KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:28:57 2014 Check: 00 .. Name: ENSTTRP00000007711/1-182 Len: 657 Check: 5673 Weight: 1.00 Name: ENSP00000349577/1-600 Len: 657 Check: 1467 Weight: 1.00 Name: ENSBTAP00000056646/1-533 Len: 657 Check: 9280 Weight: 1.00 Name: bmy_02433T0/1-367 Len: 657 Check: 323 Weight: 1.00 Name: BACU017084/1-539 Len: 657 Check: 8230 Weight: 1.00 // 1 50 ENSTTRP00000007711/1-182 RGCCRG-WTS W--------- ---------- ---------- ---------- ENSP00000349577/1-600 MALRRALPAL RPCIPRFVPL STAPASREQP AAGPAAVPGG GSATAVRPPV ENSBTAP00000056646/1-533 MGLRRTSWMH FSALCRRAPL STAPAAREQP AAGPGAEPVC GPAETARPPV bmy_02433T0/1-367 --MRSGAWTV T--------- ---------- ---------- ---------- BACU017084/1-539 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007711/1-182 ---------- ---------- ---------- ---------- ---------- ENSP00000349577/1-600 PAVDFGNAQE AYRSRRTWEL ARSLLVLRLC AWPALLARHE QLLYVSRKLL ENSBTAP00000056646/1-533 PAVDFGNTQE AYRSRRSWEL ARSLLVLSLC ASPALLARHE QLLHLARKLL bmy_02433T0/1-367 ---------- ---------- ---------- ---------- -LLRLARRLL BACU017084/1-539 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000007711/1-182 ---------- ---------- -------PRS RTRDCWGGGH PCHPGPRQTL ENSP00000349577/1-600 GQRLFNKLMK MTFYGHFVAG EDQESIQPLL RHYRAFGVSA ILDYGVEEDL ENSBTAP00000056646/1-533 GQRLFNTLMK MTFYGQFVAG EDQESIRPLI QHNRAFGVGS ILDYGVEEDL bmy_02433T0/1-367 GQRLFDRLMK MTFYGQFVAG EDQESIRPLI QHNRAFGVGS ILDYGVEEDL BACU017084/1-539 --------MK MTFYGQFVAG EDQESIRPLI QHNRAFGVGS ILDYGVEEDL 151 200 ENSTTRP00000007711/1-182 SPR------- ---------- ---------- ---------- ---------- ENSP00000349577/1-600 SPEEAEHKEM E--------- ---------- ---------- ---------- ENSBTAP00000056646/1-533 TPEEAERTEM E--------- ---------- ---------- ---------- bmy_02433T0/1-367 TPEEAERKEM E--------- ---------- ---------- ---------- BACU017084/1-539 TPEEAERKEM EWAPPGGCGD CLGVREEGNV LPGAHVWQAS PAAPAEVTNW 201 250 ENSTTRP00000007711/1-182 ---------- ---------- ---------- ---------- ---------- ENSP00000349577/1-600 --------SC TSAAERDGSG TNKRDKQYQA HWAFGDRRNG VISARTYFYA ENSBTAP00000056646/1-533 --------SC SSALERDGCG VSKREKQFQA HRAFGDRRDG VTSARTYFYA bmy_02433T0/1-367 --------SC TSASERDGHG TSKREKQFQA HRAFGDRRDG VVSARTYFYA BACU017084/1-539 LQGPFSGQSC TSASERDGHG TSKREKQFQA HRAFGDRRDG VVSARTYFYA 251 300 ENSTTRP00000007711/1-182 ---------- ---------- ---------- ---------- ---------- ENSP00000349577/1-600 NEAKCDSHME TFLRCIEASG RVSDDGFIAI KLTALGRPQF LLQFSEVLAK ENSBTAP00000056646/1-533 SEAKCDSHME TFLHCIEASG GASEDGFSAI KLTALGRPQF LLQFSDMLTK bmy_02433T0/1-367 SEAKCDSHME TFLRCIEASG GASEDGFSAI KLTALGRPQF LLQFSDVLTK BACU017084/1-539 NEAKCDSHME TFLRCIEASG GASEDGFSAI KLTALGRPQF LLQFSDVLTK 301 350 ENSTTRP00000007711/1-182 ---------- ---------- ---------- ---------- ---------- ENSP00000349577/1-600 WRCFFHQMAV EQGQAGLAAM DTKLEVAVLQ ESVAKLGIAS RAEIEDWFTA ENSBTAP00000056646/1-533 WRRFFHHVAA EQGKAGLAAV DTKLEVAALQ ESVVKMGIAS RAEIEDWFTA bmy_02433T0/1-367 WRRFFHQMAA EQGKAGLAAM DTKLEVAALQ ESVVKMGIAS RMEIENWFTV BACU017084/1-539 WRRFFHQMAA EQGKAGLAAM DTKLEVAALQ ESVVKMGIAS RMEIENWFTV 351 400 ENSTTRP00000007711/1-182 ---------- ---------- ---------- ---------- ---------- ENSP00000349577/1-600 ETLGVSGTMD LLDWSSLIDS RTKLSKHLVV PNAQTGQLEP LLSRFTEEEE ENSBTAP00000056646/1-533 ETLGVSGTLD LLDWCSLIDS RTELSRHLVV PNMQTGRLEP LLSQFTEEEE bmy_02433T0/1-367 ETLGVSGTLD LLDWGSLIDS KTELSKHLVV PNMQMRPTGP ------GHQA BACU017084/1-539 ETLGVSGTLD LLDWGSLIDS RTELSKHLVV PNMQTGQLEP LLSRFTEEEE 401 450 ENSTTRP00000007711/1-182 ---------- -RAPQKASEV GVR------- ---LMVDAEQ TYFQPAISRL ENSP00000349577/1-600 LQMTRMLQRM DVLAKKATEM GVR------- ---LMVDAEQ TYFQPAISRL ENSBTAP00000056646/1-533 RQMTRMLQRM DVLAKKANQV GVR------- ---LMVDAEQ TYFQPAISRL bmy_02433T0/1-367 LGIGRPCTRG ERVPTGGGSA GLESPGLEPC RGLTALPPQT GQLEPLLSRF BACU017084/1-539 RQMTRMLQRM DVLAKKASEV GVR------- ---LMVDAEQ TYFQPAISRL 451 500 ENSTTRP00000007711/1-182 TLEMQRRFNV ERPLIFNTYQ CYLKXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000349577/1-600 TLEMQRKFNV EKPLIFNTYQ CYLKDAYDNV TLDVELARRE GWCFGAKLVR ENSBTAP00000056646/1-533 TLEMQRRFNV ERPLIFNTFQ CYLRDAYDNV ILDVELARRE GWCFGAKLVR bmy_02433T0/1-367 TEEEERQMT- -RML------ -----QRMDV LAKVE---DP GMCRGG---- BACU017084/1-539 TLEMQRRFNV ERPLIFNTYQ CYLKDAYDNV TLDVELARRE GWCFGAKLVR 501 550 ENSTTRP00000007711/1-182 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCLNYVLE ELKHNARAAV ENSP00000349577/1-600 GAYLAQERAR AAEIGYEDPI NPTYEATNAM YHRCLDYVLE ELKHNAKAKV ENSBTAP00000056646/1-533 GAYMAQ---- ---VGYEDPI NPTYEATSAV YHRCLDYVLE ELKHNARAAV bmy_02433T0/1-367 GAPVSPEPQ- ------TDPL SP-------- ---------- ---------- BACU017084/1-539 GAYMAQERAR ALEIGYEDPI NPTYEATNAM YHRCLNYVLE ELKHNARAAV 551 600 ENSTTRP00000007711/1-182 MVASHNEDTV RFTLCRL--- ---------- ---------- ---------- ENSP00000349577/1-600 MVASHNEDTV RFALRRMEEL GLHPADHRVY FGQLLGMCDQ ISFPLGQAGY ENSBTAP00000056646/1-533 MVASHNEDTV RFTLRRMEEL GLHPADRQVY FGQLLGMCDH ISFPLGE--- bmy_02433T0/1-367 ---------- ---LC----- ---PSESQ-- ---------- ---------- BACU017084/1-539 MVASHNEDTV RFTLCRMEEL GLHPADCQVY FGQLLGMCDQ ISFPLGQAGF 601 650 ENSTTRP00000007711/1-182 ---------- ---------- ---------- ---------- ---------- ENSP00000349577/1-600 PVYKYVPYGP VMEVLPYLSR RALENSSLMK GTHRERQLLW LELLRRLRTG ENSBTAP00000056646/1-533 ---------- ---------- ---------- ---------- ---------- bmy_02433T0/1-367 ---------- ---------- ---------- ---------- ---------- BACU017084/1-539 PVYKYVPYGP VMEVLPYLSR RALENSGVMK GAQREWQLLW QELKRRLRTG 651 700 ENSTTRP00000007711/1-182 ------- ENSP00000349577/1-600 NLFHRPA ENSBTAP00000056646/1-533 ------- bmy_02433T0/1-367 ------- BACU017084/1-539 SLFHRPA