KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:51 2014 Check: 00 .. Name: ENSP00000329638/1-1349 Len: 1350 Check: 1031 Weight: 1.00 Name: ENSBTAP00000056619/1-1348 Len: 1350 Check: 7087 Weight: 1.00 Name: ENSTTRP00000004130/1-1347 Len: 1350 Check: 3734 Weight: 1.00 Name: bmy_20351T0/1-1269 Len: 1350 Check: 5267 Weight: 1.00 Name: BACU018886/1-1311 Len: 1350 Check: 8876 Weight: 1.00 // 1 50 ENSP00000329638/1-1349 MACYLVISSR HLSNGHYRGI KGVFRGPLCK NGSPSPDFAE K-KSTAKALE ENSBTAP00000056619/1-1348 MACYLVISSR HLSNGHYRGI KGVFRGPLCK NGSPSPDFPE KEKSTAKALE ENSTTRP00000004130/1-1347 MACYLVISSR HLSNGHYRGI KGVFRGPLCK NGSPSLDFPE KEKSAAKALE bmy_20351T0/1-1269 ---------- ---------- ---------- ------SF-- ---------- BACU018886/1-1311 ---------- ---------- ---------- ------DFPE KEKSTAKALE 51 100 ENSP00000329638/1-1349 DVKANFYCEL CDKQYHKHQE FDNHINSYDH AHKQRLKELK QREFARNVAS ENSBTAP00000056619/1-1348 DVKANFYCEL CDKQYHKHQE FDNHINSYDH AHKQRLKELK QREFARNVAS ENSTTRP00000004130/1-1347 DVKANFYCEL CDKQYHKHQE FDNHINSYDH AHKQRLKELK QREFARNVAS bmy_20351T0/1-1269 -----LFVFV C--------- ---------- --PQRLKELK QREFARNVAS BACU018886/1-1311 DVKANFYCEL CDKQYHKHQE FDNHINSYDH AHKQRLKELK QREFARNVAS 101 150 ENSP00000329638/1-1349 KSWKDEKKQE KALKRLHQLA ELRQQSECVS GNGPAYKAPR VAIEKQLQQG ENSBTAP00000056619/1-1348 KSWKDEKKQE KALKRLHQLA ELRQQSECVS ENGPAYKASK VPIEKQLQQG ENSTTRP00000004130/1-1347 KSWKDEKKQE KALKRLHQLA ELRQQSECVS GNGPAYKAPR VAIEKQLQQG bmy_20351T0/1-1269 KSWKDEKKQE KALKRLHQLA ELRQQSECVS GNGPAYKAPR VAIEKQLQQG BACU018886/1-1311 KSWKDEKKQE KALKRLHQLA ELRQQSECVS GNGPAYKAPR VAIEKQLQQG 151 200 ENSP00000329638/1-1349 IFPIKNGRKV SCMKSALLLK GKNLPRIISD KQRSTMPNRH QLQSDRRCLF ENSBTAP00000056619/1-1348 IFPVKNGRKV SCMKNALLLK GKNLSRSIAD KQRSTTANRH QLQTDRRRLF ENSTTRP00000004130/1-1347 IFPVKSGRKV SCMKSALLLK GKNLSRSISD KQQSTTPNQH QLQTD-RCLF bmy_20351T0/1-1269 IFPVKSGRKV SCMKSALLLK GKNLSRSISD KQRSTTPNQH QLQTD-RRLF BACU018886/1-1311 IFPVKSGRKV SCMKNALLLK GKNLSRSISD KQRSTTPNQH QLQTD-RRLF 201 250 ENSP00000329638/1-1349 GNQVLQTSSD LSNANHRTGV SFTFSKKVHL KLESSASVFS ENTEETHDCN ENSBTAP00000056619/1-1348 GNRVPQTSSD LSNANQRTGV SFSFSKKVHL KLESSASVFS ENTEETHDCN ENSTTRP00000004130/1-1347 GNQVPQTPSN LSNANHRTGV SFSFSKKVHL KLESSASVFS ENTEETHDCN bmy_20351T0/1-1269 GNQVPQTSSN LSNANHRTGV SFSFSKKVHL KLESSASVFS ENTEETHDCN BACU018886/1-1311 GNQVPQTSSN LSNANHRTGV SFSFSKKVHL KLESSASVFS ENTEEIHDCN 251 300 ENSP00000329638/1-1349 KSPIYKTKQT ADKCKCCRFA NKDTHLTKEK EVNISPSHLE SVLHNTISIN ENSBTAP00000056619/1-1348 KSPIYKTKST AEKCMCCRFA NEDTHLTKEK DINISSNHLE SILHNTLPIN ENSTTRP00000004130/1-1347 KSPVYKTKQT AEKCMRCRFA NEDTHLTKEK DRNILSSHLE SILHNTFSVS bmy_20351T0/1-1269 KSPIYKTKQT AEKCMCCRFA NEDTHLTKEK DRNILSSHLE SILHNTFSIS BACU018886/1-1311 KSPVYKTKQT AEKCMCCRFA NEDTHLTKEK DRNILSSHLE SILHNTFSIR 301 350 ENSP00000329638/1-1349 SKILQDKHDS IDETLEDSIG IHASFSKSNI HLSDVDFTPT SREKETRNTL ENSBTAP00000056619/1-1348 SQILQDKNDF VDEMLENSIG IHASFSKSNI HLSDVDFTPS SRAKETRNTL ENSTTRP00000004130/1-1347 SEILQDKNDS VDETLEDSIG IHASFSKSNI HLSDVDFTPS SRAKETRNTV bmy_20351T0/1-1269 SEILQDKNDS VDETLEDSIG IHASFSKSNI HLSDVDFTPS SRAKETRNTL BACU018886/1-1311 SEILQDKNDS VDETLEDSIG IHASFSKSNI HLSDVDFTPS SRAKETRDTL 351 400 ENSP00000329638/1-1349 KNTLENCVNH PCQANASFSP PNIYNHSDAR ISECLDEFSS LEPSEQKSTV ENSBTAP00000056619/1-1348 KNTSENRISH SCQANVSSSP TNIYKHSDAR VFGCLGEIPS IEPSEQSSSV ENSTTRP00000004130/1-1347 RNTSENLNNH SCQANVSSSP PNIYKHSDAR IFECLDELPS IEPSEQSSTV bmy_20351T0/1-1269 KNTSENLNNH SCQANVSSSP PNIYKHSDAR IFECLDELPS IEPSEQSSTV BACU018886/1-1311 KNTSENLNNH SCQANVSSSP PNIYKHSDAR IFECLDELPS IEPSEQSSTV 401 450 ENSP00000329638/1-1349 HLNPNSRIEN REKSLDKTER VSKNVQRLVK EACTHNVASK PLPFLHVQSK ENSBTAP00000056619/1-1348 HLNPNSRKQK REKSLDKTER VSRNAQSFIR EAYPHDVKAK ALPFLHVKSK ENSTTRP00000004130/1-1347 HLNPNSRKEK KEKSLDKIER VSRNVQSLVR EAYPRDVKSK SLPYLHVQSK bmy_20351T0/1-1269 HLNPNSRKEK KEKSLDKIER VNRNVQSLVR EAYPRDVKSK PLPYLHVQSK BACU018886/1-1311 HLNPNSRKEK KEKSLDKIER VNRNVQSLVR EAYPRDVKSK PLPYLHVQSK 451 500 ENSP00000329638/1-1349 DGHTTLQWPT ELLLFTKTEP CISYGCNPLY FDFKLSRNTK EDHNLEDLKT ENSBTAP00000056619/1-1348 DGHTTLQWPT ELLLFTKTEP CISYGCNPLY FDFKLSRNTK DGRDPEDLKT ENSTTRP00000004130/1-1347 DGHTTLQWPT ELLLFTKTEP CISYGCNPLY FDFKLSRNTK DGHYPEDLKT bmy_20351T0/1-1269 DGHTTLQWPT EMLLFTKTEP CISYGCNPLY FDFKLSRNTK DSHDPEDLKR BACU018886/1-1311 DGHTTLQWPT ELLLFTKTEP CISYGCNPLY FDFKLSRNTK DSHDPEDLKT 501 550 ENSP00000329638/1-1349 ELGKKPLELK TKRESQVSGL TEDQQKLIQE DYQYPKPKTM IANPDWEKFQ ENSBTAP00000056619/1-1348 ELQKEASEMK TTMENQVSGL IKDQQKLIQE DNRSLKPKMK IANPDWENFQ ENSTTRP00000004130/1-1347 ELLKEPSEMK TTMENQVSGL IKDQQKLIQE DNPSLKPKMM LANPDWENFQ bmy_20351T0/1-1269 ELLKEPSEMK TTMENQVSGL IKDQQKLIQE DNQSLKPKMM IANPDWENFQ BACU018886/1-1311 ELLKEPSEVK TTMENQVSGL IKDQQKLIQK DNQSLKPKMM IANPDWESFQ 551 600 ENSP00000329638/1-1349 RKYNLDYSDS EPNKSEYTFS ANDLEMKNPK VPLYLNTSLK DCAGKNNSSE ENSBTAP00000056619/1-1348 RKYNLGGNNS EPSMSERNFS ASDLEMKNPE VPAYLDISLK NCVGNNKNGG ENSTTRP00000004130/1-1347 RKYNLGYNNS EPSASEHNFS ASDLEMKNPE VPAYLDMSLK NCVRKNNNSD bmy_20351T0/1-1269 RKYNLGYNNS EPSASEHNFS ASDLEMKNPE VPAYLDISLK NCVRKNNNSD BACU018886/1-1311 RKYNLGYNNS EPSASEHNFS ASDLEMKNPE VPAYLDISLK NCVRKNNNSD 601 650 ENSP00000329638/1-1349 NKLKEASRAH WQGCRKAVLN DIDEDLSFPS YISRFKKHKL IPCSPHLEFE ENSBTAP00000056619/1-1348 NELQEPSRAH WQSCQRVILN DANKGLSFSP CTSRTKKHKL ISCDPHLDVE ENSTTRP00000004130/1-1347 NELKEPSRAH WQSCQRAILN DANEGLSFSP YISRTKKHKL ISCDPHLDFE bmy_20351T0/1-1269 NELKEPSRAH WQSCQRVIIS DANEGLSFSP YISRTKKHKL ISCDPHLDFE BACU018886/1-1311 NELKEPSRAH WQSCQRVILS DANEGLSFSP YISRTKKHKL ISCDPHLDFE 651 700 ENSP00000329638/1-1349 DERQFNCKSS PCTVGGHSDH GKDFSVILKS NHISMTSKVS GCGNQRYKRY ENSBTAP00000056619/1-1348 EVNQFTWKSS PYTIRDHSDH GKDFSVILNS NYISTTSGVS GCGRASYKIS ENSTTRP00000004130/1-1347 DGNKFTWNSS PYTVGGHSDH GKDFSVILNS NHISMTSRVS GCGKASYKRS bmy_20351T0/1-1269 DGNKFTWNSS PYTVRGHSDH GKDFSVILNS NHIRMTSRVS GCGKASYKRS BACU018886/1-1311 DGNKFTWNSS PYTVRGRSDH GKDFSVILNS NHIRMTSRVS GCGKASYKRS 701 750 ENSP00000329638/1-1349 SPQSCLSRYS SSLDTSPSSM SSLRSTCSSH RFNGNSRGNL LCFHKREHHS ENSBTAP00000056619/1-1348 SPKVSLNRCS SPSDTSHVST SSLRSSHSNY GSSGHDRGNL LYFCKREHNS ENSTTRP00000004130/1-1347 SPKVSLNTCS SPSDTSPGST SSLRSTCSKH RSSSHGRGNL LYFCKREHNS bmy_20351T0/1-1269 SPKVSLNTCS SPSDTSPGR- ---RSTCSKH RSSGHGRGNL LYFCKREHNS BACU018886/1-1311 SPKVSLNTCS SPSDTSPGST SSLRSTCSKH RSSGHGRGNL LYFCKREHNS 751 800 ENSP00000329638/1-1349 VERHKRKCLK HNCFYLSDDI TKSSQMQSEP QKERNCKLWE SFKNEKYSKR ENSBTAP00000056619/1-1348 VERHKRKRRK HSCFCFSEEL AKSDCPQSET ERGRSCKLWE SIKNEKYSKH ENSTTRP00000004130/1-1347 VERHKRKRRK HSCLFLSDEL AKSDCPQSET QSDRGCKLWE SVKNEKYSKH bmy_20351T0/1-1269 VERHKRKRRK HSCLFLSDVL AKSDCPQSAT QSDRGCKLWE SVKNEKYSKH BACU018886/1-1311 VERHKRKRRK HSCLFLSDGL TKSDCPQSAT QSDRGCKLWE SVKNEKYSKH 801 850 ENSP00000329638/1-1349 RYCHCRERQK LGKNQQQFSG LKSTRIIYCD SNSQISCTGS SKKPPNCQGT ENSBTAP00000056619/1-1348 AYGYCREKHK LGKN-QQFSG QKSKRITQCD FSSQVFCAGN SENPPNCQGP ENSTTRP00000004130/1-1347 GYGHCREKYK LGKN-QQFSG SKSKRITRCD SSSRFSCAGN SENPPNCQGP bmy_20351T0/1-1269 GYGHCREKYK LGKN-QQFSG PKSERITHCD SSSRFSCAGN SENPPNCQGP BACU018886/1-1311 GYGHCREKYK LGEN-QQFSG PNSKRITHCD SSSRFSCAGN SENPPNCQGP 851 900 ENSP00000329638/1-1349 QHDRLDSYSI EKMYYLNKSK RNQESLGSPH ICDLGKVRPM KCNSGNISCL ENSBTAP00000056619/1-1348 QHSRLGSHSR EKMYYLNKSK MNQQSLDSPH ICDLGKVKPM QCNSGNISYL ENSTTRP00000004130/1-1347 QHSRLGSYSR DKMYYLNKSE RSQQSLDSPH ICDLEKVKPM QCNSGNISCL bmy_20351T0/1-1269 QHSRLGSYSR EKMYYLNKSE RSQQSLDSPH ICDLGKVKAM QCNSGNISCL BACU018886/1-1311 QHSRLGSYSR EKMYYLNQSE RSQQSLDSPH ICDLEKVKPM QCNSGNISCL 901 950 ENSP00000329638/1-1349 LKNCSSGPSE TTESNTAEGE RTPLTAKILL ERVQAKKCQE QSSNVEISSN ENSBTAP00000056619/1-1348 LRNCSRSPSD TTELNPIEGE RTSLTAKSLL ERVQAKKCQE QSIQFEISSN ENSTTRP00000004130/1-1347 LKNCSSSPSE TTELNTVEGD RTPLTAKGLL ERVQAKKCQE QSTHFEVSSN bmy_20351T0/1-1269 LKNCSSSPSE TTELNTVEGE RTPLTAKSLL ERVQAKKCQE QSTHFEVSSN BACU018886/1-1311 LKNCSSSPSE TTELNTVEGE RTPLTAKSLL ERVQAKKCQE QSTHFEVSSN 951 1000 ENSP00000329638/1-1349 SCKSELEAPS QVPCTIQLAP SGCNRQALPL SEKIQYASES RNDQDSAIPR ENSBTAP00000056619/1-1348 SCKNESETLS QIQCVIPFTP PGCNRPSLPL PEKTPNKGRR RKDKGSAMQR ENSTTRP00000004130/1-1347 SCKNESEAPS QIPCTVQLTP PGCNRHALPL SEKLQNTSRR RKDKGSAMQR bmy_20351T0/1-1269 SCKNESEAPS QIQCTVQFTP PGCNRPALSL SEKIQNTSRR RKDKGGAMQR BACU018886/1-1311 SCKNESEAPS QIQCTVQFTP PGCNRPALPL SEKIQNTSRR RKDKGSAMQR 1001 1050 ENSP00000329638/1-1349 TTEKDKSKSS HTNNFTILAD TDCDNHLSKG IIHLVTESQS LNIKRDATTK ENSBTAP00000056619/1-1348 SIDKNKVKSS PTNDFTVLVG TDCDNHFSKG IIHVVAESHS PNMKKNPTTK ENSTTRP00000004130/1-1347 TIDKDKVKNS QTNDFTVLVD TDCDDHLSNG IIHVVAESQL PNMKKYPTTK bmy_20351T0/1-1269 TIDKDKVKNS ETNDFTVLVD TDCDDHLSKG IIHVVAESQL PNMKKYPTTK BACU018886/1-1311 TIDKDKVKNS QTNDFTVLVD TDCDDHLSKG IIHVVAESQL PNMKKYPTTK 1051 1100 ENSP00000329638/1-1349 EQSKPLISEI QPFIQSCDPV PNEFPGAFPS NKYTGVTDST ETQEDQINLD ENSBTAP00000056619/1-1348 EQPKSLINEV QPSIQSCDPV PNGFPGAFPS NRYSGITDSM ETKENDMNLD ENSTTRP00000004130/1-1347 EQSESLISEV QPFIQSCDPV PKDFPGAFSS NRYTGVTDST ETKEDQINLD bmy_20351T0/1-1269 EQSKSLISEV QPFIQSCDPV PKDFPGAFPS NRYTGVTDST ETKEDQINLD BACU018886/1-1311 EQSKSLISEV QPFIQSCDPV PKDFPGAFSS SRYTGVTDSI ETKEDQINLD 1101 1150 ENSP00000329638/1-1349 LQDVSMHINH VEGNINSYYD RTMQKPDKVE DGLEMCHKSI SPPLIQQPIT ENSBTAP00000056619/1-1348 LQDGSMQMNQ IEGNINSYYD RTMQKHDKVA DDLEVCHKSL SPPLIQQPIT ENSTTRP00000004130/1-1347 LQDVSMHMNQ VEGNINSYYD RTMQKHDKVA DDLEVCHKSL SPPLIQQPIT bmy_20351T0/1-1269 LQDVSMHMNQ VEGNINSYYD RTMQKHDKVA DDLEVCHKSL SPPLIQQPIT BACU018886/1-1311 LQDVSMHMNQ VEGNINSYYD RTMQKHDKVA DDLEVCHKSL SPPLIQQPIT 1151 1200 ENSP00000329638/1-1349 FSPDEIDKYK ILQLQAQQHM QKQLLSKHLR VLPAAGPTAF SPASTVQTVP ENSBTAP00000056619/1-1348 YSPDEIDKYK LLQLQAQQHM QKQLLSKHLR VLPAAGPTAF SSASTVQTVP ENSTTRP00000004130/1-1347 FSPDEIDKYK LLQLQAQQHM QKQLLSKHLR VVPAAGPTAF SPASAIQTVP bmy_20351T0/1-1269 FSPDEIDKYK LLQLQAQQHM QKQLLSKHLR VVPAAGPTAF SPASAVQTVP BACU018886/1-1311 FSPDEIDKYK LLQLQAQQHM QKQLLSKHLR VVPAAGPTAF SPASAVQTVP 1201 1250 ENSP00000329638/1-1349 VHQHTSITTI HHTFLQHFAV SASLSSHSSH LPIAHLHPLS QAHFSPISFS ENSBTAP00000056619/1-1348 GHQQASITTI HHTFLQHI-V SASINAHSSH LPIAHLHPLS QPRFNPFTFS ENSTTRP00000004130/1-1347 GHQQASLTTI HHTFLQHF-V SASINAHSSH LPIAHLHPLS QPHFNPFSFS bmy_20351T0/1-1269 GHQQASITTI HHTFLQHF-V SASINAHSSH LPIAHLHPLS QPHFNPFTFS BACU018886/1-1311 GHQQASITTI HHTFLQHF-V SASINAHSSH LPIAHLHPLS QPHFNPFTFS 1251 1300 ENSP00000329638/1-1349 TLTPTIIPAH PTFLAGHPLH LVAATPFHPS HITLQPLPPT AFIPTLFGPH ENSBTAP00000056619/1-1348 PLTPTIIPAH PTFLAGHPLH LVTTAPFHPS HITFQPLPPA AFIPTLFGPH ENSTTRP00000004130/1-1347 TLTPTIIPAH PTFLAGHPLH LVTAAPCHPS HITLQPLPPA AFIPTLFGPH bmy_20351T0/1-1269 PLTPTIIPAH PTFLAGHPLH LVTATPCHPS HITLQPLPPA AFIPTLFGPH BACU018886/1-1311 PLTPTIIPAH PTFLAGHPLH LVTATPCHPS HITLQPLPPA AFIPTLFGPH 1301 1350 ENSP00000329638/1-1349 LNPATTSIIH LNPLIQPVFQ GQDFCHHSCS SQMQQLNEVK EALNVSTHLN ENSBTAP00000056619/1-1348 FNPATTSIIH LNPLIQPVFQ GQDLCHHSCS SQMQPLNGVK EALNVSARLN ENSTTRP00000004130/1-1347 FNPATTSIIH LNPLIQPLFQ GQDLCHHSCS SQMQPLNGVK EALNVSAHLN bmy_20351T0/1-1269 FNPATTSIIH LNPLIQPLFQ GQDLCHHSCS SQMQPLNGVK EALNVSAHLN BACU018886/1-1311 FNPATTSIIH LNPLIQPLFQ GQDLCHHSCS SQMQPLNGVK EALNVSAHLN