KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:39 2014 Check: 00 .. Name: ENSP00000347997/1-655 Len: 661 Check: 2503 Weight: 1.00 Name: ENSBTAP00000056507/1-602 Len: 661 Check: 8511 Weight: 1.00 Name: ENSTTRP00000009010/1-656 Len: 661 Check: 1974 Weight: 1.00 Name: bmy_13076T0/1-659 Len: 661 Check: 4089 Weight: 1.00 Name: BACU004508/1-661 Len: 661 Check: 1490 Weight: 1.00 // 1 50 ENSP00000347997/1-655 MAKGGEALPQ GSPAPVQDPH LIKVTVKTPK DKEDFSVTDT CTIQQLKEEI ENSBTAP00000056507/1-602 MAKSGEALPQ GSPALVQDPH LIKVTVKTPK DKEDFSVTDT CTIQQLKEEI ENSTTRP00000009010/1-656 MAKSGEALPQ GSPVLVQDPH LIKVTVKTPK DKEDFSVTDT CTIQQLKEEI bmy_13076T0/1-659 MAKSGEALPQ GSPVPVQDPH LIKVTVKTPK DKEDFSVTDT CTIQQLKEEI BACU004508/1-661 MAKSGEALPQ GSPVPVQGPP LIKVTVKTPK DKEDFSVTDT CTIQQLKEQI 51 100 ENSP00000347997/1-655 SQRFKAHPDQ LVLIFAGKIL KDPDSLAQCG VRDGLTVHLV IKRQHRAMGN ENSBTAP00000056507/1-602 SQRFKAHPDQ LILIFAGKIL KDPDSLAQCG VRDGLTVHLV IKMQRRTMGN ENSTTRP00000009010/1-656 SQRFKAHPDQ LILIFAGKIL KDPDSLAQCG VRDGLTVHLV IKMQRRTVGT bmy_13076T0/1-659 SQRFKAHPDQ LILIFAGKIL KDPDSLAQCG LRDGLSVHLV IKMQRRPVGT BACU004508/1-661 SQRFKAHPDQ LILIFAGKIL KDPDSLAQCG LRDGLSVHLV IKMQRHPVGT 101 150 ENSP00000347997/1-655 ECPAASVPTQ GPSPGSLPQP SSIYPADGPP AFSLGLLTGL SRLGLAYRGF ENSBTAP00000056507/1-602 ECPAASVPTP APSPGSLPQP SSIYPADGPP TFSLGVLTGL NGLGLTLGGF ENSTTRP00000009010/1-656 ECPAASVPIP APSLGSLPQP SSIYPADRLP TFSLGVLTGL NGLGLTSGSF bmy_13076T0/1-659 ACPAASVPTA APSPGSLPQP SSICPADRLP TFSLGVLTDL NGLGLTSGSF BACU004508/1-661 ACPAASVPTA APSPGSLPQP SSICPADRLP TSSLGVLTGL NGLGLTSGSF 151 200 ENSP00000347997/1-655 PDQPSSLMRQ HVSVPEFVTQ LIDDPFIPGL LSNTGLVRQL VLDNPHMQQL ENSBTAP00000056507/1-602 PDQPSSLVWQ HVSVPEFVAQ IIDDPFIQGL LSNTGLVRQL VLDNPRMQQL ENSTTRP00000009010/1-656 PDPPSSLMWQ DMSVPEFVAQ IIDDAFIQGL LSNTGLVRQL VLDNPHMQQL bmy_13076T0/1-659 PDQPSSLMWQ HVSVSEFVAQ IIDDPFIQGL LSNTGLVRQL VLDNPHMQQL BACU004508/1-661 PDQPSSLVWQ HVSVSEFVSQ ITDDPFIQGL LSNAGLVRQL VLDNPHMQQL 201 250 ENSP00000347997/1-655 IQHNPEIGHI LNNPEIMRQT LEFLRNPAMM QEMIRSQDRV LSNLESIPGG ENSBTAP00000056507/1-602 IQHNPEIGHI LNNPEIMRQT LEFLRNPAMM QEMMRSQDRA LSNLESIPGG ENSTTRP00000009010/1-656 IQHNPEIGHI LNNPEIMRQT MEFLCKPAMM QEMMRSQDRA LRNLESIPGG bmy_13076T0/1-659 IQRNPEIGHI LNNPEIMRQT MEFLCNPAMM QEMMRSQDRV LSNLESIPGG BACU004508/1-661 IQHNPEIGHI LNNPEIMRQT MEFLCNPAMM QEMMRSQDRA LSNLESIPGG 251 300 ENSP00000347997/1-655 YNVLCTMYTD IMDPMLNAVQ EQFGGNPFAT ATTDNATTTT SQPSRMENCD ENSBTAP00000056507/1-602 YNVLRTMYTD IMDPMLNAVQ EQFGGNPFAT -TNANATSSS SQPSRMENCD ENSTTRP00000009010/1-656 YNVLRTMYTD IMHPMLNAVQ EQFGGNPFAT TTTANATTSS CQPSRMENCD bmy_13076T0/1-659 YNVLRTMYTD IMHPMLSAVQ EQFGGNPFAT TPTANATTSS SKPSRMENCD BACU004508/1-661 YNVLRTMYTD VMHPMLNAVQ EQFGGNPFAT TTTANATTSS SKPSRMENCD 301 350 ENSP00000347997/1-655 PLPNPWTSTH GGSGSRQGRQ DGDQDAPDIR NRFPNFLGII RLYDYLQQLH ENSBTAP00000056507/1-602 PLPNPWTSTY AGSAGRRGRR LGDQDISELR NRVPNILGNI GLYDYLQQLH ENSTTRP00000009010/1-656 PLPNPWASTF AGSAGRRGRR PGDQDVSELR NGVCNILGNM RLYDYLQQLH bmy_13076T0/1-659 PLPNPWASTF AGSAGRRGRR PGDQDVSELR NRVSNILGNI RLYDYLQQLH BACU004508/1-661 PLPNPWASTF AGSAGRRGRR PGDQDVSELR NRVSNILGNI RLYDYLQQLH 351 400 ENSP00000347997/1-655 ENPQSLGTYL QGTASALSQS QE--PP-PSV NRVPPSSPSS QEPGSGQPLP ENSBTAP00000056507/1-602 ETPQSLGSYL QGMASTLSPS QE-QPPPPPG NQVPPASPSS QKPESGQALP ENSTTRP00000009010/1-656 ERPLSLRTYL QGIASTLSPS QE--PPSPPG SQVPPTSPSS QELESGRPLP bmy_13076T0/1-659 ESPLSLGTYL QGIASTLSPS QE--PPPRPG SQVPPTSPSS QELESGQPLP BACU004508/1-661 ESPLSLGTYL QGIASTLSPS QEPPPPPPPG SQVPPTSPSS QELESGQPLP 401 450 ENSP00000347997/1-655 EESVAIKGRS SCPAFLRYPT ENSTGQGGDQ DGAGKSSTGH STNLPDLVSG ENSBTAP00000056507/1-602 KESVAIKGKP SCPALLRYPT ESSARKDGGQ DGAGNGSTGH SIHMPDLVSG ENSTTRP00000009010/1-656 RESVAIKGKP SCPAFLRYPT ESSARKAGSR DGAGNGSTAH STNMPDLVSR bmy_13076T0/1-659 RESVAIKGKP SCPSFLRYPT ESSARKDGSQ DGAGNGSTAH STNKPDLVSR BACU004508/1-661 KESVAIKGKP SCPSFLRYPT ESSARRDGSQ GGSGNGSTAH STNKPDLVSR 451 500 ENSP00000347997/1-655 LGDSANRVPF APLSFSPTAA IPGIPEPPWL PSPAYPRSLR PDGMNPAPQL ENSBTAP00000056507/1-602 LGPAANRTQI VPSPPLPTAA AAGTPERVWP PPLVYPRSLR PTSMNQAPQL ENSTTRP00000009010/1-656 LECAADKAPF VPSPPSPTAV TAGTPEHVWL PPPAYPRPLR PARMNEAPQL bmy_13076T0/1-659 LERAANKVPF VPSPPSPTAA TAGTPEHVWL PPPAYPRSLR PAGMNQAPQL BACU004508/1-661 LERAANKVPF VPSPPSPTAA TAGTPEHVWL PPPAYPRSLR PAGMNQAPQL 501 550 ENSP00000347997/1-655 QDEIQPQLPL LMHLQAAMAN PRALQALRQI EQGLQVLATE APRLLLWFMP ENSBTAP00000056507/1-602 QDEMHWQLPL LLHLQAAMAN PRAMHALLQI EQGLQILATE APRLFLWFMP ENSTTRP00000009010/1-656 QDEMRWQLPL LLHLQAAMAN PRAMHALLQI EQGLQILATE APRLLLLFMP bmy_13076T0/1-659 QDEMRWQLPL LLHLQAAMAN PRAMHALLQI EQGLQILAAE APRLLLLFMP BACU004508/1-661 QDEMRWQLPL LLHLQAAMAN PRAMHALLQI EQGLQILAIE APRLLLLFMP 551 600 ENSP00000347997/1-655 CLAGTGSVAG GIESREDPLM SEDPLPNPPP EVFPALDSAE LGFLSPPFLH ENSBTAP00000056507/1-602 CLTRLGSMAG DTEPRESPLV PEDPLPPPAP EVPSAQGSME LGLHSTPSSR ENSTTRP00000009010/1-656 CLAGLGSTAG STEPREGALM PADPPLDPGP EVPSAQGSVE LGLHSMPFLQ bmy_13076T0/1-659 CLAGLGSMAG STEPREGALM PADPPLVPAP EVPSAQGSVD LGLRSMPFLQ BACU004508/1-661 CLAGLGSMTG STEPREGALM PADPPRAPAP EVPSARGSAE LGLRSMPSLQ 601 650 ENSP00000347997/1-655 MLQDLVSTNP QQLQPEAHFQ VQLEQLRSMG FLNREANLQA LIATGGDVDA ENSBTAP00000056507/1-602 CCKP------ ---------- ---------- ---------- ---------- ENSTTRP00000009010/1-656 MLQALAGANP LQLQPETHFR VQLEQLRAMG FLNLEANLQA LIATGGDVDA bmy_13076T0/1-659 MLQALAGANP QQLQPETHFR XQLEQLRTMG FLNPEANLQA LIATGGDVDA BACU004508/1-661 MLQALAGANP QQLQPETHFR VQLEQLRAMG FLNPEANLQA LIATGGDVDA 651 700 ENSP00000347997/1-655 AVEKLRQS-- - ENSBTAP00000056507/1-602 ---------- - ENSTTRP00000009010/1-656 AVKKLRQL-- - bmy_13076T0/1-659 AVKKLRQLKE P BACU004508/1-661 AVKKLRQLKE P