KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:35 2014 Check: 00 .. Name: ENSP00000472305/1-568 Len: 639 Check: 677 Weight: 1.00 Name: ENSBTAP00000056465/1-560 Len: 639 Check: 1821 Weight: 1.00 Name: BACU002549/1-619 Len: 639 Check: 8100 Weight: 1.00 Name: bmy_17831T0/1-601 Len: 639 Check: 1550 Weight: 1.00 Name: ENSTTRP00000003629/1-557 Len: 639 Check: 9601 Weight: 1.00 // 1 50 ENSP00000472305/1-568 ---------- ---------- ---------- -------MRR SVLVRNPGHK ENSBTAP00000056465/1-560 ---------- ---------- ---------- -------MRR SVLVRNPGHK BACU002549/1-619 MERGAEPWSW VLETSSAGSH DFYPDPAPEA ASTSTLGMRR SVLVRNPGHK bmy_17831T0/1-601 MERGAEPWSW VLETSSAGSH DFYPDPAPEA ASTSTPGMRR SVLVRNPGHK ENSTTRP00000003629/1-557 ---------- ---------- ---------- -------MRR SVLVRNPGHK 51 100 ENSP00000472305/1-568 GLRPVYEELD SDSEDLDPNP EDLDPVSEDP EPDPEDLNTV PEDVDPSYED ENSBTAP00000056465/1-560 GRRPDYEELD SDSEDLDPDP EELDPASEKQ EPEPEDLHTV SEDVDPSYED BACU002549/1-619 GPRPNYEELD SDSEDLDPKR EELDPVSENP EPEPEDLNTV SEDVDPSYED bmy_17831T0/1-601 GPRPNYEELD SDSEDLDPKR EELDPVSENP EPEPEDLNTV SEDVDPSYED ENSTTRP00000003629/1-557 GPRPNYEELD SDSEDLDPKS EELDPVSENP EPEPEDLNTV SEDVDPSYEE 101 150 ENSP00000472305/1-568 LEPVSEDLDP DAEAPG---- ---SEPQDPD PMSSSFDLDP DVIGPVPLIL ENSBTAP00000056465/1-560 LEPVSEALDA EADAPGSISG IRDSDPQDLD PLSSSFD-DP DVIGPVPLIL BACU002549/1-619 LEPVSEDLDP DVEAPSSILG IRDSDPQDLD PMSSSFD-DP DVIGPVPLVL bmy_17831T0/1-601 LEPVSEDLDP DVEAPSSILG IRDSDPQDLD PMSSNFD-DP DVIGPVPLVL ENSTTRP00000003629/1-557 LEPVSEDLDP DVEAPD---- ---SDPQDLD PMSSSFD-DT DVIGPVPLVL 151 200 ENSP00000472305/1-568 DPNSDTLSPG D-PKVDPISS GLTATPQVLA TSPAVLPAPA SPPRPFSCPD ENSBTAP00000056465/1-560 DPNSDTLSPT ASPDLDSLSS DLPATPEVLT AAPAVLPAPA SPPRPFSCPD BACU002549/1-619 DPNSDTLSPA ATPDLDPLSS DLTATPEVLA AGPAVLPAPA SPPRPFSCPD bmy_17831T0/1-601 DPNSDTLSPA ATPDLDPLSS DLTATPEVLT AGPAVLPAPA SPPRPFSCPD ENSTTRP00000003629/1-557 DPNSDTLSPA ATPDLDPLSS DLTATPEVLA AGPAVLPAPA SPPRPFSCPD 201 250 ENSP00000472305/1-568 CGRAFRRSSG LSQHRRTHSG EKPYRCPDC- ---------- ---------- ENSBTAP00000056465/1-560 CGRAFRRSSG LSQHRRTHSG EKPYRCPDC- ---------- ---------- BACU002549/1-619 CGRAFRRSSG LTQHRXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17831T0/1-601 CGRAFRRSSG LSQHRRTHSG EKPYRCPDC- ---------- ---------- ENSTTRP00000003629/1-557 CGRAFRRSSG LSQHRRTHSG EKPYRCPDC- ---------- ---------- 251 300 ENSP00000472305/1-568 -----GKSFS HGATLAQHRG IHTGARPYQC AACGKAFGWR STLLKHRSSH ENSBTAP00000056465/1-560 -----GKSFS HGATLAQHRG IHTGARPYQC AACGKAFGWR STLLKHRSSH BACU002549/1-619 XXXAGGKWFS HGATLAQPRG IHTGARPYQC AACGKAFGWR STLLKHRSSH bmy_17831T0/1-601 -----GKSFS HGATLAQHRG IHTGARPYQC AACGKAFGWR STLLKHRSSH ENSTTRP00000003629/1-557 -----GKSFS HGATLAQHRG IHTGARPYQC AACGKAFGWR STLLKHRSSH 301 350 ENSP00000472305/1-568 SGEKPHHCPV CGKAFGHGSL LAQHLRTHGG PRPHKCPVCA KGFGQGSALL ENSBTAP00000056465/1-560 SGEKPHHCPV CGKAFGHGSL LAQHLRTHGG PRPHKCPVCA KGFGQGSALL BACU002549/1-619 SGEKPHHCPV CGKAFGHGSL LAQHLRTHGG PRPHKCPVCA KGFGQGSALL bmy_17831T0/1-601 SGEKPHHCPV CGKAFGHGSL LAQHLRTHGG PRPHKCPVCA KGFGQGSALL ENSTTRP00000003629/1-557 SGEKPHHCPV CGKAFGHGSL LAQHLRTHGG PRPHKCPVCA KGFGQGSALL 351 400 ENSP00000472305/1-568 KHLRTHTGER PYPCPQCGKA FGQSSALLQH QRTHTAERPY RCPHCGKAFG ENSBTAP00000056465/1-560 KHLRTHTGER PYPCPQCGKA FGQSSALLQH QRTHTAERPY RCPHCGKAFG BACU002549/1-619 KHLRTHTGER PYPCPQCGKA FGQSSALLQH QRTHTAERPY RCPHCGKAFG bmy_17831T0/1-601 KHLRTHTGER PYPCPQCGKA FGQSSALLQH QRTHTAERPY RCPHCGKAFG ENSTTRP00000003629/1-557 KHLRTHTGER PYPCPQCGKA FGQSSALLQH QRTHTAERPY RCPHCGKAFG 401 450 ENSP00000472305/1-568 QSSNLQHHLR IHTGERPYAC PHCSKAFGQS SALLQHLHVH SGERPYRCQL ENSBTAP00000056465/1-560 QSSNLQHHLR THTGERPYAC PHCSKAFGQS SALLQHLHVH SGERPYRCQL BACU002549/1-619 QSSNLQHHLR IHTGERPYAC PHCSKAFGQS SALLQHLHVH SGERPYRCQL bmy_17831T0/1-601 QSSNLQHHLR IHTGERPYAC PHCSKAFGQS SALLQHLHVH SGERPYRCQL ENSTTRP00000003629/1-557 QSSNLQHHLR IHTGERPYAC PHCSKAFGQS SALLQHLHVH SGERPYRCQL 451 500 ENSP00000472305/1-568 CGKAFGQASS LTKHKRVHEG AAAAAAAAAA AAAAAAAGLG LGPGLSPASM ENSBTAP00000056465/1-560 CGKAFGQASS LTKHKRVHEG AAAAAAAAAA AA-------- -GLGLSPASM BACU002549/1-619 CGKAFGQASS LTKHKRVHEG AAAAAAAAAA ---------- -GLGLSPASM bmy_17831T0/1-601 CGKAFGQASS LTKHKRVHEG AAAAAAAAAA ---------- -GLGLSPASM ENSTTRP00000003629/1-557 CGKAFGQASS LTKHKRVHEG AAAAAAAAAA ---------- -GLGLSPASM 501 550 ENSP00000472305/1-568 MRPGQVSLLG PDAVSVLGSG LGLSPGTSSG RNPDPGSGPG TLPDPSSKPL ENSBTAP00000056465/1-560 LRPGQASLLG PDAVSV---- --LSPGPSSG LDRDPGSGLG SLPNPNLKPT BACU002549/1-619 LRPGQVSLLG PDAVSVLGSG LGLSPGPSSG LDPDPGSALG SPPNPSPKPI bmy_17831T0/1-601 LRPGQVSLLG PDAVSVLGSG LGLSPGPSSG LDPDPGSALG SPPSPSPKPI ENSTTRP00000003629/1-557 LRPGQVSLLG PDAVSVLGSG LGLSPGPSSG LDPDPGSALG SPPNPSPKPI 551 600 ENSP00000472305/1-568 PGSRSTPSPT PVESSDPKAG HDAGPDLVPS PDLDPVPSPD PDPVPSPDPN ENSBTAP00000056465/1-560 SGSGSSPSPD SALSSDPKPG HNANSDLLAS PDHRSGPSPD TDPVPSPDSN BACU002549/1-619 PGSGSTPTPD SVKSSDPEPG HNANSDLVAS PGHRSGPSPD PDPAPSPD-- bmy_17831T0/1-601 PGSGSTPTPD SVKSSDPEPG HNANSDLVAS PGHRSGPSPD PDPVPSPDPS ENSTTRP00000003629/1-557 PGSGSTPTPD SVKSSDPEPG HNANSDLVAS PDHRSGPSPD PDPVPSPDPS 601 650 ENSP00000472305/1-568 PVSCPDPCSP TRGTVSPALP TGESPEWVQE QGALLGPDG ENSBTAP00000056465/1-560 SKSHPDPGSP ICDTVSPALP TGESPRWVQE QEALLGPDG BACU002549/1-619 ------PGSP THDTVSPVLP TGESPEWVQE QGALLGPDG bmy_17831T0/1-601 SESHPDPGSP THDTVSPVLP TGESPEWVQE QGALLGPDG ENSTTRP00000003629/1-557 SESHPDPGSP THDTVGAVLP TGESPEWVQE QGALLGPDG