KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:46 2014 Check: 00 .. Name: ENSP00000219431/1-298 Len: 310 Check: 8081 Weight: 1.00 Name: ENSBTAP00000056578/1-296 Len: 310 Check: 2701 Weight: 1.00 Name: ENSTTRP00000011443/1-269 Len: 310 Check: 5199 Weight: 1.00 Name: bmy_01853T0/1-277 Len: 310 Check: 9244 Weight: 1.00 Name: BACU019897/1-269 Len: 310 Check: 3264 Weight: 1.00 // 1 50 ENSP00000219431/1-298 MVTPALQMKK PKQFCRRMGQ KKQRPARAGQ PHSSSDAAQA PAEQPHSSSD ENSBTAP00000056578/1-296 LVAPVLQMRS PFQLSCTMGQ KKQRALE--- ---------- -AKRHQNPSD ENSTTRP00000011443/1-269 ---------- -----LRMGQ KKQRVGD--- ---------- --KRHQSPPD bmy_01853T0/1-277 ---------- -------MGQ KKQRLLE--- ---------- -AKRHQSPPD BACU019897/1-269 ---------- ------RMGQ KKQRLLE--- ---------- -AKRHQSPPG 51 100 ENSP00000219431/1-298 AAQAPCPRER CLGPPTTPGP YRSIYFSSPK GHLTRLGLEF FDQPAVPLAR ENSBTAP00000056578/1-296 GTQTPSPKEL HLGPPATLGP TRSIYFSSPE GRPARLGSAF FDQPAVSLAR ENSTTRP00000011443/1-269 GTRTSSPKEP RLEPPTTLGP QRSIYFSSLK GRPGRLGSEF FDQPAVSLAR bmy_01853T0/1-277 GPRTASPKEP RLGPPTTLGP QRSIYFSSLK GXPARLGSEF FNQPAVPLAQ BACU019897/1-269 VTRTASPKEP RLGPPMTLGP QRSIYFSSLK GRPARLGSEF FDQPAVPLAR 101 150 ENSP00000219431/1-298 AFLG--QVLV RRLPNGTELR GRIVETEAYL GPEDEAAHSR GGRQTPRNRG ENSBTAP00000056578/1-296 AFLGQEQILV RRLDDGTELR GRIVETEAYL GPEDEAAHSR GGRQTPRNRG ENSTTRP00000011443/1-269 AFLG--QVLV RRLDDGTELR GRVVETEAYL GPEDEAAHSR GGRQTPRNRG bmy_01853T0/1-277 AFLG--QVLV RRLDDGTELR GRVVETEAYL GPEDEAAHSR GGRQTPRNRG BACU019897/1-269 AFLG--QVLV RRLDDGTELR GRVVETEAYL GPEDEAAHSR GGRQTPRNRG 151 200 ENSP00000219431/1-298 MFMKPGTLYV YIIYGMYFCM NISSQGDGAC VLLRALEPLE GLETMRQLRS ENSBTAP00000056578/1-296 MFMKPGTLYV YLIYGMYFCM NVSSRGDGAC VLLRALEPLG GLEAMRQLRH ENSTTRP00000011443/1-269 MFMKPGTLYV YLIYGIYFCM NVSSQGDGAC VLLRALEPLG GLEAMRQLRH bmy_01853T0/1-277 MFMKPGTLYV YLIYGMYFCM NVSSQGDGAC VLLRALEPLG GLEAMRQLRH BACU019897/1-269 MFMKPGTLYV YLIYGMYFCM NVSSQGDGAC VLLRAVEPLG GLEAMRQLRH 201 250 ENSP00000219431/1-298 TLRKGTASRV LKDRELCSGP SKLCQALAIN KSFDQRDLAQ DEAVWLERGP ENSBTAP00000056578/1-296 ALRKGAAGRA LKDRELCNGP SKLCQALAID RSFDQRDLAR DESVWLEQGP ENSTTRP00000011443/1-269 TLRKGVAGRA LKDLELCNGP SKLCQALAID KSFDQRDLAT DEAVWLERGP bmy_01853T0/1-277 TLRKGAAGRA LKDLELCNGP SKLCQALAID KSFDQRDLAT DEAVWLERGP BACU019897/1-269 TLRKGAAGRA LKDLELCNGP SKLCQALAID KSFDQRDLAT DEAVWLERGP 251 300 ENSP00000219431/1-298 LEPSEPAVVA AARVGVGHAG EWARKPLRFY VRGSPWVSVV DRVAEQDTQA ENSBTAP00000056578/1-296 PEPSEPAVVA AARVGIGQAG EWVQKPLRFY IRGSPWVSVV DRAAERDTQT ENSTTRP00000011443/1-269 LGPSEPAVVA AARVGVGSAG EWALKPLRFY VQGSPWVSVV DRAAKRNTQA bmy_01853T0/1-277 LGPSEPAVVA AARVGIGYAG EWALKPLRFY VQGSPWVSVV DRAAERDAQA BACU019897/1-269 LGPSEPAVVA AARVGIGHAG EWALKPLRFY VQGSPWVSVV DRAAERDAQA 301 350 ENSP00000219431/1-298 ---------- ENSBTAP00000056578/1-296 GARACSHKDF ENSTTRP00000011443/1-269 R--------- bmy_01853T0/1-277 RAKASRDEDF BACU019897/1-269 R---------