Sequence detailsbmy_00007 (Coding sequence)

Part of scaffold_0 (SequenceType object (1))

For more information consult the page for scaffold_0 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TNFRSF21ENSTTRG00000006613 (Bottlenosed dolphin)

Gene Details

tumor necrosis factor receptor superfamily, member 21

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000006257, Bottlenosed dolphin)

Protein Percentage 92.66%
cDNA percentage 93.32%
Ka/Ks Ratio 0.37857 (Ka = 0.0525, Ks = 0.1388)

TNFRSF21ENSBTAG00000020054 (Cow)

Gene Details

tumor necrosis factor receptor superfamily member 21

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000026719, Cow)

Protein Percentage 84.62%
cDNA percentage 86.24%
Ka/Ks Ratio 0.32028 (Ka = 0.1106, Ks = 0.3454)

TNFRSF21 (Minke Whale)

Gene Details

tumor necrosis factor receptor superfamily, member 21

External Links

Gene match (Identifier: BACU015837, Minke Whale)

Protein Percentage 89.12%
cDNA percentage 90.99%
Ka/Ks Ratio 0.56798 (Ka = 0.0843, Ks = 0.1484)

Additional orthologs identified in other species via the OPTIC pipeline.

TNFRSF21 (Human)   Tnfrsf21 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1629 bp    Location:1223692..1257106   Strand:+
Raw sequence 
>bmy_00007
ATGTCATTAGGCACCAACATGATGAACAGAAGAAACAGGAAATGCGATGAAGAGTTTGATCGTCGGCTTGGAATCTGGGTGTCTAGGAATGGTTGTAAAGGCTTCATAGAGAAGCTTGGATTCCTCAGTACCACCAGGGCTCAGCCGGAACAGAAGGCCCCAAGTCTCATTGGCAAATACCACCATGTCGACCGTGTCACCGGCCAGGTGCTTACCTGTGACAAGTGTCCGGCAGGAACCTATGTGTCTGAGCACTGTACCAACACAAGCCTGCGTGTCTGCAGCAGCTGCCCCATGGGGACCTTTACCAGACACGAGAATGGCATTGAGAAATGCCACGGGTGTAGTCAGCCATGCCCCTGGCCGATGATTGAGAAATTACCTTGTGCTGCCTTGACTGACCGAGAATGCACTTGCCCACCTGGCATGTTCCAGTCAAATGGTACCTGCGCCCCCCACACGGTGTGCCCTGTGGGTTGGGGGGTGCGGAAGAAGGGGACAGAGATGGAGGACGTACGGTGTAAGCAGTGTGCTCGGGGGACCTTCTCTGATGTGCCTTCCAGTGTGAGGAGATGCAGAGCATACACAGACTGTCTGAGTCAGAACCTGGCGGTGATCAGGCTGGGGACCAAGGAGGCAGACAACGTCTGTGGCACGCTCCCGCCCCTCTCCAGCACCACCCCTCCTTCCCCTGGCACAATCAGCCTTTCCCGCCCTGAGCACGTGGAACCCCACGAAGTCCCTTCCTCCACTTATGTTCCCAAAGGCATGAACTCAACAGAATCCAACTCTTCTGCCTCTGTTAGACCAAAGGTGCCGAGTGGCATCCAGGAAGGGACAGTCCCTGAGAACACAAGCTCAGCGAAGGGGGAGGAAGGCATGAACAAGACCCTCCCAAACCTCCAGGTAGTCAACCACCAGCAAGGCCCCCACCACAGACACATCCTGAAGCTGCTGCCATCCATGGAGGCCACTGGGGGCGAGAAGTCCAGCACGCCCATCAAAGGCCTCAAGAGGGGCCATCCCAGGCAGAACCCRCACAAGCATTTTGACATCAATGAGCATCTGCCGTGGATGATCGTGCTTTTCCTGCTGCTGGTGCTTGTGGTGATAGTGGTGTGCAGTATCCGGAAAAGCTCGAGGACTCTGAAGAAGGGGCCCCGGCAGGATCCCAGCACCATTGTGGAAAAGGCGGGGCTCAAGAAATCCATGACCCCCACCCAGAACCGGGAGAAGTGGATCTACTACTGCAATGGCCACGGTATTGACATCCTGAAGCTTGTAGCAGCCCAAGTGGGAAGCCAGTGGAAGGACATCTATCAGCTTCTGTGCAATGCCAGCGAGAGGGAGGTGGCCGCTTTCTCCAACGGGTACACGGCGGACCACGAGCGGGCCTACGCAGCGCTGCAGCACTGGACCATCCGGGGCCCCGAGGCCAGCCTGGCCCAGTTAATTAGCGCCCTGCGCCAGCACCGGCGCAACGATGTCGTGGAGAAGATCCGTGGCCTGATGGAAGATACAGCCCAGCTGCAGGATGCAGCTGTCTTTATCTACAGTGTGACTGAGACCAGCTCTTTTCAGAATTTAATACAGCGAGGAGGAACTTTGATTTATCCACAGTTGGGCTGA

Related Sequences

bmy_00007T0 SequenceType object (3)

Length: 543 aa      View alignments
>bmy_00007T0
MSLGTNMMNRRNRKCDEEFDRRLGIWVSRNGCKGFIEKLGFLSTTRAQPEQKAPSLIGKYHHVDRVTGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPMGTFTRHENGIEKCHGCSQPCPWPMIEKLPCAALTDRECTCPPGMFQSNGTCAPHTVCPVGWGVRKKGTEMEDVRCKQCARGTFSDVPSSVRRCRAYTDCLSQNLAVIRLGTKEADNVCGTLPPLSSTTPPSPGTISLSRPEHVEPHEVPSSTYVPKGMNSTESNSSASVRPKVPSGIQEGTVPENTSSAKGEEGMNKTLPNLQVVNHQQGPHHRHILKLLPSMEATGGEKSSTPIKGLKRGHPRQNPHKHFDINEHLPWMIVLFLLLVLVVIVVCSIRKSSRTLKKGPRQDPSTIVEKAGLKKSMTPTQNREKWIYYCNGHGIDILKLVAAQVGSQWKDIYQLLCNASEREVAAFSNGYTADHERAYAALQHWTIRGPEASLAQLISALRQHRRNDVVEKIRGLMEDTAQLQDAAVFIYSVTETSSFQNLIQRGGTLIYPQLG*