/1-1226 ---------- ---------- ---------- ---------- ---------- BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000056439/1-1676 FEEFCVFYKM MSLRRDLYLL LLSYSDKKDH LTVEELAQFL KVEQKMTNVT ENSTTRP00000014027/1-1690 FEEFCVFYKM MSLRRDLYLL LLSYSDKKDH LTVEELAQFL KVEQKMTNVT bmy_21139T0/1-1226 ---------- ---------- ---------- ---------- ---------- BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000056439/1-1676 TDYCIDIIRK FEVSEENKVK NVLGIEGFTN FMRSPACDIF NPLHHEVYQD ENSTTRP00000014027/1-1690 TDYCIDVIRK FEVSEENKAK NVLGIEGFTN FMRSPACDIF NPLHHEVYQD bmy_21139T0/1-1226 ---------- ---------- ---------- ---------- ---------- BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000056439/1-1676 MDQPLCNYYI ASSHNTYLTG DQLLSQSKVD MYARVLQEGC RCVEVDCWDG ENSTTRP00000014027/1-1690 MDQPLCHYYI ASSHNTYLTG DQLLSQSKVD MYARVLQEGC RCVEVDCWDG bmy_21139T0/1-1226 ---------- ---------- ---------- ---------- ---------- BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000056439/1-1676 PDGQPVVHHG YTLTSKILFR DAAHPINKHA FVKNEFPVIL SIENHCSIQQ ENSTTRP00000014027/1-1690 PDGEPVVHHG YTLTSKILFR DVVETINKHA FVKNEFPVIL SIENHCSVQQ bmy_21139T0/1-1226 ---------- ---------- ---------- ---------- ---------- BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000056439/1-1676 QRKIAQYLKG IFQDKLDLSS IDTGETKQLP SPQSLKGKIL VKGKKLPYHL ENSTTRP00000014027/1-1690 QRKIAQYLKG IFRDKLDLSS VDTGETKQLP SPQSLKGKIL VKGKKLPYHL bmy_21139T0/1-1226 ---------- ---------- ---------- ---------- --GKLFPL-- BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000056439/1-1676 GDDAEEGEVS DEDSADEIED ECKFKLHYNN GTTEHQVESF IRKKLESLLK ENSTTRP00000014027/1-1690 GDDAEEGEVS DEDSADEIED ECKFKLHYNN GTTEHQVESF IRKKLESLLK bmy_21139T0/1-1226 ---------- ---------- ---FNSSQNN GTTEHQVESF IRKKLESLLK BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000056439/1-1676 ESQIRDKEDP DSFTVRALLK ATHEGLNAHL KQHPDAKESG KKAHGRSLMT ENSTTRP00000014027/1-1690 ESQIRDKEDP DSFTVRALLK ATHEGLNAHL KQHPDVKESG KKTHGRSLMT bmy_21139T0/1-1226 ESQIRDKEDA DSFTVRALLK ATHEGLNAHL KQHPDVKESG KKTHGRSLMT BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000056439/1-1676 NFGKHKETSA VNVLKYKFDK GSTLNQRAGR EGGGVFYRLG RRRKTMKLCR ENSTTRP00000014027/1-1690 NFGKHKKTTK SRSKSCSADE EEDAQQNPGK ETGQ-LYRLG RRRKTMKLCR bmy_21139T0/1-1226 NFGKHKKTTK SRSKSYSADE EEDAQQNPGK ETGQ-LYRLG RRRKTMKLCR BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000056439/1-1676 ELSDLVVYTN SVAAQDIVDD GTTGNVLSFS ETRAHQVVQQ KSEQFMIYNQ ENSTTRP00000014027/1-1690 ELSDLVVYTN SVAAQDIVDD GTTGNVLSFS ETRAHQVVQQ KSEQFMTYNQ bmy_21139T0/1-1226 ELSDLVVYTN SVAAQDIVDD GTTGNVLSFS ETRAHQVVQQ KSEQFMIYNQ BACU000437/1-984 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000056439/1-1676 KQLTRIYPSA YRIDSSNFNP LPYWNAGCQL VALNYQSEGR MMQLNRAKFK ENSTTRP00000014027/1-1690 KQLTRIYPSA YRIDSSNFNP LPYWNAGCQL VALNYQSEGR MMQLNRAKFK bmy_21139T0/1-1226 KQLTRIYPSA YRIDSSNFNP LPYWNAGCQL VALNYQSEGR MMQLNRAKFK BACU000437/1-984 ---------- ---------- ---------- ---------- MMQLNRAKFK 701 750 ENSBTAP00000056439/1-1676 TNGNCGYVLK PQQMCKGTFN PFSGDPLPAN PKKQLILKVI SGQQLPKPPD ENSTTRP00000014027/1-1690 TNGNCGYVLK PQQMCKGTFN PFSGDPLPAN PKKQFILKVI SGQQLPKPPD bmy_21139T0/1-1226 TNGNCGYVLK PQQMCKGTFN PFSGDPLPAN PKKQFILKVI SGQQLPKPPD BACU000437/1-984 TNGNCGYVLK PQQMCKGTFN PFSGDPLPAN PKKQFILKVI SGQQLPKPPD 751 800 ENSBTAP00000056439/1-1676 SMFGDRGEII DPFVEVEIIG LPVDCSKDQT RVVDDNGFNP VWEETLTFTV ENSTTRP00000014027/1-1690 SMFGDRGEII DPFVEVEIIG LPVDCCKDQT RVVDDNXXXX XXXXXXXXXX bmy_21139T0/1-1226 SMFGDRGEII DPFVEVEIIG LPVDCCKDQT RVVDDNGFNP VWEETLTFTV BACU000437/1-984 SMFGDRGEII DPFVEVEIIG LPVDCCKDQT RVVDDNGFNP VWEETLTFTV 801 850 ENSBTAP00000056439/1-1676 HMPEIALVRF LVWDHDPIGR DFVGQRTVTF SSLVPGYRHV YLEGLTEASI ENSTTRP00000014027/1-1690 XXXXXXXXXX XXWDHDPIGR DFVGQRTVTS S--VPGYRHV YLEGLTEASI bmy_21139T0/1-1226 HMPEIALVRF LVWDHDPIGR DFVGQRTVTF SSLVPGYRHV YLEGLTEASI BACU000437/1-984 HMPEIALVRF LVWDHDPIGR DFVGQRTVTF SSLVPGYRHV YLEGLTEASI 851 900 ENSBTAP00000056439/1-1676 FVHITINEIY GKWSPLILNP SYTILHFLGA TKNRQLQGLK GLFNKNPRHN ENSTTRP00000014027/1-1690 FVHITINEIY GKWSPLILNP SYTILHFLGA TKNRQLQGLK GLFNKNPRHS bmy_21139T0/1-1226 FVHITINEIY GKWSPLILNP SYTILHFLGA TKNRQLQGLK GLFNKNPRHS BACU000437/1-984 FVHITINEIY G--------- ---------- -KNRQLQGLK GLFNKNPRHS 901 950 ENSBTAP00000056439/1-1676 SSENTCHYIR KRSIGDKILR RTASAPAKGR KKSKMGFQEM VEMKDSVSEA ENSTTRP00000014027/1-1690 SSENSSHYVR KRSIGDRILR RTASAPAKGR KKSKMGFQEM VEVKDSVSEA bmy_21139T0/1-1226 SSENSSHYVR KRSIGDRILR RTASAPAKGR KKSKMGFQEM VEIKDSVSEA BACU000437/1-984 SSENSSHYVR KRSIGDRILR RTASAPAKGR KKSKMGFQEM VEIKDSVSEA 951 1000 ENSBTAP00000056439/1-1676 ARDQDGVLRR TTRSLQARPV SMPVDRSLLG ALSLPVSETT KDTEGKENSQ ENSTTRP00000014027/1-1690 ARGQGGVLRR TTRSLQARPV SMPVDRSLLG ALSLPISETA KDTEGKENSL bmy_21139T0/1-1226 ARDQDGVLRR TTRSLQARPV SMPVDRSLLG ALSLPISETA RDTEGKENSL BACU000437/1-984 ARDQDGVLRR TTRSLQARPV SMPVDRSLLG ALSLPISETA RDTEGKENSL 1001 1050 ENSBTAP00000056439/1-1676 AEDKDARRDG KASVKDQHLP NFNKKLSSSS SALIHKDISQ GNSAVSTANL ENSTTRP00000014027/1-1690 AEDTDDRRDG KASIKDQHFP NFNKKLSASS SALLHKDISH GDSAVSTANL bmy_21139T0/1-1226 AEDKDGRRDG KASIKDQHFP NFNKRLSASS SALLHKDISH GDSAVSTANV BACU000437/1-984 AEDKDGRRDG KASIKDQHFP NFNKRLSASS SALLHKDISH GDSAVSTANL 1051 1100 ENSBTAP00000056439/1-1676 SITEQLVPGP KGGRTKSNML SDCWEHQCLS RSLSPRQHLA HDPAVSPSKD ENSTTRP00000014027/1-1690 SITEQLLPGP KGGRTKSNVL SDHQEHQCTN KSLSPRQHLA RDPAVSLTQD bmy_21139T0/1-1226 SITEQLVPGP KGGRTKSNVL SDRQEHQCTN KSLSPRQHLA RDPAVSLTQD BACU000437/1-984 SITEQLVPGP KGGRTKSNVL SDRQEHQCTN KSLSPRQHLA RDPAVILTQD 1101 1150 ENSBTAP00000056439/1-1676 LCGVKTKENG NAGGFVVGKS TLSGSILSQS NLEIKKLEGN WDKGRAATSF ENSTTRP00000014027/1-1690 LCGVKTKENG NAGGFVVGKS ALSGSILSQS NLEIKKLEGN WDKGRAATSF bmy_21139T0/1-1226 LCGVKTKENG NAGGFMVGKS ALSGSILSQS NLEIKKLEGN WDKGRAATSF BACU000437/1-984 LCGVKTKENG NAGGFVVGKS ALSGSILSQS NLEIKKLEGN WDKGRAATSF 1151 1200 ENSBTAP00000056439/1-1676 SLSDVSTLCS DAPDLHSTAI LQESEISHLI DNVTLTNENE PGSSISALIG ENSTTRP00000014027/1-1690 SLSDVSTLCS DIPDLHSTAI LQESEISHLI DNVTLTNENE PGSSISALIG bmy_21139T0/1-1226 SLSDVSTLCS DTPDLHSTAI LQESEISHLI DNVTLTNENE AGSSISALIG BACU000437/1-984 SLSDVSTLCS DTPDLHSTAI LQESEISHLI DNVTLTNENE PGSSISALIG 1201 1250 ENSBTAP00000056439/1-1676 QFDETGNQAN PTVVSHLQSP SVMSGHPPVP TMDLKMPFKP GFSNGKPKSS ENSTTRP00000014027/1-1690 QFDETSDQVN PTVLSHLQSP SVIAGHPPLP TMDLKMPFKH GFSSGKPKSS bmy_21139T0/1-1226 QFDETRDQVN PTVVSHLQSP SVIAGHPPLP TMDLKMPFKH GFSSGKPKSS BACU000437/1-984 QFDETRDQVN PTVVSHLQSP SVVAGHPPLP TMDLKMPFKH GFSSGKPKSS 1251 1300 ENSBTAP00000056439/1-1676 FLCSSPEQIA LSGHETCECS THTAVGETMC TPVSKMKPDN DLSGKAMTGA ENSTTRP00000014027/1-1690 FLCSSPEQTA FLGHENSECS THAAVCESIC TPVSKTKADD DLSGKTKTGA bmy_21139T0/1-1226 FLCSSPEQIA FLGHENSEXS THAAVCETIC TPVPKTKADD DLSGKTKTGA BACU000437/1-984 FLCSSPEQIA FLGHDNSECS THAAVCETIC TPVSKTKADD DLSGKTKTRA 1301 1350 ENSBTAP00000056439/1-1676 IENNLPQSSN TSHCWLPESP THGKDWEILK NPSPATSTDL TLEDVIAAPT ENSTTRP00000014027/1-1690 MENNLPLSSN NPHCWLLKSP THKKDWEILK NHSPATSTDL TLKDVMVDPT bmy_21139T0/1-1226 MENNLPLSSN NPPCWLPKSP THKKDWEILK NHSPATSTDL TLEDVIVDPT BACU000437/1-984 MENNLPLSSN NPPCWLPKSP THKKDWEILK NRSPATSTDL TLEDVIVDAT 1351 1400 ENSBTAP00000056439/1-1676 LSLNSGESSL VEMDGDSENL SLTTYEYRRE GTSHLTSPLK VKYSPAAVEH ENSTTRP00000014027/1-1690 LCLNSGESSL VEMDGDSQSL PLTTYGYRRE GTSHLASPLK LKYSQDVVEH bmy_21139T0/1-1226 LCLNSGESSL VEMDGDSQSL PLTTYGYRRE GTSHLASPLK LKYSQDVVEH BACU000437/1-984 LCLNSGESSL VEMDGDSQSL PLTTYGYRRE GTSHLASPLK LKYSQDVVEH 1401 1450 ENSBTAP00000056439/1-1676 FQRGLRNGYC KETLHPSVSE IFN-NTQDVK NQNISHLAYQ GAGFMHNHFS ENSTTRP00000014027/1-1690 FQRGLRNGYC KETLHSSVSE IFNSSIQDVK NQNISRLAYQ GAGFMHNRFS bmy_21139T0/1-1226 FQRGLRNGYC KETLHSSVSE IFN-SIQDVK NQNISHLAYQ GAGFMHNHFS BACU000437/1-984 FQRGLRNGYC KETLHSSVSE IFN-SIQDVK NQNISHLAYQ GAGFMHNHFS 1451 1500 ENSBTAP00000056439/1-1676 NSDAKTNQTS GPLPCAHDLH APAPEQSTH- --SALKLSSP CKSKSLGDLT ENSTTRP00000014027/1-1690 NSDAKKNQTP GPLSSVQDMH DPAPERSTHP PLPALKLPSP CKSKSLGDLT bmy_21139T0/1-1226 NSDAKKNQTP GPLSSVQDMH DPAPERSTHX PLPALKLPSP CKSKSLGDLT BACU000437/1-984 NSDAKKNQTP GPLSSVQDMH DPAPERSTHP PLPALKLPSP CKSKSLGDLT 1501 1550 ENSBTAP00000056439/1-1676 SEDIACNFES KYQCISKSFV TTGIRDKKGM TVKTKSLEPM DALTEQLRKL ENSTTRP00000014027/1-1690 SEDIACNFES KYQCISKSFV TTGIRDKKSV TVKTKSLEPI DALTEQLRKL bmy_21139T0/1-1226 SEDIACNFES KYQCISKSFV TTGIRDKKGX TVKTKSLEPI DALTEQLRKL BACU000437/1-984 SEDIACNFES KYQCISKSFV TTGIRDKKGV TVKTKSLEPI DALTEQLRKL 1551 1600 ENSBTAP00000056439/1-1676 VSFDQEDGCQ VLYSKQDANQ FPRALVRKLS SRSQSRVRNI ASRAKEKQEA ENSTTRP00000014027/1-1690 VSFDQEDGCQ VLYSKQDVNQ FPRALVRKLS SRSQSRVRNI ASRAKEKQEA bmy_21139T0/1-1226 VSFDQEDGCQ VLYSKQDINQ FPRALVRKLS SRSQSRVRNI ASRAKEKQEA BACU000437/1-984 VSFDQEDGCQ VLYSKQDVNQ FPRALVRKLS SRSQSRVRNI ASRAKEKQEA 1601 1650 ENSBTAP00000056439/1-1676 NRQKSVNPST VGGVVLRSKP CAPAPTGNRH STGSYIAGYL RSAKGGS-LE ENSTTRP00000014027/1-1690 NKQKSVNPSP VGGVVLRSKP CAPAPVGNRH STGSYIAGYL RSAKGACGVE bmy_21139T0/1-1226 NKQKSVNPSP VGGVVLRSKP CAPAPAGNRH STGSYIAGYL RSAKGGCGVE BACU000437/1-984 NKQKSVNPSP VGGVVLRSKP CAPAPAGNRH STGSYIAGYL RSAKGGCGVE 1651 1700 ENSBTAP00000056439/1-1676 GRGIPEGACA ALRSGHVDRF CSHHSVLQTE PSSDDKPEIY FLLRL ENSTTRP00000014027/1-1690 GRGIPEGACA ALR-GHADQF CSHHSVLQTE PSNDDKPEIY FLLRL bmy_21139T0/1-1226 GRGIPEGACA ALRSGHADQF CSHHSVLQTE PSSDDKPEIY FLLRL BACU000437/1-984 GRGIPEGACA ALRSGHADQF CSHHSVLQTE PSSDDKPEIY FLLRL