KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:39 2014 Check: 00 .. Name: ENSP00000257895/1-318 Len: 318 Check: 5822 Weight: 1.00 Name: ENSBTAP00000056512/1-318 Len: 318 Check: 5490 Weight: 1.00 Name: ENSTTRP00000009195/1-224 Len: 318 Check: 7959 Weight: 1.00 Name: bmy_03952T0/1-246 Len: 318 Check: 6950 Weight: 1.00 Name: BACU008113/1-246 Len: 318 Check: 7357 Weight: 1.00 // 1 50 ENSP00000257895/1-318 MWLPLLLGAL LWAVLWLLRD RQSLPASNAF VFITGCDSGF GRLLALQLDQ ENSBTAP00000056512/1-318 MWLPLLLGVL LWAALWLLRD RQCLPASDAF IFITGCDSGF GRLLALRLDQ ENSTTRP00000009195/1-224 MWLPLLLGVS LWAALWLLRD RQSLPASDAF VFVTGCDSGF GRLLALRLDQ bmy_03952T0/1-246 MWLPLLLGVS LWAALWLLRD RQSLPASDAF VFVTGCDSGF GRLLALRLDQ BACU008113/1-246 MWLPLLLGVS LWAALWLLRD RQSLPASDAF VFVTGCDSGF GRLLALRLDQ 51 100 ENSP00000257895/1-318 RGFRVLASCL TPSGAEDLQR VASSRLHTTL LDITDPQSVQ QAAKWVEMHV ENSBTAP00000056512/1-318 RGFRVLASCL TPSGAEDLQR VASSRLHTTL LDVTDPQSIR QAVKWVETHV ENSTTRP00000009195/1-224 RGFRVLASCL TPSGAEDLER VASSRLHTTL LDVTDPQSVR QAAKWVETHV bmy_03952T0/1-246 RGFRVLASCL TPSGAEDLER VASSRLHTTL LDVTDPQSVR QAAKWVETHV BACU008113/1-246 RGFRVLASCL TPSGAEDLER VASSRLHTTL LDVTDPQSVR QAAKWVETHV 101 150 ENSP00000257895/1-318 KEAGLFGLVN NAGVAGIIGP TPWLTRDDFQ RVLNVNTMGP IGVTLALLPL ENSBTAP00000056512/1-318 GEAGLFGLVN NAGVAGIIGP TPWQTREDFQ RVLNVNTLGP IGVTLALLPL ENSTTRP00000009195/1-224 GEAGLFGLVN NAGTAGIIGP TPWQTQEDFQ RVLNVNTLGP IGVTLALLPL bmy_03952T0/1-246 GEAGLFGLVN NAGMAGIIGP TPWQTQEDFQ RVLNVNTLGP IGVTLALLPL BACU008113/1-246 GEAGLFGLVN NAGTAGIIGP TPWQTQEDFQ RVLNVNTLGP IGVTLALLPL 151 200 ENSP00000257895/1-318 LQQARGRVIN ITSVLGRLAA NGGGYCVSKF GLEAFSDSLR RDVAHFGIRV ENSBTAP00000056512/1-318 LLQARGRVIN ITSVLGRLAA NGGGYCVSKF GLEAFSDSLR RDVAPFGVRV ENSTTRP00000009195/1-224 LRQAQGRVIN ITSVLGRLAA NGGGYCVSKF GLEAFSDSLR RDVAPFGVRV bmy_03952T0/1-246 LRQAQGRVIN ITSVLGRLAA SGGGYCVSKF GLEAFSDSLR RDVAPFGVRV BACU008113/1-246 LRQAQGRVIN ITSVLGRLAA SGGGYCVSKF GLEAFSDSLR RDVAPFGVRV 201 250 ENSP00000257895/1-318 SIVEPGFFRT PVTNLESLEK TLQACWARLP PATQAHYGGA FLTKYLKMQQ ENSBTAP00000056512/1-318 SIVEPGFFRT PVTNLETLED TLQACWARLP PATQALYGEA FLTKYLRVQQ ENSTTRP00000009195/1-224 SIVEPGFFRT TVTNLESLED SLQA------ ---------- ---------- bmy_03952T0/1-246 SIVEPGFFRT PVTNLESLED NLQACWARLP PATQALYGET FLTK------ BACU008113/1-246 SIVEPGFFRT PVTNLESLED NLQACWARLT PATQALYGET FLTK------ 251 300 ENSP00000257895/1-318 RIMNLICDPD LTKVSRCLEH ALTARHPRTR YSPGWDAKLL WLPASYLPAS ENSBTAP00000056512/1-318 RIMNMICDPD LAKVSRCLEH ALTARHPRTR YSPGWDAKLL WLPASYLPAR ENSTTRP00000009195/1-224 ---------- ---------- ---------- ---------- ---------- bmy_03952T0/1-246 ------CE-- ---------- ---------- ---------- ---------- BACU008113/1-246 ------CE-- ---------- ---------- ---------- ---------- 301 350 ENSP00000257895/1-318 LVDAVLTWVL PKPAQAVY ENSBTAP00000056512/1-318 LVDAVLAWVL PKPAQTVY ENSTTRP00000009195/1-224 ---------- -------- bmy_03952T0/1-246 ---------- -------- BACU008113/1-246 ---------- --------