Part of scaffold_0 (Scaffold)

For more information consult the page for scaffold_0 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRERF1 ENSTTRG00000014065 (Bottlenosed dolphin)

Gene Details

transcriptional regulating factor 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013342, Bottlenosed dolphin)

Protein Percentage 84.39%
cDNA percentage 84.16%
Ka/Ks Ratio 0.13728 (Ka = 0.0069, Ks = 0.0503)

TRERF1 ENSBTAG00000015321 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000020376, Cow)

Protein Percentage 94.36%
cDNA percentage 93.59%
Ka/Ks Ratio 0.12786 (Ka = 0.027, Ks = 0.2112)

TRERF1  (Minke Whale)

Gene Details

transcriptional regulating factor 1

External Links

Gene match (Identifier: BACU017985, Minke Whale)

Protein Percentage 98.92%
cDNA percentage 98.67%
Ka/Ks Ratio 0.12795 (Ka = 0.005, Ks = 0.0388)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3624 bp    Location:5405429..5443622   Strand:+
>bmy_00079
ATGGGGGATCAGCAACTGTACAAGACCAATCACGTGGCCCACGGTGGTGAGAACCTTTTCTACCAACAGCCACCACTTGGCGTCCACGGTGGGCTGAACCACAACTATGGGAATACAGTCCCCGGGGCTGGAATGGATGCCCCTCAGGCATCACCCATCTCCCCCCACTTCCCTCAAGACACTCGGGATGGTCTGGGCTTGCCTGTTGGCTCCAAAACGCTTGGCCAAGTGGACTCCTCAAGGCAGGGAGGGTGGGCAGGCCATGCAGGGCCTGGAAACCATGTCCAGCTACGTGGCAACCTGACCAACTCGAACATGATGTGGGGGTCTCCAGCCCAGGCGGAGCCCACCGATGGCTACCAGTACACCTACTCCCAGGCCAGCGAGATCCGGACCCAGAAGCTCACCAGYGGTGTCCTGCACAAGCTAGACTCTTTCACCCAGGTGTTTGCCAACCAAAACCTGCGAATTCAGGTCAACAATATGGCCCAGGTGCTGCACACCCAGTCAGCGGTGATGGACGGAGCCCCTGAAAGCGCCCTCCGCCAGTTGCTGTCCCAGAAGCCCATGGAGCCCCCAGCACCGGCTCTCCCTTCCCGCTACCAGCAGGTGCCCCAGCAGCCTCACCCTGGTTTTACTGGCGGGCTGTCCAAACCAGCTCTTCAGGTTGGGCCGCACCCAAGCCAAGGGCACCCGTATTATGACTACCAGCAGCCACTGGCCCAGATGCCAGTGCAGGGAGGACAGTCACTGCAGGCCCCCCAGATGCTGTCCCAGCACATGCAGCAGCTGCAGCAGCACCAGTATTACCCGCAGCAGCAACAGCAGCAAGCCGGGCAGCCGCGGATGTCAGTGCAAGAAATGCAGCCACAGCAGCAGCAGCAGATTCGCCCAGCGCAGCCCCAGCAGCTGCAGCAGCGGCAGGGTTCGATGCAGATACCTCAGTATTACCAGTCCTCACCCATGATGCAGCATTTGCCAGAGTCACGTCAGCCACAGATGCACCTGCAGCCCCCTTCTTATCACAGGGACCCCCACCAGTACACCCCGGAGCAGGCGCACGCTGTCCAGCTGATTCAGCTGGGCTCCGTGCCCCAGTACTACTACCAGGAGCCCCAGCAGCCCTACGGCCACCCCATGTACCAGCAGAGCCACCTGGCCCAGCACCAGCAGCCTGAGGACGGTCAGCCCAAGACTTATCCAAGCGACAGGCAGGCCCAGGCCATGCTGAGCTCCCATGGGGACCTGGGGCCTCCAGATACAGGAATGAGTGACCCGACAAGCTCGGACCTGAACAGGGTCAGCAGTGCGCTCCCCCACCGGCCGCTCCTGTCCCCCAGTGGCATCCACCTCAACAACATGGGGCCTCAGCACCAGCAGCCATCTCCCAGTGCCGTGTGGCCCCAGATGCACCTACCTGATGGCAGAGCCCAGCCAGGGTCCCCTGACTCAAGTGGCCAACCAAAAGGACTGTTTGGGGAGCAGTTTGATGCCAAGAACAAGCTGACATGCTCCATCTGCCTGAAGGAGTTCAAGAGTCTGCCTGCCCTGAACGGCCACATGCGGTCCCACGGGGGGATGAGGGCCTCCCCCAGCCTCAAACAGGAGGAAGGAGAGAAGGCCCCGGCGCCTCCGCCTCAGCCGCCACTGCCGCCTCCGCCTCCGCCACCACCGCAGCTCCCACCCGAGGCGGAAAGCCTCACGCCTATGGTCATGCCCGTGTCTGTCCCTGTCAAGCTTCTCCCRCCCAAGCCCAGCTCTCAGGGCTTCGCCAACAGCGTCGCTGCCGCCCCCTCAGCCAGAGACAAGCCAGCCAGCTCGATGTCGGACGACGAGATGCCCGTGCTCGTGAGGATGACCCTCTCTCCCCCACACTCACCCCAAGGGGCTGCCCCCCACCCGCCTGCTGAAATTCCCAAGAAGCATCAGCCAGGCTTGGCCAAAGCCGAGGAAGCACTCAAGACCGCGCCGGAGAAGAAGAAGTTCCGGCACCGGCCGGAGCCGCTCTTCATCCCGCCTCCGCCCTCCTACACCCCCAACCTCGCCGCCTCATACTCCGGCGCCACCCTGTACCAGAGCCAGCTGCGCTCCCCGCGCGTCCTGGGCGACCACCTGCTCCTCGACCCCTCCCACGAGCTGCCCCCCTACACGCCCCCGCCCATGCTCAGCCCGGTGCGCCAGGGTTCGGGGCTCTTCAGCAACGTGCTCATCTCCGGCCATGGCGCCGGTGCGCATCCGCAGCTGCCCCTCACGCCCCTCACGCCCACGCCTCGCGTGCTGCTCTGCCGCCCCAACAGCATCGATGGCAGCAACGTGACAGTCACCCCAGGGCCTGGAGAGCAGACCGTTGATGTCGAACCACGCATCAACATTGGCTTGAGATTCCAAGCGGAGATCCCAGAACTCCAGGATGTCTCTGCCCTGGCCCAGGACACACACAAGGCCACACTGGTATGGAAGCCCTGGCCAGAGCTGGAAAACCATGACTTCCAGCAAAGAGTGGAGAATCTCCTGAATTTGTGCTGTTCAAGTGCGTTGCCAGGTGGAGGGACCAATTCTGAATTTGCTTTGCACTCTCTCTTCGAGGCCAAAGGTGATGTGATGGCTGCTCTGGAAATGCTGCTGCTGCGGAAGCCAGTCAGGTTAAAATGTCACCCTTTAGCAAATTACCACTATGCCGGTTCGGACAAATGGACCTCCCTAGAAAGAAAACTGTTTAATAAAGCACTAGCCACTTACAACAAAGACTTTATTTTTGTACAGAAGATGGTGAAGTCCAAGACGGTGGCTCAGTGTGTGGAGTACTACTACACGTGGAAAAAAATCATGAGGTTGGGGAGGAAACACCGGACACGGCTCTCGGAAATCATCGACGATTGTGTGACGAGTGAAGAAGATGAAGAGGTACAGGAGGAGGAGGAGGACCCAGAAGAAGACAGGAAATCCACAAGAGAAGAGGAGAGTGAATTGCCCAAGTCTCCAGAGCCACCACCAGGCCCGGTCCTGGCTTCCGCAGAGGGACCGCCCCTGCAGGCCCTGGGCCAGCCCTCAGGCTCCTTCATCTGTGAAATGCCCAACTGTGGAGCTGTGTTCAGCTCCCGACAGGCACTGAATGGCCACGCCCGCATCCACGGTGGCACCAACCAGGTGACCAAAGCTCGGGGTGCTGTTCCCTCTGGAAAGCAGAAGCCTGGCAGTGCCCAGAGCGGGTACTGCTCAGTGAAGAGCTCACCCTCTCACAGCACCACCAGCGGCGAGACAGACCCCACCACCATCTTCCCCTGCAAGGAGTGTGGCAAAGTCTTCTTCAAGATCAAAAGCCGAAATGCACACATGAAAACTCACAGGCAGCAGGAGGAACAGCAGAGGCAGAAAGCCCAGAAGGCGGCTTTTGCAGCTGAAATGGCAGCCACGATTGAGAGGACTACGGGGCCGGTGGGGCCGCCGGGGCTGCTGCCCCTGGACCAGCTGAGTCTGATCAAACCCATCAAGGACGTGGACATCCTCGATGACGACGTCGTCCAGCAGTTAGGAGGCGTCATGGAAGAGGCCGAGGTCGTGGACACCGGTCTCCTATTGGATGATCAAGATTCAGTTTTGCTTCAGGGCGACACGGAACTCTAA

Related Sequences

bmy_00079T0 Protein

Length: 1208 aa      View alignments
>bmy_00079T0
MGDQQLYKTNHVAHGGENLFYQQPPLGVHGGLNHNYGNTVPGAGMDAPQASPISPHFPQDTRDGLGLPVGSKTLGQVDSSRQGGWAGHAGPGNHVQLRGNLTNSNMMWGSPAQAEPTDGYQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVNNMAQVLHTQSAVMDGAPESALRQLLSQKPMEPPAPALPSRYQQVPQQPHPGFTGGLSKPALQVGPHPSQGHPYYDYQQPLAQMPVQGGQSLQAPQMLSQHMQQLQQHQYYPQQQQQQAGQPRMSVQEMQPQQQQQIRPAQPQQLQQRQGSMQIPQYYQSSPMMQHLPESRQPQMHLQPPSYHRDPHQYTPEQAHAVQLIQLGSVPQYYYQEPQQPYGHPMYQQSHLAQHQQPEDGQPKTYPSDRQAQAMLSSHGDLGPPDTGMSDPTSSDLNRVSSALPHRPLLSPSGIHLNNMGPQHQQPSPSAVWPQMHLPDGRAQPGSPDSSGQPKGLFGEQFDAKNKLTCSICLKEFKSLPALNGHMRSHGGMRASPSLKQEEGEKAPAPPPQPPLPPPPPPPPQLPPEAESLTPMVMPVSVPVKLLPPKPSSQGFANSVAAAPSARDKPASSMSDDEMPVLVRMTLSPPHSPQGAAPHPPAEIPKKHQPGLAKAEEALKTAPEKKKFRHRPEPLFIPPPPSYTPNLAASYSGATLYQSQLRSPRVLGDHLLLDPSHELPPYTPPPMLSPVRQGSGLFSNVLISGHGAGAHPQLPLTPLTPTPRVLLCRPNSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDVSALAQDTHKATLVWKPWPELENHDFQQRVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMAALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYNKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRKHRTRLSEIIDDCVTSEEDEEVQEEEEDPEEDRKSTREEESELPKSPEPPPGPVLASAEGPPLQALGQPSGSFICEMPNCGAVFSSRQALNGHARIHGGTNQVTKARGAVPSGKQKPGSAQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSRNAHMKTHRQQEEQQRQKAQKAAFAAEMAATIERTTGPVGPPGLLPLDQLSLIKPIKDVDILDDDVVQQLGGVMEEAEVVDTGLLLDDQDSVLLQGDTEL*