KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:43 2014 Check: 00 .. Name: ENSBTAP00000056551/1-424 Len: 425 Check: 3721 Weight: 1.00 Name: ENSP00000262622/1-424 Len: 425 Check: 3574 Weight: 1.00 Name: ENSTTRP00000004977/1-424 Len: 425 Check: 4440 Weight: 1.00 Name: bmy_14602T0/1-399 Len: 425 Check: 8344 Weight: 1.00 Name: BACU000570/1-314 Len: 425 Check: 8369 Weight: 1.00 // 1 50 ENSBTAP00000056551/1-424 MSP-RAGTMR LACMFSSILL FGAAGLLLFI SLQDPTELTP HQAPGIKFSI ENSP00000262622/1-424 MTL-RPGTMR LACMFSSILL FGAAGLLLFI SLQDPTELAP QQVPGIKFNI ENSTTRP00000004977/1-424 MAP-RAETMR LACMFSSILL MEAACLLLFI SLQDPTELAL QQVAGIKFNI bmy_14602T0/1-399 MKPAHPGAPR PAEMAK---- ---------I AKQMPRNKVQ HQATGA---- BACU000570/1-314 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000056551/1-424 RPQQPHNDLP PGSSQDGPFK AATERVTRDL SSRAPRGLSL RMSQDPQAQL ENSP00000262622/1-424 RPRQPHHDLP PGGSQDGDLK EPTERVTRDL SSGAPRGRNL PAPDQPQPPL ENSTTRP00000004977/1-424 KPQEPHSDLP SGSSQDGDFK APTESVTRDL SSRAPRGLNL QVSQQPQTHL bmy_14602T0/1-399 ---------P QRSSQDGDFK APTERVTRDL PSRAPRGLNL QVSQQPQAHL BACU000570/1-314 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000056551/1-424 NVGARLRPRQ RRRRLLIKKM PAAAALPANS SAGTLARPAP GALDGRWARL ENSP00000262622/1-424 QRGTRLRLRQ RRRRLLIKKM PAAATIPANS SDAPFIRPGP GTLDGRWVSL ENSTTRP00000004977/1-424 NVGARLRPRQ RRRRLLIKKM PAAAAIPANS SAGTFVRPAP RALDGRWVSL bmy_14602T0/1-399 NVGARLRPRQ RRRRLLIKKM PAAAAIPANS SAGTFVRPAP RALDGRWVSL BACU000570/1-314 ---------- -RRRLLIKKM PAAAAIPANI SAGTFVRPAP RALDGRWVSL 151 200 ENSBTAP00000056551/1-424 RETQRERKRV MREACAKYRA SSSRRAVTPR HVSRIFVEDR HRVLYCEVPK ENSP00000262622/1-424 HRSQQERKRV MQEACAKYRA SSSRRAVTPR HVSRIFVEDR HRVLYCEVPK ENSTTRP00000004977/1-424 HQSQQERKRV MREACAKYRA SSSRRAVTPR HVSRIFVEDR HRVLYCEVPK bmy_14602T0/1-399 HQSQQERKRV LREACAKYRA SSSRRAVTPR HVSRIFVEDR HRVLYCEVPK BACU000570/1-314 HQSQQERKRV MREACAKYRA SSSRRAVTPR HVSRIFVEDR HRVLYCEVPK 201 250 ENSBTAP00000056551/1-424 AGCSNWKRVL MVLAGLASST TDIQHDTVHY GSALKRLDTF DRQGILHRLG ENSP00000262622/1-424 AGCSNWKRVL MVLAGLASST ADIQHNTVHY GSALKRLDTF DRQGILHRLS ENSTTRP00000004977/1-424 AGCSNWKRVL MVLAGLASST TDIQHNTVHY GSALRRLDTF DRQGILHRLS bmy_14602T0/1-399 AGCSNWKRVL MVLAGLASST TDIQHNTVHY GSALKRLDTF DRQGILHRLS BACU000570/1-314 AGCSNWKRVL MVLAGLASST TDIQHNTVHY GSALKRLDTF DRQGILHRLS 251 300 ENSBTAP00000056551/1-424 TYTKMLFVRE PFERLVSAFR DKFEHPNSYY HPVFGKAILA RYRANASREA ENSP00000262622/1-424 TYTKMLFVRE PFERLVSAFR DKFEHPNSYY HPVFGKAILA RYRANASREA ENSTTRP00000004977/1-424 TYTKMLFVRE PFERLVSAFR DKFEHPNSYY HPVFGKAILA RYRANASREA bmy_14602T0/1-399 TYTKMLFVRE PFERLVSAFR DKFEHPNSYY HPVFGKAILA RYRANASREA BACU000570/1-314 TYTKMLFVRE PFERLVSAFR DKFEHPNSYY HPVFGKAILA RYRANASREA 301 350 ENSBTAP00000056551/1-424 LRTGSGVRFP EFVQYLLDVH RPVGMDIHWD HVSRLCSPCL IDYDFVGKFE ENSP00000262622/1-424 LRTGSGVRFP EFVQYLLDVH RPVGMDIHWD HVSRLCSPCL IDYDFVGKFE ENSTTRP00000004977/1-424 LRTGSGVRFP EFIQYLLDVH RPVGMDIHWD HVSRLCSPCL IDYDFVGKFE bmy_14602T0/1-399 LRTGSGVRFP EFIQYLLDVH RPVGMDIHWD HVSRLCSPCL VDYDFVGKFE BACU000570/1-314 LRTGAGVRFP EFIQYLLDVH RPVGMDIHWD HVSRLCSPCL VDYDFVGKFE 351 400 ENSBTAP00000056551/1-424 SMEDDANFFL SLIHAPRNLT FPRFKDRHSE EARTTSRITH QYFAQLSTLQ ENSP00000262622/1-424 SMEDDANFFL SLIRAPRNLT FPRFKDRHSQ EARTTARIAH QYFAQLSALQ ENSTTRP00000004977/1-424 SMEDDADFFL SLVHAPRNLT FPRFKDRHSQ EARTTAQIAH QYFAQLSTPQ bmy_14602T0/1-399 SMEDDANFFL SLIRAPRNLT FPRFKDRHSQ EARTTAQIAH QYFAQLSTLQ BACU000570/1-314 SMEDDANFFL SLIRAPRNLT FPRFKDRHSQ EARTTAQIAH QYFAQLSTLQ 401 450 ENSBTAP00000056551/1-424 RQRTYDFYYM DYLMFNYSKP FADLY ENSP00000262622/1-424 RQRTYDFYYM DYLMFNYSKP FADLY ENSTTRP00000004977/1-424 RQRTYDFYYM DYLMFNYSKP FADLY bmy_14602T0/1-399 RQRTYDFYYM DYLMFNYSKP FADLY BACU000570/1-314 RQRTYDFYYM DYLMFNYSKP FADLY