KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:42 2014 Check: 00 .. Name: ENSTTRP00000003507/1-836 Len: 902 Check: 4681 Weight: 1.00 Name: ENSP00000349351/1-855 Len: 902 Check: 7101 Weight: 1.00 Name: ENSBTAP00000056548/1-836 Len: 902 Check: 3497 Weight: 1.00 Name: bmy_04151T0/1-852 Len: 902 Check: 7253 Weight: 1.00 Name: BACU009578/1-719 Len: 902 Check: 3764 Weight: 1.00 // 1 50 ENSTTRP00000003507/1-836 MSAPSEEEEY ARLVMEAQPE WLRAEVKRLS HELAETTREK IQAAEYGLAV ENSP00000349351/1-855 MSAPSEEEEY ARLVMEAQPE WLRAEVKRLS HELAETTREK IQAAEYGLAV ENSBTAP00000056548/1-836 MSAPSEEEEY ARLVMEAQPE WLRAEVKRLS HELAETTREK IQAAEYGLAV bmy_04151T0/1-852 MSAPSEEEEY ARLVMEAQPE WLRAEVKRLS HELAETTREK IQAAEYGLAV BACU009578/1-719 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000003507/1-836 LEEKHQLKLQ FEELEVDYEA IRGEMEQLKE ---------- ---------- ENSP00000349351/1-855 LEEKHQLKLQ FEELEVDYEA IRSEMEQLKE ---------- ---------- ENSBTAP00000056548/1-836 LEEKHQLKLQ FEELEVDYEA IRGEMEQLKE ---------- ---------- bmy_04151T0/1-852 LEEKHQLKLQ FEELEVDYEA IRGEMEQLKE LQFEKDRCAA LFKTVLACVA BACU009578/1-719 ---------- ---------- --------ME ---------- ---------- 101 150 ENSTTRP00000003507/1-836 ---------- -------AFG QAHTNHKKVA ADGESREESL IQESASXXXX ENSP00000349351/1-855 ---------- -------AFG QAHTNHKKVA ADGESREESL IQESASKEQY ENSBTAP00000056548/1-836 ---------- -------AFG QAHTNHKKVA ADGESREESL IQESASKEQY bmy_04151T0/1-852 QAGLPTVSLS RASHLLQAFG QAHTNHKKVA ADGESREESL IQESASKEQY BACU009578/1-719 ---------- -------AFG QAHTNHKKVA ADGESREESL IQESASKEQY 151 200 ENSTTRP00000003507/1-836 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXIN QNVEIQRGRL ENSP00000349351/1-855 YVRKVLELQT ELKQLRNVLT NTQSENERLA SVAQELKEIN QNVEIQRGRL ENSBTAP00000056548/1-836 YVRKVLELQT ELKQLRNVLA NTQSENERLA SVAQELKEIN QNVEIQRGRL bmy_04151T0/1-852 YVRKVLELQT ELKQLRNVLA NTQSENERLA SVAQELKEIN QNVEIQRGRL BACU009578/1-719 YVRKVLELQT ELKQLRNVLA NTQSENERLA SVAQELKEIN QNVEIQRGRL 201 250 ENSTTRP00000003507/1-836 RDDIKEYKFR EARLLQDYSE LEEENISLQK QVSVLRQN-- --------QV ENSP00000349351/1-855 RDDIKEYKFR EARLLQDYSE LEEENISLQK QVSVLRQN-- --------QV ENSBTAP00000056548/1-836 RDDIKEYKFR EARLLQDYSE LEEENISLQK QVSVLRQN-- --------QV bmy_04151T0/1-852 RDDIKEYKFR ETRLLQDYSE LEEENISLQK QVSVLRQNQA SIWAGQVGQV BACU009578/1-719 RDDIKEYKFR EARLLQDYSE LEEENISLQK ---------- --------QV 251 300 ENSTTRP00000003507/1-836 EFEGLKHEIK RLEEETEYLN SQLEDAIRLK EISERQLEEA LETLKTEREQ ENSP00000349351/1-855 EFEGLKHEIK RLEEETEYLN SQLEDAIRLK EISERQLEEA LETLKTEREQ ENSBTAP00000056548/1-836 EFEGLKHEIK RLEEETEYLN SQLEDAIRLK EISERQLEEA LETLKTEREQ bmy_04151T0/1-852 EFEGLKHEIK RLEEETEYLN SQLEDAIRLK EISERQLEEA LETLKTEREQ BACU009578/1-719 EFEGLKHEIK RLEEETEYLN SQLEDAIRLK EISERQLEEA LETLKTEREQ 301 350 ENSTTRP00000003507/1-836 KNSLRKELSH YMSINDSLYT SHLHVSLDGL KLGD------ -DAEALANGF ENSP00000349351/1-855 KNSLRKELSH YMSINDSFYT SHLHVSLDGL KFSDDAAEPN NDAEALVNGF ENSBTAP00000056548/1-836 KNSLRKELSH YMSINDSLYT SHLHVSLDGL KLGD------ -DAEALANGF bmy_04151T0/1-852 KNSLRKELSH YMSINDSLYT SHLHVSLDGL KLGD------ -DAEALANGF BACU009578/1-719 KNSLRKELSH YMSINDSLYT SHLHVSLDGL KLGD------ -DAEALANGF 351 400 ENSTTRP00000003507/1-836 EHGGLAKLPL DNKTSTPTKD GLAPPSPSLV SDLLSELNIS EIQKLKQQLM ENSP00000349351/1-855 EHGGLAKLPL DNKTSTPKKE GLAPPSPSLV SDLLSELNIS EIQKLKQQLM ENSBTAP00000056548/1-836 EHGGLGKVPL DNKTSTPTKD GLTPPPPSLV SDLLSELNIS EIQKLKQQLM bmy_04151T0/1-852 EHGGLAKLPL DNKTSTPTKD GLAPPSPSLV SDLLSELNIS EIQKLKQQLM BACU009578/1-719 EHGGLAKLPL DNKTSTPTKD GLAPPSPSLV SDLLSELNIS EIQKLKQQLM 401 450 ENSTTRP00000003507/1-836 QMEREKVGLL ATLQDTQKQL EQARGALSEQ HEEVSRLTEN LSALRRLQAS ENSP00000349351/1-855 QMEREKAGLL ATLQDTQKQL EHTRGSLSEQ QEKVTRLTEN LSALRRLQAS ENSBTAP00000056548/1-836 QVEREKVGLL ATLQDTQKQL EQARGALSEQ HAEVSRLTEN LSALRRLQAS bmy_04151T0/1-852 QMEREKVGLL ATLQDTQKQL EQARGALSEQ QEEVSRLTEN LSALRRLQAS BACU009578/1-719 QMEREKVGLL ATLQDTQKQL EQARGALSEQ QEEVSRLTEN LSALRRLQAS 451 500 ENSTTRP00000003507/1-836 KERRTALDSE KERDSHEDGD YYEVDINGPE ILACKYRVAL AEAGELREQL ENSP00000349351/1-855 KERQTALDNE KDRDSHEDGD YYEVDINGPE ILACKYHVAV AEAGELREQL ENSBTAP00000056548/1-836 KERRTALDSE KERDSHEDGD YYEVDINGPE ILACKYRVAV AEAGDLREQL bmy_04151T0/1-852 KERRTALDSE KERDSHEDGD YYEVDINGPE ILACKYRVAL AEAGELREQL BACU009578/1-719 KERRTALDSE KERDSHEDGD YYEVDINGPE ILACKYRVAL AEAGELREQL 501 550 ENSTTRP00000003507/1-836 KVLRSAHEAS EAQHTEEKGQ HEAESQALTE KVSLLEKASR QDRELLSRLQ ENSP00000349351/1-855 KALRSTHEAR EAQHAEEKGR YEAEGQALTE KVSLLEKASR QDRELLARLE ENSBTAP00000056548/1-836 KALRSAHEAS EAQHAEEKGR HEAESQALTE KVSLLEKASC QDRELLARLQ bmy_04151T0/1-852 KALRSAHEAS EAQHTEEKGR HEAESQALTE TVSLLEKASR QDRELLSRLQ BACU009578/1-719 KALRSAHEAS EAQHTEEKGR HEAESQALTE KVSLLEKASR QDRELLSRLQ 551 600 ENSTTRP00000003507/1-836 MELKKVSDVA GETQGSLSVA QDELVTFSEE LANLYHHVCM CNNETPTRVV ENSP00000349351/1-855 KELKKVSDVA GETQGSLSVA QDELVTFSEE LANLYHHVCM CNNETPNRVM ENSBTAP00000056548/1-836 TELKKVSDVA GETQGSLSVA QDELVTFSEE LANLYHHVCM CNNETPTRVV bmy_04151T0/1-852 MELKKVSDVA GETQGSLSVA QDELVTFSEE LANLYHHVCM CNNETPTRVV BACU009578/1-719 MELKKVSDVA GETQGSLSVA QDELVTFSEE LANLYHHVCM CNNETPTRVV 601 650 ENSTTRP00000003507/1-836 LDYYREGPAG A------GSC SPETRGRRSP VL-PKG---P PA--SEGRAR ENSP00000349351/1-855 LDYYREGQGG AGRTSPGGRT SPEARGRRSP ILLPKGLLAP EAGRADGGTG ENSBTAP00000056548/1-836 LDYYREGQAG T------GSC SPETRERRSP VL-PKG---P PP--AEGRAR bmy_04151T0/1-852 LDYYREGPAG A------GSC SPEARGRRSP VL-PKG---P PA--AEGRAR BACU009578/1-719 LDYYREGPAG A------GSC SPEARGRRSP VL-PKG---P PA--AEGRAR 651 700 ENSTTRP00000003507/1-836 DSSPSPGSSL PSPLSDPRRE PMNIYNLIAI IRDQIRHLQA AVDRTTELSR ENSP00000349351/1-855 DSSPSPGSSL PSPLSDPRRE PMNIYNLIAI IRDQIKHLQA AVDRTTELSR ENSBTAP00000056548/1-836 DSSPSPGSSL PSPLSDPRRE PMNIYNLIAI IRDQIRHLQA AVDRTTELSR bmy_04151T0/1-852 DSSPSPGSSL PSPLSDPRRE PMNIYNLIAI IRDQIRHLQA AVDRTTELSR BACU009578/1-719 DSSPSPGSSL PSPLSDPRRE PMNIYNLIAI IRDQIRHLQA AVDRTTELSR 701 750 ENSTTRP00000003507/1-836 QRLASQELGP AADKDREALM EEILKLKSLL STKREQITTL RTVLKANKQT ENSP00000349351/1-855 QRIASQELGP AVDKDKEALM EEILKLKSLL STKREQITTL RTVLKANKQT ENSBTAP00000056548/1-836 QRLASQELGP AADKDREALM EEILKLKSLL STKREQITTL RMVLKANKQT bmy_04151T0/1-852 QRLASQELGP AADKDREALM EEILKLKSLL STKREQITTL RTVLKANKQT BACU009578/1-719 QRLTSQELGP AGDRDREALM EEILKLKSLL STKREQITTL RTVLKANKQT 751 800 ENSTTRP00000003507/1-836 AEVALANLKS KYENEKAMVT ETMMKLRNEL KALKEDAATF SSLRAMFATR ENSP00000349351/1-855 AEVALANLKS KYENEKAMVT ETMMKLRNEL KALKEDAATF SSLRAMFATR ENSBTAP00000056548/1-836 AEVALANLKS KYENEKAMVT ETMMKLRNEL KTLKEDAATF SSLRAMFATR bmy_04151T0/1-852 AEVALANLKS KYENEKAMVT ETMMKLRNEL KALKEDAATF SSLRAMFATR BACU009578/1-719 AEVALANLKS KYENEKAMVT ETMMKLRNEL KALKEDAATF SSLRAMFATR 801 850 ENSTTRP00000003507/1-836 CDEYITQLDE MQRQLAAAED EKKTLNSLLR MAIQQKLALT QRLELLELDH ENSP00000349351/1-855 CDEYITQLDE MQRQLAAAED EKKTLNSLLR MAIQQKLALT QRLELLELDH ENSBTAP00000056548/1-836 CDEYITQLDE MQRQLAAAED EKKTLNSLLR MAIQQKLALT QRLELLELDH bmy_04151T0/1-852 CDEYITQLDE MQRQLAAAED EKKTLNSLLR MAIQQKLALT QRLELLELDH BACU009578/1-719 CDEYITQLDE MQRQLAAAED EKKTLNSLLR MAIQQKLALT QRLELLELDH 851 900 ENSTTRP00000003507/1-836 EQTRRSRAKA TPKAKPGTPS VSHTCACASD RAEGAGLAAQ VLCGEKYNVY ENSP00000349351/1-855 EQTRRGRAKA APKTKPATPS VSHTCACASD RAEGTGLANQ VFCSEKHSIY ENSBTAP00000056548/1-836 EQTRRGRAKA TSKAKPGPPS VSHTCACASD RAEGAGLAAQ VLCGEKYNIY bmy_04151T0/1-852 EQTRRSRAKA TPKAKPGTPS L--------- ---------- ---------- BACU009578/1-719 EQTRRSRAKA TPKAKPGTPS L--------- ---------- ---------- 901 950 ENSTTRP00000003507/1-836 CD ENSP00000349351/1-855 CD ENSBTAP00000056548/1-836 CD bmy_04151T0/1-852 -- BACU009578/1-719 --