KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:48 2014 Check: 00 .. Name: ENSTTRP00000014190/1-260 Len: 317 Check: 42 Weight: 1.00 Name: ENSP00000342137/1-275 Len: 317 Check: 8704 Weight: 1.00 Name: ENSBTAP00000056600/1-260 Len: 317 Check: 917 Weight: 1.00 Name: bmy_16340T0/1-255 Len: 317 Check: 2508 Weight: 1.00 Name: BACU008325/1-280 Len: 317 Check: 8617 Weight: 1.00 // 1 50 ENSTTRP00000014190/1-260 MQEVREGPAL GGGMQ----- -------EPS STQELPSPPP PPSPPS---P ENSP00000342137/1-275 MEEVREGHAL GGGMEADGPA SLQELPPSPR SPSPPPSPPP LPSPPSLPSP ENSBTAP00000056600/1-260 MEEVREGPEL GGGME----- -------EPA SPQEPASPPP PPSPPS---P bmy_16340T0/1-255 MEEVREGPAL GGGME----- -------EPA SPQEPPPSPP PPSPPS---P BACU008325/1-280 ME-------- ---------- -------EPA SPQEPPS--- ---------P 51 100 ENSTTRP00000014190/1-260 AAPETPGLPV PEQPTEGYAQ QLLLQEWAPP GGSLELPPRL TWKLLFLQRP ENSP00000342137/1-275 AAPEAPELPE PAQPSEAHAR QLLLEEWGPL SGGLELPQRL TWKLLLLRRP ENSBTAP00000056600/1-260 AAPETPRLPA PESPTEAHAR QLLLQEWAPP RGSLELPPRL TWKLLFLRRP bmy_16340T0/1-255 AAPETPGLPA PEQPTEAYAQ QLLLQEWAPP GGSLELPPRL TWKLLFLQRP BACU008325/1-280 AAPEAPGLPA PEQPTEAYAQ QLLLQEWAPP GGSLELPPRL TWKLLFLQRP 101 150 ENSTTRP00000014190/1-260 LYRNLLRSPN PEXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000342137/1-275 LYRNLLRSPN PEGINIYEPA PPTGPTQRPL ETLGNFRGWY IRTEKLQQNQ ENSBTAP00000056600/1-260 LYRNLLRSPN PEGINIYEPA PPTGPTQQPL EALGNFRGWH IRTEKLQQNL bmy_16340T0/1-255 LYRNLLRSPN PEGINIYEPA PPTGPTQQPL ETLDG-RPRL LRA----VFH BACU008325/1-280 LYRNLLRSPN PEGINIYEPA PPTGPTQQPL ETLGNFRGWD IKTEKLQQGL 151 200 ENSTTRP00000014190/1-260 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXYEDSRLD VCVYELHVWL ENSP00000342137/1-275 SWTVKQQCVD LLAEGLWEEL LDDEQPAITV MDWFEDSRLD ACVYELHVWL ENSBTAP00000056600/1-260 SWTVKQQCVD LLAEGLWEEL LDDEQPRITV MDWFEDSRLD ACVYELHVWL bmy_16340T0/1-255 SWTVKQQGVD LLAEGLWEEL LDVEQPHVTV MDWYEDSRLD VCVYELHVWL BACU008325/1-280 SWTVKQQGVD LLAEGLWEEL LDVERPHITV MDWYEDSRLD VCVYELHVWL 201 250 ENSTTRP00000014190/1-260 LAADRRTVIA QHHVAPRTSG RGPPGHWV-- ---------- ---------- ENSP00000342137/1-275 LAADRRTVIA QHHVAPRTSG RGPPGRWV-- ---------- ---------- ENSBTAP00000056600/1-260 LAADRSTVIA QHHVAPRTSG RGPPGHWI-- ---------- ---------- bmy_16340T0/1-255 LAADRHTVIA QHHVAPRTSG RGPPGHWV-- ---------- ---------- BACU008325/1-280 LAADRRTVIA QHHVAPRTSG RGPPGHWVQV RLPNPSATRT HAFVSQDLTE 251 300 ENSTTRP00000014190/1-260 ---------- ---------- QVSHVFRQYG PGVRFVHFLH KTKNRMEHGG ENSP00000342137/1-275 ---------- ---------- QVSHVFRHYG PGVRFIHFLH KAKNRMEPGG ENSBTAP00000056600/1-260 ---------- ---------- QVSHVFRQYG PGVRFVHFLH KTKNRMERGG bmy_16340T0/1-255 ---------- ---------- QVSHVFRQYG PGVRFVRFLH KTKNRMKRGG BACU008325/1-280 GGEQRLWVPH KNFFVTPVLP QVSHVFRQYG PGVRFVRFLH KTKNRMERGG 301 350 ENSTTRP00000014190/1-260 LLQTRVTDSS VSVQFRE ENSP00000342137/1-275 LRRTRVTDSS VSVQLRE ENSBTAP00000056600/1-260 LRRTRVTDSS VSVQFRE bmy_16340T0/1-255 LLRTRVTNSS VSVQFRE BACU008325/1-280 LLRTRVTNSS VSVQFRE