KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 18:28:36 2014  Check: 00 ..

 Name: ENSBTAP00000056486/1-187  Len:    228  Check:  7300  Weight:  1.00
 Name: bmy_11517T0/1-193         Len:    228  Check:  4191  Weight:  1.00
 Name: BACU012663/1-228          Len:    228  Check:  1481  Weight:  1.00
 Name: ENSTTRP00000000855/1-228  Len:    228  Check:  1481  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000056486/1-187  ---------- ---------- ---------- ---------- -HFVPNITFG 
bmy_11517T0/1-193         MASGCKIGPS ILNSDLASLG AECLRMLDSG ADYLHLDVMD GHFVPNITFG 
BACU012663/1-228          MASGCKIGPS ILNSDLASLG AECLRMLDSG ADYLHLDVMD GHFVPNITFG 
ENSTTRP00000000855/1-228  MASGCKIGPS ILNSDLASLG AECLRMLDSG ADYLHLDVMD GHFVPNITFG 


                          51                                                 100
ENSBTAP00000056486/1-187  HPVVESLRKQ LGQDPFFDMH MMVSRPEQWV KPMAVAGANQ YTFHLEATDN 
bmy_11517T0/1-193         HPVVESLRKQ LGQDPFFDMH MMVSRPEQW- ---------- ---------- 
BACU012663/1-228          HPVVESLRKQ LGQDPFFDMH MMVSRPEQWV KPMAVAGANQ YTFHLEATEN 
ENSTTRP00000000855/1-228  HPVVESLRKQ LGQDPFFDMH MMVSRPEQWV KPMAVAGANQ YTFHLEATEN 


                          101                                                150
ENSBTAP00000056486/1-187  PGALIKDIRE NGMKVGLAIK PGTSVEYLAP WANQIDMALV MTVEPGFGGQ 
bmy_11517T0/1-193         ---------- ----VGLAIK PGTTVEYLAP WANQIDMALV MTVEPGFGGQ 
BACU012663/1-228          PGALIKDIRE NGMKVGLAIK PGTTVEYLAP WANQIDMALV MTVEPGFGGQ 
ENSTTRP00000000855/1-228  PGALIKDIRE NGMKVGLAIK PGTTVEYLAP WANQIDMALV MTVEPGFGGQ 


                          151                                                200
ENSBTAP00000056486/1-187  KFMEDMMPKV HWLRTQFPSL DIEVDGGVGP DTIHKCAEAG ANMIVSGSAI 
bmy_11517T0/1-193         KFMEDMMPKV HWLRTQFPSL DIEVDGGVGP DSIHKCAEAG ANMIVSGSAI 
BACU012663/1-228          KFMEDMMPKV HWLRTQFPSL DIEVDGGVGP DTIHKCAEAG ANMIVSGSAI 
ENSTTRP00000000855/1-228  KFMEDMMPKV HWLRTQFPSL DIEVDGGVGP DTIHKCAEAG ANMIVSGSAI 


                          201                                                250
ENSBTAP00000056486/1-187  MRSEDPRSVI NLLRNVCSEA AQKRSLDR 
bmy_11517T0/1-193         MRSEDPRSVI NLLRNVCSEA AQKRSLDR 
BACU012663/1-228          MRSEDPRSVI NLLRNVCSEA AQKRSLDR 
ENSTTRP00000000855/1-228  MRSEDPRSVI NLLRNVCSEA AQKRSLDR