Part of scaffold_0 (Scaffold)

For more information consult the page for scaffold_0 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PTCHD4 ENSTTRG00000004156 (Bottlenosed dolphin)

Gene Details

patched domain containing 4

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003910, Bottlenosed dolphin)

Protein Percentage 90.79%
cDNA percentage 90.65%
Ka/Ks Ratio 0.28203 (Ka = 0.0296, Ks = 0.1051)

MGC148542 ENSBTAG00000021415 (Cow)

Gene Details

patched domain-containing protein C6orf138 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000028550, Cow)

Protein Percentage 94.46%
cDNA percentage 93.06%
Ka/Ks Ratio 0.16751 (Ka = 0.0338, Ks = 0.202)

PTCHD4  (Minke Whale)

Gene Details

patched domain containing 4

External Links

Gene match (Identifier: BACU015841, Minke Whale)

Protein Percentage 99.22%
cDNA percentage 99.15%
Ka/Ks Ratio 0.19828 (Ka = 0.003, Ks = 0.015)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2409 bp    Location:626044..808551   Strand:+
>bmy_00001
ATGTATTTCTTATTACTGATTACACATCCACCTGGTGCCATATCCACCTATTTACATCTTCAACCTGGCTTGATTTTGACATGTAGGGAGTTTGTGCTTCGCTGCCCTGATGGGAGGAACAGTTTTATTGGACACCAACTGGGCGGGGTAGTGGAAGTGCCAAACAGCAAGGACCAGCGGGTCAAGTCAGCCAGAGCCATTCAAATCACCTACTACCTCCAGACCTATGGCTCTGCCACCCAAGACCTCATAGGGGAGAAGTGGGAGAATGAGTTCTGTAAGCTTATGAGGAAGCTCCAGGAGGAGCACCAGGACCTCCAGCTATACTCCTTAGCATCCTTTAGCCTCTGGAGAGACTTTCATAAGACCAGCATCCTGGCCAGAAGCAAGGTCCTCGTGAGCCTTGTGCTGATCCTGACCACAGCCACCCTCTCCAGCTCCATGAAGGACTGCTTGCGCGGCAAGCCCTTCCTGGGCCTCCTGGGGGTGCTCACCGTGTGCATCTCCATCGTCACCRCAGCTGGGATCTTCTTCATCACCGACGGAAAGTACAACTCCACCCTGCTGGGAATCCCGTTCTTTGCCATGGATTCCTGTGATGCTGTTCTCTCTTCCAAAGAGGCTTGTGTTTGCATCTGTCTGGCACCTGTGGACACTTATGATTGGAAACATCTCAAATGTAGTTCCCAACTTGAGGATCCTTGCTCCATCCAGACTATGGAGCAGTTCTTTAAAACTCAGTCACCTGGAAATCTTCCAGTGCGTGTGTGCTTAGGTCACGGAACGAAAGGAGTATTTGAGCTTCTGTCTGGATGGCGGAGAACCAAAGAGAATTTGCCCTTCAAAGACAGGGTAGCAGATGCCTATTCGGATGTGATGGTGACCTATACCATGACCAGCTCCCTGTACTTTATTACCTTTGGCATGGGTGCCAGCCCGTTCACCAACATAGAGGCTGTGAAGGTCTTCTGTCAGAACATGTGTGTCTCCATCCTGTTGAACTACTTCTACATTTTCTCCTTCTTTGGCTCCTGTCTGGTCTTCGCTGGCCAACTAGAGCAAAACCGCTACCACAGCATCTTTTGCTGTAAGATCCCTTCTGCAGAATACCTGGACCGCAAGCCTGTGTGGTTCCAGACAGTGATGAGTGATGGGCATCAACAGACATCCCATCATGAGACAAACCCCTACCAGCACCACTTTATTCAGCACTTCCTCCGTGAACATTACAATGAATGGATTACCAATATCTACGTGAAGCCATTTGTTGTCATCCTCTATCTCATCTATGCCTCCTTCTCCTTCATGGGGTGCTTGCAGATCAGTGACGGAGCCAACATCATCAATCTACTAGCCAGTGATTCCCCAAGCGTCTCTTATGCCATGGTTCAGCAGAAATATTTCAGCAACTACAGCCCCGTGATAGGATTCTATGTCTACGAGCCCCTCGAGTACTGGAACAGCAGTGTCCAGCAGGACCTCCGGAGACTCTGCAGCGGATTCACTGCAGTGTCCTGGGTGGAGCAATATTACCAGTTCCTGAAAGTGAGTAACATCAGTGCCAATAACAAGAGTGACTTCATCAGTGTCCTACAAAGTTCATTTTTAAAAAAGCCAGAATTCCAGCATTTTCGAAACGATATCATCTTCTCCAAGGCAGGAGATGAAAACAGCATCATTGCTTCTCGCTTGTATCTGGTGGCCAGGACTAGCAGAGACAAGCAGAAGGAAGTCATAGAAGTGCTGGAAAAGTTGAGGCCCCTGTCCCTGTCAAAGAGCATCCGTTTCATCGTGTTCAACCCCTCCTTTGTGTTCATGGACCATTACAGCTTATCTGTCACAGTGCCTGTTCTGATTGCAGGCTTTGGTGTTCTCCTGGTGTTAATCCTGACTTTTTTCCTAGTGATCCACCCTCTGGGAAACTTCTGGCTAATTCTTAGCGTCACCTCAATTGAGCTGGGCGTTCTGGGCTTAATGACATTATGGAACATCGACATGGATTGCATTGCTATCTTGTGCCTTATCTACACTTTAAATTTCGCCATTGACCACTGTGCACCACTGCTTTACACGTTTGTATTAGCAACTGAGCACACCCGAACACAATGTATAAAAAGCTCCCTGCAAGAGCATGGGACAGCCATTTTGCAAAATGTTACTTCTTTTCTTATTGGGTTGGTCCCCCTCCTATTTGTGCCTTCGAACCTGACCTTCACACTGTTCAAATGCTTGCTGCTCACTGGGGGTTGCACACTTCTGCACTGTTTTGTTATCTTACCTGTGTTCCTAACCTTTTTYCCCCCTTCCAAAAAGCACCACAAGAAAAARAAACGYGCCAAACGGAAGGAGAGAGAGGAAATCGAATGCATAGAARTTCAAGAGAACCCTGATCACGTCACCACAGTCTGA

Related Sequences

bmy_00001T0 Protein

Length: 803 aa      View alignments
>bmy_00001T0
MYFLLLITHPPGAISTYLHLQPGLILTCREFVLRCPDGRNSFIGHQLGGVVEVPNSKDQRVKSARAIQITYYLQTYGSATQDLIGEKWENEFCKLMRKLQEEHQDLQLYSLASFSLWRDFHKTSILARSKVLVSLVLILTTATLSSSMKDCLRGKPFLGLLGVLTVCISIVTXAGIFFITDGKYNSTLLGIPFFAMDSCDAVLSSKEACVCICLAPVDTYDWKHLKCSSQLEDPCSIQTMEQFFKTQSPGNLPVRVCLGHGTKGVFELLSGWRRTKENLPFKDRVADAYSDVMVTYTMTSSLYFITFGMGASPFTNIEAVKVFCQNMCVSILLNYFYIFSFFGSCLVFAGQLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQHFLREHYNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGANIINLLASDSPSVSYAMVQQKYFSNYSPVIGFYVYEPLEYWNSSVQQDLRRLCSGFTAVSWVEQYYQFLKVSNISANNKSDFISVLQSSFLKKPEFQHFRNDIIFSKAGDENSIIASRLYLVARTSRDKQKEVIEVLEKLRPLSLSKSIRFIVFNPSFVFMDHYSLSVTVPVLIAGFGVLLVLILTFFLVIHPLGNFWLILSVTSIELGVLGLMTLWNIDMDCIAILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKSSLQEHGTAILQNVTSFLIGLVPLLFVPSNLTFTLFKCLLLTGGCTLLHCFVILPVFLTFFPPSKKHHKKKKRAKRKEREEIECIEXQENPDHVTTV*