Part of scaffold_0 (Scaffold)

For more information consult the page for scaffold_0 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TJAP1 ENSTTRG00000006339 (Bottlenosed dolphin)

Gene Details

tight junction associated protein 1 (peripheral)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005998, Bottlenosed dolphin)

Protein Percentage 94.71%
cDNA percentage 96.03%
Ka/Ks Ratio 0.44571 (Ka = 0.0313, Ks = 0.0703)

TJAP1 ENSBTAG00000011189 (Cow)

Gene Details

tight junction-associated protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000035843, Cow)

Protein Percentage 88.59%
cDNA percentage 88.59%
Ka/Ks Ratio 0.18248 (Ka = 0.0665, Ks = 0.3642)

TJAP1  (Minke Whale)

Gene Details

tight junction associated protein 1 (peripheral)

External Links

Gene match (Identifier: BACU015804, Minke Whale)

Protein Percentage 95.49%
cDNA percentage 96.91%
Ka/Ks Ratio 0.78014 (Ka = 0.03, Ks = 0.0384)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1137 bp    Location:4444161..4420341   Strand:-
>bmy_00049
ATGTCTCTCTTCCCTTCTCTCGCTCCTTTACCCCAGCTGCCCTGTGAGCTACAGGACATGGTTCGGAAACATCTGCACAGTGGTCAGGAGGCTACCAGCCCGGGGCCTGCCTCCAGCCTGGCCCCAGGGGCTGTGGTGCCCACCTCGGTCATTGCCCGCGTGTTGGAGAAGCCGGAGTCTCTTCTGCTCAATTCGGCCCAGTCAGGCAGCGCCGGGCACCCCCTGGCTGAGGATGTCTTTGTGCACGTGGATATGAGTGGGAGTGACCCAGGTGACCCAGCCAGCCCCCCAGCTCCGGGAAGCCCTGTCCCCCAACCCAACGGGGAGTGCTGCTCTCTGGGCACCGCGGGGAGCTCCCCAGAGGAGGAGATGTCCCTGCCGGCCTTTGAGAAGCTGAGCCCCTACCCCACCCCGTCTCCGCCCCACCCACTGTATCCTGGCCGCAAGGTGATAGAATTCTCTGAGGATAAGGTGCGGATTCCCCGCAACAGCCCCCTGCCCAACTGCACTTACGCCACCCGCCAGGCCATCTCCCTGAGCCTGGTGGAGGAGGGCAGTGAGCGAGCCCGCCCCAGCCCAGTGCCCAGCAGCCCTGCCTCGGCCCAGGCCTCCCCGCAGCACCAGCCCAGCCCCGCCCCCTCGGGGCTTAGTGCCCCGGCCAGCTCTGCCAGCTCCGAGGAGGACCTGCTGGCCAGCTGGCAGCGGGCGTTTGTGGACCGCACTCCGCCCCCGGCCACTGTGGCCCAGCGCACAGCCTTTGGACGTGACGCGCTCCCTGAACTGCAGCGCCACTTTGCTCTCGGTCCCGCTGGCGGAGATGAGGAGGTGCAGGCACCTTCTTCCCCACCCGGTGAAAGTGGGCTTTTGCTGCCAACAGAAGCTGACCCTGGCTTTCCCAGGGAGGAGGAAGAGGAACAGCTGAACCTGCCCATCAGCCCCGAGGAAGAGCGCCAGAGCCTGCTGCCCAGTGATGGTGGCACAGAGGAGGGGCCTGGCACTCCTCGCACTGAGGGCAGGGCCTGGGCACTCCCCAGCTCCGGCCGCCCCCAGCGCAGCCCCAAGAGGATGGGGGTGCACCACCTGCACCGCAAGGACAGCCTGACCCAGGCCCAGGAGCAGGGCAACCTGCTCAACTAG

Related Sequences

bmy_00049T0 Protein

Length: 379 aa      View alignments
>bmy_00049T0
MSLFPSLAPLPQLPCELQDMVRKHLHSGQEATSPGPASSLAPGAVVPTSVIARVLEKPESLLLNSAQSGSAGHPLAEDVFVHVDMSGSDPGDPASPPAPGSPVPQPNGECCSLGTAGSSPEEEMSLPAFEKLSPYPTPSPPHPLYPGRKVIEFSEDKVRIPRNSPLPNCTYATRQAISLSLVEEGSERARPSPVPSSPASAQASPQHQPSPAPSGLSAPASSASSEEDLLASWQRAFVDRTPPPATVAQRTAFGRDALPELQRHFALGPAGGDEEVQAPSSPPGESGLLLPTEADPGFPREEEEEQLNLPISPEEERQSLLPSDGGTEEGPGTPRTEGRAWALPSSGRPQRSPKRMGVHHLHRKDSLTQAQEQGNLLN*