KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:28:47 2014 Check: 00 .. Name: ENSBTAP00000056585/1-861 Len: 1166 Check: 8539 Weight: 1.00 Name: bmy_00445T0/1-782 Len: 1166 Check: 9141 Weight: 1.00 Name: ENSTTRP00000007132/1-764 Len: 1166 Check: 8080 Weight: 1.00 Name: BACU015162/1-984 Len: 1166 Check: 3980 Weight: 1.00 // 1 50 ENSBTAP00000056585/1-861 ---------- ---------- ---------- ---------- ---------- bmy_00445T0/1-782 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007132/1-764 ---------- ---------- ---------- ---------- ---------- BACU015162/1-984 TATLRPYLSA VRATLQAALC LENFSSQVVE RHNKPEVEVR SSKELLLQPV 51 100 ENSBTAP00000056585/1-861 ---------- ---------- ---------- -----MQGPT AALLLRAGEL bmy_00445T0/1-782 ---------- ---------- ---------- -----MHGPG AALLLRAGEL ENSTTRP00000007132/1-764 ---------- ---------- ---------- ---------- ---------- BACU015162/1-984 TISRHEKEKV LIEGSINSVR VSIAVKQADE IEKILCHKFM RFMMMRAENF 101 150 ENSBTAP00000056585/1-861 GAAQPDSTAW Y--------- ---------- ---------- ---------- bmy_00445T0/1-782 VATPRGSTAW Y--------- ---------- ---------- ---------- ENSTTRP00000007132/1-764 ---------- ---------- ---------- ---------- ---------- BACU015162/1-984 FILRRKPVEG YDISFLITNF HTEQMYKHKL VDFVIHFMEE IDKEISEMKL 151 200 ENSBTAP00000056585/1-861 ---------- ----RQERGP VCSWPRKPQP LER------- ---------- bmy_00445T0/1-782 ---------- ----RQDGGP VCNWPRKLLP PEP------- ---------- ENSTTRP00000007132/1-764 ---------- ---------- ---------- ---------- ---------- BACU015162/1-984 SVNARARIVA EEFLKNDGGP VCSWPRKLLP PEPRTSPPAP WPCAGHSEFR 201 250 ENSBTAP00000056585/1-861 ---RATSPAP WPRARHSEFR LPEKGPAHGQ DWVCSPASAR RLDCALRPSA bmy_00445T0/1-782 ---RTSPPAP WPSAGHSEFR LPEEAPAGGQ RWAGSLDSAR RLGCDLESSA ENSTTRP00000007132/1-764 ---------- ---------- ---------- ---------- ---------- BACU015162/1-984 FPARTSPPAP WPCAGHSEFR FPEEAPAGGQ RWAGSPASAR RLACDLESSA 251 300 ENSBTAP00000056585/1-861 HDSHAQGAEN PRLPGPSPTR AQEDAPPLDG SLVLWRGFSK ASQHMGRLRN bmy_00445T0/1-782 HGSHTQGAAD PRPPGPSPTP AQEDAPPQD- ---------- ---------- ENSTTRP00000007132/1-764 ---------- ---------- ---------- ---------- ----MGRLRN BACU015162/1-984 HGSHAQGAAD PRPPGPSPTP AQEDAPPQDG SLVLWRGFSK ASQHMGRLRN 301 350 ENSBTAP00000056585/1-861 AKIHVERAVK QKKIFMIQGR YPVIRCLLRQ RGWVEKKMVH HLGTTLPQPH bmy_00445T0/1-782 ---------- --------GR YPVIRCLLRR RGWVEKKMVH HLGTTLPPPH ENSTTRP00000007132/1-764 AKIHVERAIK QKKIFMIQGC YPVIRWLLRQ RGWVEKKMVH HLGTTLPPPH BACU015162/1-984 AKIHVERAIK QKKIFMIQGR YPVIRCLLRR RGWVEKKMVH HLGTTLPPPH 351 400 ENSBTAP00000056585/1-861 KDLDSSVMGD SDTAEDEDED EEEAFRPPQL FDFDELLEFD DLHGTHALMS bmy_00445T0/1-782 KDLDSSVMGD SDTIEDEDED EDEAFRPPQL FDFDDLLEFD DLHGTHALMS ENSTTRP00000007132/1-764 KDL-----GD SDTTEDEDED EDEAFRLPQL --FDDLLEFD DLHGTHALM- BACU015162/1-984 KDLDSSVMGD SDTTEDEDED EDEAFWPPQL FDFDDLLEFD DLHGTHALMS 401 450 ENSBTAP00000056585/1-861 RMVRNEIPYF IWTTRRDILD CRFLSKDQMI NHYARAGSFT TKVGLCLNLR bmy_00445T0/1-782 RMVRNEIPYF IWTTRRDVLD CRFLSKDQMI NHYARAGSFT TKVGLCLNLR ENSTTRP00000007132/1-764 ---------- ---------- ---------- ---------- --VGLCLNLR BACU015162/1-984 RMVRNEIPYF IWTTRRDVLD CRFLSKDQMI NHYARAGSFT TKVGLCLNLR 451 500 ENSBTAP00000056585/1-861 NLPWFDEADA DSFFPRCYRL GAEDDKKAFI -EDFWLTAAR NVLKLVVKCE bmy_00445T0/1-782 NLPWFDEADA DSFFPRCYRL GAEDDKKAFI AEDFWLTAAR NVLKLVVKSE ENSTTRP00000007132/1-764 NLPWFDEADA DSFFPRCYRL GAEDDKKAFI -EDFWLTAAR NVLKLVVKSE BACU015162/1-984 NLPWFDEADA DSFFPRCYRL GAEDDKKAFI -EDFWLTAAR NVLKLVVKSE 501 550 ENSBTAP00000056585/1-861 WKSNSV--EE EEAPRDKQPK KQEKKPVSVS PEFVDEALCA CEEHLNNLAH bmy_00445T0/1-782 WKSYSIQAEE EEAPGDKQPK KQEKKPVTVS PEFVDEALCA CEEHLNNLAH ENSTTRP00000007132/1-764 WKSYSIQAEE AAAPGDKQPK KQEKKPVTVS PEFVDEALCA CEEHLNNVAH BACU015162/1-984 WKSYSIQAEE EEAPGDKQPK KQEKKPVTVS PEFVEEALCA CEEHLNNLAH 551 600 ENSBTAP00000056585/1-861 LDIDKDVATP PCLGPEGWSL FLQRYYQVVH EGAELRYLDT QVQRCEDILQ bmy_00445T0/1-782 VDIDKDMEAR LYLSPEGWSL FLQRYYQVVH EGAELRYLDS QVQRCEDVLQ ENSTTRP00000007132/1-764 VDIDKDMEAP LYLSPEGWSH FLQRYYQVVH EGAELRYLDT QVQRCEDILQ BACU015162/1-984 VDIDKDMEAP LYLSPEGWSL FLQRYYQVVH EGAELRYLDT QVQRCEDLLQ 601 650 ENSBTAP00000056585/1-861 QLRAVVPQMD MEGDRNIWIV KPGAKSRGR- ---------- ----GIMCMD bmy_00445T0/1-782 QLRAVVPQMD MEGDRNIWIV KPGAKSRGRG PKPGLIPDHP VSPEGIMCMD ENSTTRP00000007132/1-764 QLRAVVPQMD MEGDRNIWIV KPGAKSRGR- ---------- ----GIMCMD BACU015162/1-984 QLRAVVPQMD MEGDRNIWIV KPGAKSRGR- ---------- ----GIMCMD 651 700 ENSBTAP00000056585/1-861 HLEEMLKLVD CNPMMMKDGK WVVQKYIERP LLIFGTKFDL RQWFLVTDWN bmy_00445T0/1-782 HLEEMLKLVD GNPMVMKDGK WVVQKYIEQP LLIFGTKFDL RQWFLVTDWN ENSTTRP00000007132/1-764 HLEEMLKLVD GNPMMMKDGK WVVQKYIEQP LLIFGTKFDL RQWFLVTDWN BACU015162/1-984 HLEEMLKLVD GNPMVMKDGK WVVQKYIEQP LLIFGTKFDL RQWFLVTDWN 701 750 ENSBTAP00000056585/1-861 PLTVWFYRDS YIRFSTQPFS LKNLDNSVHL CNNSIQKHLE NSCHRHPLLP bmy_00445T0/1-782 PLTVWFYRDS YIRFSTQPFS LKNLDNSVHL CNNSIQKHLE NSCHRHPLLP ENSTTRP00000007132/1-764 PLTVWFYRDS YIRFSTQPFS LKNLDNSVHL CNNSIQKHLE NSCHRHPLLP BACU015162/1-984 PLTVWFYRDS YIRFSTQPFS LKNLDNSVHL CNNSIQKHLE NSCRRHPLLP 751 800 ENSBTAP00000056585/1-861 PDNMWSSQKF QAHLQETGAP NAWSTVIVPG MKAAVIHALQ TSQDTVQCRK bmy_00445T0/1-782 SDNMWSSQKF QAHLQEMGAP NAWSTVIVPG MKAAVIHALQ TSQDTVQCRK ENSTTRP00000007132/1-764 SDNMWSSQKF QAHLQEMGAP NAWSTIIVPG MKAAVIHALQ TSQDTVQCRK BACU015162/1-984 SDNMWSSQKF QAHLQEMGAP NAWSTVIVPG MKAAVIHALQ TSQDTVQCRK 801 850 ENSBTAP00000056585/1-861 ASFELYGADF VFGEDFQPWL IEINASPTMA PSTAVTARLC AGVQADTLRV bmy_00445T0/1-782 ASFELYGADF VFGEDFQPWL IEINASPTMA PSTAVTAQLC AGVQADTLRV ENSTTRP00000007132/1-764 ASFELYGADF VFGEDFQPWL IEINASPTMA PSTAVTARLC AGVQADTLRV BACU015162/1-984 ASFELYGADF VFGEDFQPWL IEINASPTMA PSTAVTARLC ASVQADTLRV 851 900 ENSBTAP00000056585/1-861 VIDWRLDRNC DTGAFELIYK QPAVEVPQYV GIRLLVEGST IKKPLAMSHR bmy_00445T0/1-782 ---------- ---------- -PAVEVPQYV GIRLLVEGST IKKPLAMCHR ENSTTRP00000007132/1-764 VIDQRLDRSC DTGAFELIYK QPAVEVPQYV GIRLLVEGST IKKPLAMCHR BACU015162/1-984 VIDRRLDRSC DTGAFELIYK QPAVEVPQYV GIRLLVEGST IKKPLAMCHR 901 950 ENSBTAP00000056585/1-861 RMAVRPALPH LLAPRGSGES KDSGSPIHRS ASRKVAGARS LGHTEKPDST bmy_00445T0/1-782 QTEVHPALPH LLTQRGSGEG KDSG------ ---------- ---------- ENSTTRP00000007132/1-764 QIEARPALPH LLTQRGSGEA HHHF------ ---------- ---------- BACU015162/1-984 QTEVRPALPH LLTQRGSGEG KDSG------ ---------- ---------- 951 1000 ENSBTAP00000056585/1-861 ATTSAPGKGK KAPYHFPSLH SKPRLPSPHV PWPQGQVLRL QHSKLVGTKA bmy_00445T0/1-782 ---------- ------TLTH SMARLPSPRV LRPQGRGLRL QHSRLVGSEA ENSTTRP00000007132/1-764 ---------- ------PTLH STAQLPSPRV LRPQGRGLRL QHSRLVGSEA BACU015162/1-984 ---------- ------TLTH STARLPSPRV LRPQGRGLRL QHSRLVGSEA 1001 1050 ENSBTAP00000056585/1-861 LSTTDKALMT LPTAKVLISL PPNPELKLAP NALKPKK--- ---------- bmy_00445T0/1-782 LSTTGKALMT LPTAKVLISL PPNPEPMLAP NALKPRK--- ---------- ENSTTRP00000007132/1-764 LSTTGKALMT LPTAKVLISL PPNPELKLAP NALKPRKALA PQCFHGPHLE BACU015162/1-984 LSTTGKALMP LPTAKFLISL PPNPELMLAP NALKPRK--- ---------- 1051 1100 ENSBTAP00000056585/1-861 ---------- ---------- ---------- ---------- ---------- bmy_00445T0/1-782 ---------- ------VGLE R--------- ---------- ---------- ENSTTRP00000007132/1-764 VTCALNALKL EIFLAPVGRS RPKATSRPDC DKPKAETRLM ATLSLPGPLP BACU015162/1-984 ---------- ------VGLE R--------- ---------- ---------- 1101 1150 ENSBTAP00000056585/1-861 ---------- ---------- ---------- ---------- ---------- bmy_00445T0/1-782 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007132/1-764 LISAHQGLGG VRDVWLQKSL LRVTALILDA APSKKQMKYL RLGSFSLRGR BACU015162/1-984 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000056585/1-861 ---------- ------ bmy_00445T0/1-782 ---------- ------ ENSTTRP00000007132/1-764 ESRVRLCTPR SRTRAR BACU015162/1-984 ---------- ------