Part of scaffold_1 (Scaffold)

For more information consult the page for scaffold_1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TMIGD1 ENSTTRG00000016343 (Bottlenosed dolphin)

Gene Details

transmembrane and immunoglobulin domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015490, Bottlenosed dolphin)

Protein Percentage 84.0%
cDNA percentage 89.78%
Ka/Ks Ratio 0.72844 (Ka = 0.1042, Ks = 0.1431)

BT.49016 ENSBTAG00000002609 (Cow)

Gene Details

transmembrane and immunoglobulin domain-containing protein 1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000003375, Cow)

Protein Percentage 76.79%
cDNA percentage 83.48%
Ka/Ks Ratio 0.5098 (Ka = 0.1593, Ks = 0.3125)

TMIGD1  (Minke Whale)

Gene Details

transmembrane and immunoglobulin domain containing 1

External Links

Gene match (Identifier: BACU010477, Minke Whale)

Protein Percentage 85.78%
cDNA percentage 90.22%
Ka/Ks Ratio 0.6563 (Ka = 0.0968, Ks = 0.1475)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 753 bp    Location:2008188..1995433   Strand:-
>bmy_00146
ATGGCATGGAAGACCAGCAGCCTAATGCAAATGTACAGATGTCTTCTCTTAGCGATTTTATTTCTGCCACATGAGATGACAAATTATAAAATGATTGGGGGCTTTGGGAAATTACAAAATCCAAACTGGAATGATTATACAGCTGGTATGGTTCAGAGTTCTGTTTTAACTGTGAATGGTAAAACTGAAAACTATATTCTGGACACTGAGCCTGGCCTCGAAGAATCTCTGAACTGTGCTGTTCAAAACCATACCAGAGAAGAAGAACTTCTCTGGTACCGCGAAGATGGGAGAGTGGATTTGAAATCTGGAAACAAAATCAACTCAAGCTCTGTCTGTGTCACTTCCATCAGTGAAAATGACAACGGTATCACCTTTACCTGCAAGCTGAGGAGGAATCAGTCGACGTCCATCTCAGTGGTGCTGAATGTCACTTTTCCTCCTCTCCTAAGTGGAAACGACTTCCAAACAGCTGAGGAAGGCAGTGATGTGAAGTTGGTTTGCAATGTGAAATCCAACCCCCAGGCTCAAATGATGTGGTACAAAAACAGTGGCGTCTTTAATTTAGAGAAAAACCATCACCAACTCCAACAGACAAGTGAGTATCTTCAACTGTCAATCAACAAAGTCAAGAAATCTGACAACGGAACCTACAGCTATGAAAAAGCCAAGATGACATCTAATACAGCAAGAGAGCTAAATGTGCCACAGCGAAAGAGAAAGAGAGAGAGCTGCTGTCAGACAGGTGGTTAA

Related Sequences

bmy_00146T0 Protein

Length: 251 aa      View alignments
>bmy_00146T0
MAWKTSSLMQMYRCLLLAILFLPHEMTNYKMIGGFGKLQNPNWNDYTAGMVQSSVLTVNGKTENYILDTEPGLEESLNCAVQNHTREEELLWYREDGRVDLKSGNKINSSSVCVTSISENDNGITFTCKLRRNQSTSISVVLNVTFPPLLSGNDFQTAEEGSDVKLVCNVKSNPQAQMMWYKNSGVFNLEKNHHQLQQTSEYLQLSINKVKKSDNGTYSYEKAKMTSNTARELNVPQRKRKRESCCQTGG*