Part of scaffold_0 (SequenceType object (1))

For more information consult the page for scaffold_0 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

OPN5ENSTTRG00000004153 (Bottlenosed dolphin)

Gene Details

opsin 5

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000003905, Bottlenosed dolphin)

Protein Percentage 95.43%
cDNA percentage 94.67%
Ka/Ks Ratio 0.27536 (Ka = 0.034, Ks = 0.1236)

OPN5ENSBTAG00000016499 (Cow)

Gene Details

opsin-5

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000055116, Cow)

Protein Percentage 92.78%
cDNA percentage 92.9%
Ka/Ks Ratio 0.28673 (Ka = 0.0469, Ks = 0.1634)

OPN5 (Minke Whale)

Gene Details

opsin 5

External Links

Gene match (Identifier: BACU015840, Minke Whale)

Protein Percentage 96.58%
cDNA percentage 96.96%
Ka/Ks Ratio 0.48889 (Ka = 0.0255, Ks = 0.0522)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence SequenceType object (2)

Length: 792 bp    Location:886865..875614   Strand:-
>bmy_00002
ATGGCTTTGAACCACACGGCTCCGGCCCTGGATGAGCGCCTGCCGTACTACCTTCGGGAGGGGGATCCCTTTGCTTCCAAACTTTCATGGGAAGCGGATTTAGTGGCTGGCTTTTACTTAACAATCATTGGGATTCTGTCCACATTTGGAAATGGGTATGTCCTTTATATGTCTTCTAGACGAAAAAAGAAGCTGAAACCTGCGGAAATAATGACTATCAATTTAGCAATCTGTGATCTGGGGATTTCAGTTGTAGGCAAACCGTTCACCATCATCTCTTGCTTCTGTCACCGCTGGGTGTTTGGCTGGATTGGCTGCCGCTGGTATGGATGGGCTGGATTTTTCTTTGGCTGTGGAAGTCTTATCACTATGACTGCTGTCAGCCTGGACCGATACTTGAAAATCTGCTATTTATCGTATGGGGTTTGGCTGAAAAGAAAGCACGCCTACATCTGCCTGGCCGTCATCTGGGCCTATGCTTCCTTCTGGACCACCATGCCCTTGGTAGGTCTGGGGGACTACGCACCTGAGCCCTTCGGAACCTCGTGCACTCTGGACTGGTGGCTGGCCCAGGCCTCAGTAGGGGGCCAGATTTTCATCCTGAACATCCTCTTCTTCTGCCTCTTGCTCCCAACGGCTGTGATCGTGTTCTCCTATGTGAAGATCATTGCTAAGGTTAAGTCCTCCTCCAAAGAAGTAGCTCATTTTGACAGTCGGATCCATAGCAGCCATGTGCTGGAAATGAAACTGACCAAGGTAACTGCAGTCATAATTTACCAACATGTTTTCTAA

Related Sequences

bmy_00002T0 SequenceType object (3)

Length: 264 aa      View alignments
>bmy_00002T0
MALNHTAPALDERLPYYLREGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKKKLKPAEIMTINLAICDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAVIWAYASFWTTMPLVGLGDYAPEPFGTSCTLDWWLAQASVGGQIFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVTAVIIYQHVF*