KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:44 2014 Check: 00 .. Name: ENSBTAP00000056561/1-563 Len: 564 Check: 4455 Weight: 1.00 Name: ENSP00000343115/1-562 Len: 564 Check: 9787 Weight: 1.00 Name: bmy_00122T0/1-564 Len: 564 Check: 4108 Weight: 1.00 Name: ENSTTRP00000003868/1-561 Len: 564 Check: 5701 Weight: 1.00 // 1 50 ENSBTAP00000056561/1-563 MLACLPGPGD LSFQLLSHTQ MNTGLQKWDT TQKMRTAHYP TPAELDAYAK ENSP00000343115/1-562 MLACLPGPGD LSFQLLSHTQ MNTGLQKWDT TQKMRTAHYP TPAELDAYAK bmy_00122T0/1-564 MLACLPGPGD LSFQLLSHTQ MNTGLQKWDT TQKMRTAHYP TPAELDAYAK ENSTTRP00000003868/1-561 MLACLPGPGD LSFQLLSHTQ MNTGLQKWDT TQKMRTAHYP TPAELDAYAK 51 100 ENSBTAP00000056561/1-563 KVANNPLTIK IFPNSVKVPQ RKHVRRTVNG LDTSAQRYSP YPTQAATRAG ENSP00000343115/1-562 KVANNPLTIK IFPNSVKVPQ RKHVRRTVNG LDTSAQRYSP YPTQAATKAG bmy_00122T0/1-564 KVANNPLTIK IFPNSVKVPQ RKHVRRTVNG LDTSAQRYSP YPTQAATKAG ENSTTRP00000003868/1-561 KVANNPLTIK IFPNSVKVPQ RKHVRRTVNG LDTSAQRYSP YPTQAATKAG 101 150 ENSBTAP00000056561/1-563 LLAIVKVPAK SILKDFDGTR ARLLPEAIMN PPVAPYATVA PSTLAHPQAQ ENSP00000343115/1-562 LLAIVKVPAK SILKDFDGTR ARLLPEAIMN PPVAPYATVA PSTLAHPQAQ bmy_00122T0/1-564 LLAIVKVPAK SILKDFDGTR ARLLPEAIMN PPVAPYATVA PSTLAHPQAQ ENSTTRP00000003868/1-561 LLAIVKVPAK SILKDFDGTR ARLLPEAIMN PPVAPYATVA PSTLAHPQAQ 151 200 ENSBTAP00000056561/1-563 ALARQQALQH AQTLAHAPPQ TLQHPQGIPP PQALSHPQSL QQPQGLGHPQ ENSP00000343115/1-562 ALARQQALQH AQTLAHAPPQ TLQHPQGIPP PQALSHPQSL QQPQGLGHPQ bmy_00122T0/1-564 ALARQQALQH AQTLAHAPPQ TLQHPQGIPP PPALSHPQSL QQPQGLGHPQ ENSTTRP00000003868/1-561 ALARQQALQH AQTLAHAPPQ TLQHPQGIPP PPALSHPQSL QQPQGLGHPQ 201 250 ENSBTAP00000056561/1-563 PMAQTQGLVH PQALSHQGLQ HPPTPLLHGG RKMPDSDAPP NVTVSTSTIP ENSP00000343115/1-562 PMAQTQGLVH PQALAHQGLQ HPHNPLLHGG RKMPDSDAPP NVTVSTSTIP bmy_00122T0/1-564 PMAQTQGLVH PQALSHQGLQ HLPTPLLHGG RKMPDSDAPP NVTVSTSTIP ENSTTRP00000003868/1-561 PMAPTQGLVH PQALSHQGLQ HLPTPLLHGG RKMPDSDAPP NVTVSTSTIP 251 300 ENSBTAP00000056561/1-563 LSMAATLQHS QPPDLSSIVH QINQFCQTRA GVSTTSVCEG QIANPSPISR ENSP00000343115/1-562 LSMAATLQHS QPPDLSSIVH QINQFCQTRA GISTTSVCEG QIANPSPISR bmy_00122T0/1-564 LSMAATLQHS QPPDLSSIVH QINQFCQTRA GISTTSVCEG QIANPSPISR ENSTTRP00000003868/1-561 LSMAATLQHS QPPDLSSIVH QISQFCQTRA GISTTSVCEG QIANPSPISR 301 350 ENSBTAP00000056561/1-563 SLLINASTRV STHSVPTPMP SCVVNPMEHT HAASAALPPA GPVNLPAGLS ENSP00000343115/1-562 SLLINASTRV STHSVPTPMP SCVVNPMEHT HAATAALPAA GPVNLPTGIS bmy_00122T0/1-564 SLLINASTRV STHGVPTPMP SCVVNPMEHT HAAAAALPAA GPVNLPTGIS ENSTTRP00000003868/1-561 SLLINASTRV STHGVPTPMP SCVVNPMEHT HAAAAALPAA GPVNLPTGIS 351 400 ENSBTAP00000056561/1-563 RAPTGYPSDL KPVAWNQHQL AHLQQMCGEA GGTPAPGLTG KHAAGRELAG ENSP00000343115/1-562 RVPTGYPSDL KPVTWNQHQL AHLQQMCSEA SGTPAPGLTG KHAAGRELAG bmy_00122T0/1-564 RAPTGYPSDL KPVAWNQHQL AHLQQMCSEA GGTPAPGLTG KHAAGRELAG ENSTTRP00000003868/1-561 RAPTGYPSDL KPVAWNQHQL AHLQQMCSEA GGTPAPGLTG KHAAGRELAG 401 450 ENSBTAP00000056561/1-563 PGLVGKTPAY PQELCLAQSF HLKPPLEKPT PSPPVNGLAA PLAYPNGHYF ENSP00000343115/1-562 PGFVGKAPAY PQELCLAQSF HLKPPLEKPT PSPPVNGMAA PLAYPNGHYF bmy_00122T0/1-564 PGFVGKAPAY PQELCLAQAF HLKPPLEKPT PSPPVNGLAA PLAYPNGHYF ENSTTRP00000003868/1-561 PGFVGKAPAY PQELCMAQAF HLKPPLEKPT PSPPVNGLAA PLAYPNGHYF 451 500 ENSBTAP00000056561/1-563 QPLWNNILPT PNSDSSGSQD LAVPFHGGQP TGAPLDC-AA VAAGAHFRAG ENSP00000343115/1-562 QPLWNNILPT PNSDSSGSQD LAMPFHGGQP TGAPLDC--A AAPGAHYRAG bmy_00122T0/1-564 QPLWNNILPT PNSDSSGSQD LAMPFHSGQP AGAPLDCAAA AAAGAHYRAG ENSTTRP00000003868/1-561 QPLWNNILPT PNSDSSGSQD LAVPFHSGQP AGAPLDC--- AAAGAHYRAG 501 550 ENSBTAP00000056561/1-563 TGGGPVASQN SLIQTVDYLS GDFQQACFRE QSLAMLSKAH RAPGNRAPDP ENSP00000343115/1-562 TGGGPVASQN SLMQTVDYLS GDFQQACFRE QSLAMLSKAH RAPGNRAPDP bmy_00122T0/1-564 TGGGPVASQN SLVQTLDYLS GDFPQACFRD QSLAMLSKAH RAPGSRAPDP ENSTTRP00000003868/1-561 TGGGPVASQN SLVQTVDYLS GDFPQACFRD QSLAVLSKAH RAPGSRAPDP 551 600 ENSBTAP00000056561/1-563 TDSRSLHVQH PGYR ENSP00000343115/1-562 TESRSLHIQH PGYR bmy_00122T0/1-564 TDSRNLHIQH PGYR ENSTTRP00000003868/1-561 TDSRNLHIQH PGYR