Part of scaffold_0 (Scaffold)

For more information consult the page for scaffold_0 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

POLR1C ENSTTRG00000006344 (Bottlenosed dolphin)

Gene Details

polymerase (RNA) I polypeptide C, 30kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006004, Bottlenosed dolphin)

Protein Percentage 76.99%
cDNA percentage 76.99%
Ka/Ks Ratio 0.2584 (Ka = 0.0189, Ks = 0.0732)

POLR1C ENSBTAG00000018969 (Cow)

Gene Details

DNA-directed RNA polymerases I and III subunit RPAC1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000025246, Cow)

Protein Percentage 97.08%
cDNA percentage 92.81%
Ka/Ks Ratio 0.04666 (Ka = 0.0136, Ks = 0.2909)

POLR1C  (Minke Whale)

Gene Details

polymerase (RNA) I polypeptide C, 30kDa

External Links

Gene match (Identifier: BACU015806, Minke Whale)

Protein Percentage 99.42%
cDNA percentage 98.93%
Ka/Ks Ratio 0.11374 (Ka = 0.003, Ks = 0.0263)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1032 bp    Location:4410266..4399751   Strand:-
>bmy_00046
ATGGCGGCGGCCCAGGCAGTGGAGGAAATGCGGAGCCGCGTGGTTTTAGGGGAGTTCGGGGTTCGCAATGTTCATACCACCGACTTTCCCGGTAACTATTCGGGCTACGATGATGCCTGGGACCAGGACCGCTTCGAAAAGAATTTCCGCGTGGATGTGGTACACATGGATGAAAACTCATTGGAGTTTGACATGGTGGGAATCGACGCAGCCATTGCCAATGCTTTTCGACGCATTCTATTAGCTGAGGTGCCAACCATGGCTGTGGAGAAGGTCCTGGTGTACAACAACACTTCCATTGTCCAGGATGAGATCCTCGCTCACCGCTTGGGGCTCATCCCCATTCATGCTGATCCCCGCCTTTTTGAATATCGGAACCAAGAAGGCACAGAGATAGATACCCTGCAGTTTCGGCTGCAGGTCAGGTGCGCTCGGAACCCCCACGCCGCTAAAGATTCCTCTGACCCCAATGAGCTCTATGTCAACCACAAAGTGTACACCAGGCACATGACATGGGTCCCCCTGGGGAACCAGGCTGACCTTTTCCCGGAGGGCACCATCCGACCGGTACATGACGATATCCTCATCGCTCAGCTGCGGCCTGGCCAGGAGATTGACCTGCTCATGCACTGCGTCAAGGGCATTGGCAAAGATCATGCCAAGTTTTCACCTGTGGCAACAGCCAGTTACCGGCTCCTGCCGGACATCACCCTGCTTGAGCCCGTGGAAGGGGATGCGGCTGAGGAGCTGAGCCGGTGCTTCTCACCTGGTGTTATTGAGGTGCAAGAAGTCCAAGGTAAAAAGGTGGCCAGAGTTGCCAATCCCCGGCTAGATACCTTCAGCAGGGAGGTCTTCCGGAATGAGAAGCTAAAGAAGGTTGTACGGCTTGCTCGTGTTCGGAACCATTACATCTTCTCTGTTGAGTCAACAGGGGTGTTGCCACCAGACGTGCTGGTGAGTGAAGCCATCAAGGTACTGATGGGGAAGTGCCGGCGGTTCTTGGATGAACTGGATGCGGTTCAGATGGATTGA

Related Sequences

bmy_00046T0 Protein

Length: 344 aa      View alignments
>bmy_00046T0
MAAAQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQEGTEIDTLQFRLQVRCARNPHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREVFRNEKLKKVVRLARVRNHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAVQMD*