KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:45 2014 Check: 00 .. Name: ENSP00000380697/1-516 Len: 555 Check: 1243 Weight: 1.00 Name: ENSBTAP00000056564/1-480 Len: 555 Check: 7038 Weight: 1.00 Name: bmy_04979T0/1-535 Len: 555 Check: 2821 Weight: 1.00 Name: ENSTTRP00000010571/1-504 Len: 555 Check: 8203 Weight: 1.00 // 1 50 ENSP00000380697/1-516 -MPVPERPAA GPDSPRPGTR RAAPRVLFGE WLLGEISSGC YEGLQWLDEA ENSBTAP00000056564/1-480 -------MAE APDR------ -GTPRVLFGD WLLGEVSSGR YEGLRWLDAA bmy_04979T0/1-535 -------MAV APDG------ -GTPRVLFGD WLLGEVSSGR YEGLRWLDAA ENSTTRP00000010571/1-504 TPPTPPVARA RPDA-RLLAR RGTPRVLFGD WLLGEVSSGR YEGLRWLDAA 51 100 ENSP00000380697/1-516 RTCFRVPWKH FARKDLSEAD ARIFKAWAVA RGRWPPSSRG GGPPPEAETA ENSBTAP00000056564/1-480 RTRFRVPWKH FARKDLGEAD SRIFKAWAVA RGRWPLRS-G GGAPPIPESA bmy_04979T0/1-535 RTRFRVPWKH FARKDLGEAD SRIFKAWAVA RGRWPLRS-S GGARPTAESA ENSTTRP00000010571/1-504 RTCFRVPWKH FSRKDLGEAD SRIFKAWAVA RGRWPLRS-S AGARPAAESA 101 150 ENSP00000380697/1-516 ERAGWKTNFR CALRSTRRFV MLRDNSGDPA DPHKVYALSR ELCWREGPG- ENSBTAP00000056564/1-480 LRASWKTNFR CALRSTQRFV MLEDNSGDPT DPHKVYKISS EPGCPEGLG- bmy_04979T0/1-535 LRASWKTNFR CALRCTRRFV MLQDNSGDPT DPHKVYMVTP KPACGESPG- ENSTTRP00000010571/1-504 LRASWKTNFR CALHCTRRFV MLQDNSGDPT DPHKVYMVTP GPACGESPSI 151 200 ENSP00000380697/1-516 TDQTEAEAPA AVPPPQGGPP GPFLAHTHA- -------GLQ APGPLPAPAG ENSBTAP00000056564/1-480 FDQGEDEALE DAPPARGGLL GPCLASDTGE SLGH---RLN PEPCPPSLAG bmy_04979T0/1-535 ISQGEDEALE DTPPTRDGLL GPHLAADAGE RLGHGLAGLS PEPCAPSPAG ENSTTRP00000010571/1-504 ISQGEDKALE DAPPTRDGLL GPYLAADAG- ---------L ALSPVPSPAG 201 250 ENSP00000380697/1-516 DKGDLLLQAV QQSCLADHLL TASWGADPVP TKAPG----E GQEGLPLTGA ENSBTAP00000056564/1-480 DARDLLIQAL QQSCLEDHLL ---------- ---------- ---------- bmy_04979T0/1-535 DSGDLLLQAL QQSCLEDHLL KAACGVAPTA PEAAGKGLLE GDALLCRA-L ENSTTRP00000010571/1-504 DAGDLLIQAL QQSCLEDHVL KAACGVEPIA PGAPG----E GRGGLCPAEF 251 300 ENSP00000380697/1-516 CAGGPGLPAG ELYGWAVETT PSPGPQPA-- --ALTTGEAA APESPHQAEP ENSBTAP00000056564/1-480 ---------- -------DLT P-----PE-- --APDAGPPP EPWQPLEAEP bmy_04979T0/1-535 CAKGRDRQDS RVPG---ERG PGGGGCPAGM VLARDTGPPP AAWQPREAEP ENSTTRP00000010571/1-504 CVP---RGGP ELPAW--ELC P-----PVNV APSPRPGPPP APWQPREAEP 301 350 ENSP00000380697/1-516 YLSPSPSACT AVQ------- ---------- EPSPGALDVT IMYKGRTVLQ ENSBTAP00000056564/1-480 HMGASASACT PMAGEPPLAG PGYSQLGLQP EPSLGALDLS ILYKGRTVLQ bmy_04979T0/1-535 CTAASPSACT LMAGPLHVAG PTCSHLRLHT LPSLGALDLT ITYKGRTVLQ ENSTTRP00000010571/1-504 RTTASPSACT LMA------- ---------- VPSLGALDLT ITYKGRTVLR 351 400 ENSP00000380697/1-516 KVVGHPSCTF LYGPPDPAVR ATDPQQVAFP SPAELPDQKQ LRYTEELLRH ENSBTAP00000056564/1-480 EVVGRPRCVL LYGPSAVAGG APAPQQVAFP SPAGLPDQKQ LHYTEKLLQH bmy_04979T0/1-535 EVVGRPSCVL LYGPPGVGGG ASEPQRVAFP SPAELPDQKQ LHYTEKLLQH ENSTTRP00000010571/1-504 EVVGRPSCVL LYGPPDVGGG ASEHQRVAFP SPAELPDQKQ LHYTEKLLQH 401 450 ENSP00000380697/1-516 VAPGLHLELR GPQLWARRMG KCKVYWEVGG PPGSASPSTP ACLLPRNCDT ENSBTAP00000056564/1-480 VAPGLQLELR GPWLWARRLG KCKVYWEVGG PLGSASTSSP ARLLPRDCDT bmy_04979T0/1-535 VAPGLQLELR GLRLWARRLG KCKVYWEVGG PLGSASPSTP ARLLPRNCDT ENSTTRP00000010571/1-504 VAPGLQLELR GLRLWARRLG KCKVYWEVGG PLGSASSSTP ARLLPRNCDT 451 500 ENSP00000380697/1-516 PIFDFRVFFQ ELVEFRARQR RGSPRYTIYL GFGQDLSAGR PKEKSLVLVK ENSBTAP00000056564/1-480 PIFDFGTFFQ ELLEFRAQRR RGSPHYTIYL GFGQDLSVGR PKEKSLVLVK bmy_04979T0/1-535 PIFDLGTFFQ ELGEFQACRR RGSPHYTIYL GFGQDLSVGR PKEKSLVLVK ENSTTRP00000010571/1-504 PIFDFSTFFQ ELGEFEACRR RGSPHYTIYL GFGQDLSVGR PKEKSLVLVK 501 550 ENSP00000380697/1-516 LEPWLCRVHL EGTQREGVSS LDSSSLSLCL SSANSLYDDI ECFL----ME ENSBTAP00000056564/1-480 LEPWLCRAYL EAVQREGVSS LDSGSLSLCL SSSNSLYEDL EHFLEHFLME bmy_04979T0/1-535 LEPWLCRAYL EGVQREGASS LDSGSLSLCL SSSNSLYDDL EHFLEHFLME ENSTTRP00000010571/1-504 XXXXXXXXXX XXXXXXXXXX LDSGSLSLCL SSSNSLYDDL EHFLEHF--- 551 600 ENSP00000380697/1-516 LEQPA ENSBTAP00000056564/1-480 VEQAA bmy_04979T0/1-535 VEQPG ENSTTRP00000010571/1-504 -----