KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:33 2014 Check: 00 .. Name: ENSTTRP00000004331/1-458 Len: 522 Check: 8061 Weight: 1.00 Name: ENSBTAP00000056444/1-406 Len: 522 Check: 4995 Weight: 1.00 Name: ENSP00000365891/1-502 Len: 522 Check: 2292 Weight: 1.00 Name: bmy_16627T0/1-455 Len: 522 Check: 462 Weight: 1.00 Name: BACU008479/1-421 Len: 522 Check: 2051 Weight: 1.00 // 1 50 ENSTTRP00000004331/1-458 ---------- ---------- ---------- ---------- -------TLA ENSBTAP00000056444/1-406 --------RP GGRGGQGVQQ NIPSTLLQDH PLAAPDRIPT SPTLPSQTLA ENSP00000365891/1-502 MSGGPMGGRP GGRGAPAVQQ NIPSTLLQDH ---ENQRLFE MLGRKCLTLA bmy_16627T0/1-455 MSGGPSGGRP GGRGGPGGQQ NIPSTLLQDH ---ENQRLFE MLGRKCWTLA BACU008479/1-421 MSGGPSGGRP GGRGGPGVQE NIPSTLLQDH ---ENQRLFE MLGRKCWTLA 51 100 ENSTTRP00000004331/1-458 TAVVQLYLAL PRGAEHWTKE HCGAVCFVKD NPQKSYFIRL YGLQXXXXXX ENSBTAP00000056444/1-406 TAVVQLYLAL PPGAEHWTKG HCGAVCFVKD NPKKSYFIRL YGLQAGRLLW ENSP00000365891/1-502 TAVVQLYLAL PPGAEHWTKE HCGAVCFVKD NPQKSYFIRL YGLQAGRLLW bmy_16627T0/1-455 TAVVQLYLAL PRGAEHWTKE HCGAVCFVKD NPQKSYFIRL YGLQAGRLLW BACU008479/1-421 TAVVQLYLAL PRGAEHWTKE HCGAVCFVKD NPQKSYFIRL YGLQAGRLLW 101 150 ENSTTRP00000004331/1-458 XXXXXXXXXX XXXXXXXXXX XXXDCQAGLN FADEGEAQAF RTLVQEKIQK ENSBTAP00000056444/1-406 EQELYSQLVY SAPTPFFHTF AGDDCQAGLN FANEGEAEAF RNLVQEKIQK ENSP00000365891/1-502 EQELYSQLVY STPTPFFHTF AGDDCQAGLN FADEDEAQAF RALVQEKIQK bmy_16627T0/1-455 EQELYSQLVY STPTPFFHTF AGDDCQAGLN FADEGEAQAF RTLVQEKIQK BACU008479/1-421 EQELYSQLVY STPTPFFHTF AGDDCQAGLN FADEGEARAF RTLVQEKIQK 151 200 ENSTTRP00000004331/1-458 RNQRQSGDRR QLPPPPVPAN EERRGGLPPL PPHPGGDQGG PSSGSLSLGL ENSBTAP00000056444/1-406 RNQRQSGGKK AL-------G KERRGGLPPL PPHPGGDQG- --VFPVSLGL ENSP00000365891/1-502 RNQRQSGDRR QLPPPPTPAN EERRGGLPPL PLHPGGDQGG PPVGPLSLGL bmy_16627T0/1-455 RNQRQGGDRR QLPPPPVPAN E--------- ---------G PAAGSLSLGL BACU008479/1-421 RNQRQGGDRR QLPPPPVPAN E--------- ---------G PAAGSLSLGL 201 250 ENSTTRP00000004331/1-458 VTVDIHNPYI TNSRYRGLPA PGPIPGDNKR SWNKKISKAD IGAPSGFXXX ENSBTAP00000056444/1-406 VTVDIQNPDI TNSRYRSLPA PGPSPSDKKR SGKKKISKSD IGAPSGFKHV ENSP00000365891/1-502 ATVDIQNPDI TSSRYRGLPA PGPSPADKKR SGKKKISKAD IGAPSGFKHV bmy_16627T0/1-455 VTVDIQNPDI TNSRYRGLPA PGPGPSDKKR SGKKKISKAD IGAPSGFKHV BACU008479/1-421 VTVDIQNPDI TNSRYRGLPA PGPGPGDKKR SGKKKISKAD IGAPSGFKHV 251 300 ENSTTRP00000004331/1-458 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000056444/1-406 SHVGWDPQNG F-----DSDL GVGISCSSDS GSAIPNNNNS NNSRNSIHWR ENSP00000365891/1-502 SHVGWDPQNG FDVNNLDPDL RSLFSRAGIS EAQLTDAETS KLIYDFIEDQ bmy_16627T0/1-455 SHVGWDPQNG FDVNNLDPDL RSLFSRAGIS EAQLTDAETS KFIYDFIENQ BACU008479/1-421 SHVVWDPQNG FDVNNLDPDL RSLFSRAGIS EAQLTDAETS KFIYDFIENQ 301 350 ENSTTRP00000004331/1-458 XXXXXXXXXX XXXXXXXXXX XXX------- -------XXX XXXXXXXXXX ENSBTAP00000056444/1-406 GGWE------ ---------- ---------- -------RKG AWGPGRSAP- ENSP00000365891/1-502 GGLEAVRQEM RRQEPLPPPP PPSRGGNQLP RPPIVGGNKG RSGPLPPVPL bmy_16627T0/1-455 GGLEAVRKEM RRQA------ ---------- ----VGSNKG RSGPLPPVP- BACU008479/1-421 GGLEAVRKEM RRQ------- ---------- ---------- ---------- 351 400 ENSTTRP00000004331/1-458 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000056444/1-406 ---------- -RPPPGAGPP TSPREGGVGG GIGPSPELGG GGGGGGGGGG ENSP00000365891/1-502 GIAPPPPTPR GPPPPGRGGP PPPPPPATGR SGPLPPP--- ---PPGAGGP bmy_16627T0/1-455 --------PR GPPPPGRGGP PPPPPPATGR SVPPPPP--- ---PPGAGGP BACU008479/1-421 ---------- ---------- ------ATGR SVPPPPP--- ---PPGAGGP 401 450 ENSTTRP00000004331/1-458 XXXXXXXXXX XXXXXXXXXX PSSGVGPIAP PPP---PPLG LVGGLAPGGG ENSBTAP00000056444/1-406 GMGGPPPAPG GGGGGGTERP VAGGGGGGGP PRPGGGGPRG VGGGGAPPEG ENSP00000365891/1-502 PMPPPPPPP- -------PPP PSSGNGPAPP PLP---PALV PAGGLAPGGG bmy_16627T0/1-455 PLPPPPPPP- -------PPP PSSGDGPIAP PPP---PSLG LVGGLAPGGG BACU008479/1-421 PLPPPPPPP- -------PPP PSSGDGPIAP PPP---PSLG LVGGLAPGGG 451 500 ENSTTRP00000004331/1-458 RGALLDQIRQ GIQLNKTPGA PESSALQPPP QSSEGLVGAL MHVMQKRSRA ENSBTAP00000056444/1-406 TGG------- --------RG PERPLLLPTV GGRGGWFPP- ---------- ENSP00000365891/1-502 RGALLDQIRQ GIQLNKTPGA PESSALQPPP QSSEGLVGAL MHVMQKRSRA bmy_16627T0/1-455 RGALLDQIRQ GIQLNKTPGA PESSALQPPP QSSEGLVGAL MHVMQKRSRA BACU008479/1-421 RGALLDQIRQ GIQLNKTPGA PESSALQPPP QSSEGLVGAL MHVMQKRSRA 501 550 ENSTTRP00000004331/1-458 IHSSDEGEDQ AGDDDEDDEW DD ENSBTAP00000056444/1-406 ---------- ---------- -- ENSP00000365891/1-502 IHSSDEGEDQ AGDEDEDDEW DD bmy_16627T0/1-455 IHSSDEGEDQ AGDDDEDDEW DD BACU008479/1-421 SHSSDEGEDQ AGDDDEDDEW DD